Synchrotron-based macromolecular crystallography module for an undergraduate biochemistry laboratory course.

This paper describes the introduction of synchrotron-based macromolecular crystallography (MX) into an undergraduate laboratory class. An introductory 2 week experimental module on MX, consisting of four laboratory sessions and two classroom lectures, was incorporated into a senior-level biochemistry class focused on a survey of biochemical techniques, including the experimental characterization of proteins. Students purified recombinant protein samples, set up crystallization plates and flash-cooled crystals for shipping to a synchrotron. Students then collected X-ray diffraction data sets from their crystals via the remote interface of the Molecular Biology Consortium beamline (4.2.2) at the Advanced Light Source in Berkeley, CA, USA. Processed diffraction data sets were transferred back to the laboratory and used in conjunction with partial protein models provided to the students for refinement and model building. The laboratory component was supplemented by up to 2 h of lectures by faculty with expertise in MX. This module can be easily adapted for implementation into other similar undergraduate classes, assuming the availability of local crystallographic expertise and access to remote data collection at a synchrotron source.

[1]  Saulius Gražulis,et al.  Crystallographic education in the 21st century , 2015, Journal of applied crystallography.

[2]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[3]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[4]  Virginia B. Pett,et al.  Teaching crystallography to undergraduate physical chemistry students , 2010 .

[5]  Clyde A. Smith,et al.  Remote access to crystallography beamlines at SSRL: novel tools for training, education and collaboration , 2010, Journal of applied crystallography.

[6]  M. Jaskólski Integrating biocrystallography into traditional biology and chemistry curricula , 2000 .

[7]  Chenghua Shao,et al.  Trendspotting in the Protein Data Bank , 2013, FEBS letters.

[8]  A Beteva,et al.  High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline. , 2006, Acta crystallographica. Section D, Biological crystallography.

[9]  K. Hasegawa,et al.  Development of a shutterless continuous rotation method using an X-ray CMOS detector for protein crystallography , 2009, Journal of applied crystallography.

[10]  J. Tanner,et al.  Crystal Structures of the histidine acid phosphatase from Francisella tularensis provide insight into substrate recognition. , 2009, Journal of molecular biology.

[11]  E. Mitchell,et al.  Synchrotron radiation macromolecular crystallography: science and spin-offs , 2015, IUCrJ.

[12]  C. Sanders,et al.  Personalized Biochemistry and Biophysics , 2015, Biochemistry.

[13]  Update on the tutorial for learning and teaching macromolecular crystallography , 2010 .

[14]  Philip R. Evans,et al.  How good are my data and what is the resolution? , 2013, Acta crystallographica. Section D, Biological crystallography.

[15]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[16]  Shao-Liang Zheng,et al.  Teaching with the Case Study Method To Promote Active Learning in a Small Molecule Crystallography Course for Chemistry Students , 2016 .

[17]  J. Tanner,et al.  Crystallization of a newly discovered histidine acid phosphatase from Francisella tularensis. , 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

[18]  Pawel Grochulski,et al.  Canadian macromolecular crystallography facility: a suite of fully automated beamlines , 2012, Journal of Structural and Functional Genomics.

[19]  Victor S Lamzin,et al.  Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. , 2005, Acta crystallographica. Section D, Biological crystallography.

[20]  J. Tanner,et al.  Characterization of recombinant Francisella tularensis acid phosphatase A. , 2006, Protein expression and purification.

[21]  Peter Kuhn,et al.  Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines. , 2002, Journal of synchrotron radiation.

[22]  G. Diakun,et al.  Science experiments via telepresence at a synchrotron radiation source facility , 2008, Journal of synchrotron radiation.

[23]  Andrea Schmidt,et al.  A tutorial for learning and teaching macromolecular crystallography , 2008 .

[24]  Morgan E. Howe,et al.  Analysis of Small Molecule X-Ray Crystal Structures: Chemical Crystallography with Undergraduate Students in a Teaching Laboratory , 2014, Journal of Chemical Crystallography.