Explorations of substituted urea functionality for the discovery of new activators of the heme-regulated inhibitor kinase.

Heme-regulated inhibitor kinase (HRI), a eukaryotic translation initiation factor 2 alpha (eIF2α) kinase, plays critical roles in cell proliferation, differentiation, and adaptation to cytoplasmic stress. HRI is also a critical modifier of hemoglobin disorders such as β-thalassemia. We previously identified N,N'-diarylureas as potent activators of HRI suitable for studying the biology of this important kinase. To expand the repertoire of chemotypes that activate HRI, we screened a ∼1900 member N,N'-disubstituted urea library in the surrogate eIF2α phosphorylation assay, identifying N-aryl,N'-cyclohexylphenoxyurea as a promising scaffold. We validated hit compounds as a bona fide HRI activators in secondary assays and explored the contributions of substitutions on the N-aryl and N'-cyclohexylphenoxy groups to their activity by studying focused libraries of complementing analogues. We tested these N-aryl,N'-cyclohexylphenoxyureas in the surrogate eIF2α phosphorylation and cell proliferation assays, demonstrating significantly improved bioactivities and specificities. We consider these compounds to represent lead candidates for the development of potent and specific HRI activators.

[1]  Ying Zhang,et al.  Synthesis and SAR study of novel 3,3-diphenyl-1,3-dihydroindol-2-one derivatives as potent eIF2·GTP·Met-tRNAiMet ternary complex inhibitors. , 2013, European journal of medicinal chemistry.

[2]  S. Singer,et al.  Small-molecule targeting of translation initiation for cancer therapy , 2013, Oncotarget.

[3]  Q. Jin,et al.  Dual Activators of Protein Kinase R (PKR) and Protein Kinase R‐Like Kinase (PERK) Identify Common and Divergent Catalytic Targets , 2013, Chembiochem : a European journal of chemical biology.

[4]  B. Hammock,et al.  Impact of soluble epoxide hydrolase and epoxyeicosanoids on human health. , 2013, Annual review of pharmacology and toxicology.

[5]  G. Wagner,et al.  Tumor suppression by small molecule inhibitors of translation initiation , 2012, Oncotarget.

[6]  E. J. North,et al.  Screening a library of 1600 adamantyl ureas for anti-Mycobacterium tuberculosis activity in vitro and for better physical chemical properties for bioavailability. , 2012, Bioorganic & medicinal chemistry.

[7]  B. Hammock,et al.  Discovery of inhibitors of soluble epoxide hydrolase: a target with multiple potential therapeutic indications. , 2012, Journal of medicinal chemistry.

[8]  J. Supko,et al.  Chemical Genetics Identify eIF2α Kinase Heme Regulated Inhibitor as Anti-Cancer Target , 2011, Nature chemical biology.

[9]  B. Aktas,et al.  Embryonic Lethal Abnormal Vision-like HuR-dependent mRNA Stability Regulates Post-transcriptional Expression of Cyclin-dependent Kinase Inhibitor p27Kip1 , 2010, The Journal of Biological Chemistry.

[10]  Jennifer F. Raven,et al.  PERK and PKR: Old kinases learn new tricks , 2008, Cell cycle.

[11]  A. Berns A tRNA with Oncogenic Capacity , 2008, Cell.

[12]  Lynne Marshall,et al.  RETRACTED: Elevated tRNAi Met Synthesis Can Drive Cell Proliferation and Oncogenic Transformation , 2008, Cell.

[13]  Jennifer F. Raven,et al.  PKR and PKR-like Endoplasmic Reticulum Kinase Induce the Proteasome-dependent Degradation of Cyclin D1 via a Mechanism Requiring Eukaryotic Initiation Factor 2α Phosphorylation* , 2008, Journal of Biological Chemistry.

[14]  David O'Hagan,et al.  Understanding organofluorine chemistry. An introduction to the C-F bond. , 2008, Chemical Society reviews.

[15]  S. Hwang,et al.  Orally bioavailable potent soluble epoxide hydrolase inhibitors. , 2007, Journal of medicinal chemistry.

[16]  Jane-Jane Chen Regulation of protein synthesis by the heme-regulated eIF2alpha kinase: relevance to anemias. , 2007, Blood.

[17]  S. Swisher,et al.  Genetic deletion of PKR abrogates TNF-induced activation of IκBα kinase, JNK, Akt and cell proliferation but potentiates p44/p42 MAPK and p38 MAPK activation , 2007, Oncogene.

[18]  S. Hwang,et al.  Solid-phase combinatorial approach for the optimization of soluble epoxide hydrolase inhibitors. , 2006, Bioorganic & medicinal chemistry letters.

[19]  Arvin C. Dar,et al.  Mechanistic Link between PKR Dimerization, Autophosphorylation, and eIF2α Substrate Recognition , 2005, Cell.

[20]  M. Fleming,et al.  Heme-regulated eIF2α kinase modifies the phenotypic severity of murine models of erythropoietic protoporphyria and β-thalassemia , 2005 .

[21]  N. Sonenberg,et al.  Resistance to Vesicular Stomatitis Virus Infection Requires a Functional Cross Talk between the Eukaryotic Translation Initiation Factor 2α Kinases PERK and PKR , 2004, Journal of Virology.

[22]  N. Sonenberg,et al.  When translation meets metabolism: multiple links to diabetes. , 2003, Endocrine reviews.

[23]  M. Lang-Muritano,et al.  Loss of kinase activity in a patient with Wolcott-Rallison syndrome caused by a novel mutation in the EIF2AK3 gene. , 2002, Diabetes.

[24]  A. Hinnebusch,et al.  Tight Binding of the Phosphorylated α Subunit of Initiation Factor 2 (eIF2α) to the Regulatory Subunits of Guanine Nucleotide Exchange Factor eIF2B Is Required for Inhibition of Translation Initiation , 2001, Molecular and Cellular Biology.

[25]  H. Aktas,et al.  Inhibition of translation initiation mediates the anticancer effect of the n-3 polyunsaturated fatty acid eicosapentaenoic acid. , 2000, Cancer research.

[26]  D. Ron,et al.  Perk is essential for translational regulation and cell survival during the unfolded protein response. , 2000, Molecular cell.

[27]  J. Halperin,et al.  Depletion of intracellular Ca2+ stores, phosphorylation of eIF2alpha, and sustained inhibition of translation initiation mediate the anticancer effects of clotrimazole. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[28]  A. Hinnebusch,et al.  Regulation of Guanine Nucleotide Exchange through Phosphorylation of Eukaryotic Initiation Factor eIF2α , 1998, The Journal of Biological Chemistry.

[29]  G. Cooper,et al.  Ras links growth factor signaling to the cell cycle machinery via regulation of cyclin D1 and the Cdk inhibitor p27KIP1 , 1997, Molecular and cellular biology.

[30]  A. Hinnebusch,et al.  Modulation of tRNA(iMet), eIF-2, and eIF-2B expression shows that GCN4 translation is inversely coupled to the level of eIF-2.GTP.Met-tRNA(iMet) ternary complexes , 1995, Molecular and cellular biology.

[31]  N. Sonenberg,et al.  Abrogation of translation initiation factor eIF‐2 phosphorylation causes malignant transformation of NIH 3T3 cells. , 1995, The EMBO journal.

[32]  W. A. Sheppard The Effect of Fluorine Substitution on the Electronic Properties of Alkoxy, Alkylthio and Alkylsulfonyl Groups , 1963 .

[33]  S. Denoyelle,et al.  In vitro inhibition of translation initiation by N,N'-diarylureas--potential anti-cancer agents. , 2012, Bioorganic & medicinal chemistry letters.

[34]  M. Paccalin,et al.  Inhibition of double-stranded RNA-dependent protein kinase strongly decreases cytokine production and release in peripheral blood mononuclear cells from patients with Alzheimer's disease. , 2010, Journal of Alzheimer's disease : JAD.

[35]  W. Seeger,et al.  PKR regulates TLR2/TLR4-dependent signaling in murine alveolar macrophages. , 2008, American journal of respiratory cell and molecular biology.

[36]  Jennifer F. Raven,et al.  PKR and PERK Induce the Proteasome-dependent Degradation of Cyclin D1 via a Mechanism Requiring eIF2 α phosphorylation. , 2007 .

[37]  S. Swisher,et al.  Genetic deletion of PKR abrogates TNF-induced activation of IkappaBalpha kinase, JNK, Akt and cell proliferation but potentiates p44/p42 MAPK and p38 MAPK activation. , 2007, Oncogene.

[38]  M. Fleming,et al.  Heme-regulated eIF2alpha kinase modifies the phenotypic severity of murine models of erythropoietic protoporphyria and beta-thalassemia. , 2005, The Journal of clinical investigation.

[39]  Jane-Jane Chen 14 Heme-regulated eIF2α Kinase , 2000 .

[40]  N. Sonenberg,et al.  Translational control of gene expression , 2000 .

[41]  A. Haas The Element Displacement Principle: A New Guide in P-Block Element Chemistry , 1984 .