An Expandable Hydrogen-Bonded Organic Framework Characterized by Three-Dimensional Electron Diffraction

A molecular crystal of a 2-D hydrogen-bonded organic framework (HOF) undergoes an unusual structural transformation after solvent removal from the crystal pores during activation. The conformationally flexible host molecule, ABTPA, adapts its molecular conformation during activation to initiate a framework expansion. The microcrystalline activated phase was characterized by three-dimensional electron diffraction (3D ED), which revealed that ABTPA uses out-of-plane anthracene units as adaptive structural anchors. These units change orientation to generate an expanded, lower density framework material in the activated structure. The porous HOF, ABTPA-2, has robust dynamic porosity (SABET = 1183 m2 g–1) and exhibits negative area thermal expansion. We use crystal structure prediction (CSP) to understand the underlying energetics behind the structural transformation and discuss the challenges facing CSP for such flexible molecules.

[1]  A. Cooper,et al.  The Chemistry of Porous Organic Molecular Materials , 2020, Advanced Functional Materials.

[2]  Christopher M. Kane,et al.  Photocatalytic proton reduction by a computationally identified, molecular hydrogen-bonded framework , 2019, Journal of Materials Chemistry A.

[3]  M. Hirscher,et al.  Barely porous organic cages for hydrogen isotope separation , 2019, Science.

[4]  Christian J. Doonan,et al.  Enzyme Encapsulation in a Porous Hydrogen-Bonded Organic Framework. , 2019, Journal of the American Chemical Society.

[5]  U. Kolb,et al.  Automated electron diffraction tomography – development and applications , 2019, Acta crystallographica Section B, Structural science, crystal engineering and materials.

[6]  M. Högbom,et al.  Solving a new R2lox protein structure by microcrystal electron diffraction , 2019, Science Advances.

[7]  J. F. Stoddart,et al.  Assembly of a Porous Supramolecular Polyknot from Rigid Trigonal Prismatic Building Blocks. , 2019, Journal of the American Chemical Society.

[8]  J. Abrahams,et al.  3D Electron Diffraction: The Nanocrystallography Revolution , 2019, ACS central science.

[9]  A. Tkatchenko,et al.  Computational polymorph screening reveals late-appearing and poorly-soluble form of rotigotine , 2019, Communications Chemistry.

[10]  Wei Zhou,et al.  Postsynthetic Metalation of a Robust Hydrogen-Bonded Organic Framework for Heterogeneous Catalysis. , 2019, Journal of the American Chemical Society.

[11]  Xiaolong Zou,et al.  Soft Porous Crystal Based upon Organic Cages That Exhibit Guest-Induced Breathing and Selective Gas Separation. , 2019, Journal of the American Chemical Society.

[12]  R. Clowes,et al.  Synthesis of a Large, Shape-Flexible, Solvatomorphic Porous Organic Cage , 2019, Crystal growth & design.

[13]  Gautam R Desiraju,et al.  Crystal Engineering: An Outlook for the Future. , 2019, Angewandte Chemie.

[14]  François-Xavier Coudert,et al.  Towards general network architecture design criteria for negative gas adsorption transitions in ultraporous frameworks , 2019, Nature Communications.

[15]  Wei Zhou,et al.  Multifunctional porous hydrogen-bonded organic framework materials. , 2019, Chemical Society reviews.

[16]  J. F. Stoddart,et al.  Interpenetration Isomerism in Triptycene-Based Hydrogen-Bonded Organic Frameworks. , 2019, Angewandte Chemie.

[17]  Takayoshi Nakamura,et al.  Acid Responsive Hydrogen-Bonded Organic Frameworks. , 2019, Journal of the American Chemical Society.

[18]  Bin Wang,et al.  High-throughput continuous rotation electron diffraction data acquisition via software automation , 2018, Journal of applied crystallography.

[19]  Tim Gruene,et al.  Rapid Structure Determination of Microcrystalline Molecular Compounds Using Electron Diffraction , 2018, Angewandte Chemie.

[20]  M. Zaworotko,et al.  Coordination Network That Reversibly Switches between Two Nonporous Polymorphs and a High Surface Area Porous Phase. , 2018, Journal of the American Chemical Society.

[21]  Bin Wang,et al.  A Porous Cobalt Tetraphosphonate Metal-Organic Framework: Accurate Structure and Guest Molecule Location Determined by Continuous-Rotation Electron Diffraction. , 2018, Chemistry.

[22]  Tamir Gonen,et al.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination , 2018, ACS central science.

[23]  Mercedes K. Taylor,et al.  Near-Perfect CO2/CH4 Selectivity Achieved through Reversible Guest Templating in the Flexible Metal-Organic Framework Co(bdp). , 2018, Journal of the American Chemical Society.

[24]  Guangquan Chen,et al.  An Ultra-Robust and Crystalline Redeemable Hydrogen-Bonded Organic Framework for Synergistic Chemo-Photodynamic Therapy. , 2018, Angewandte Chemie.

[25]  Ahmed S. Etman,et al.  Observation of Interpenetration Isomerism in Covalent Organic Frameworks. , 2018, Journal of the American Chemical Society.

[26]  Feihe Huang,et al.  Near-Ideal Xylene Selectivity in Adaptive Molecular Pillar[n]arene Crystals , 2018, Journal of the American Chemical Society.

[27]  A. Cooper,et al.  Computational modelling of solvent effects in a prolific solvatomorphic porous organic cage† †Electronic supplementary information (ESI) available. CCDC 1575910–1575914. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c8fd00031j , 2018, Faraday discussions.

[28]  Andreas Hansen,et al.  A look at the density functional theory zoo with the advanced GMTKN55 database for general main group thermochemistry, kinetics and noncovalent interactions. , 2017, Physical chemistry chemical physics : PCCP.

[29]  M. Hirscher,et al.  Selective Hydrogen Isotope Separation via Breathing Transition in MIL-53(Al). , 2017, Journal of the American Chemical Society.

[30]  Wei Zhou,et al.  Two solvent-induced porous hydrogen-bonded organic frameworks: solvent effects on structures and functionalities. , 2017, Chemical communications.

[31]  Lars Öhrström,et al.  Elucidation of the elusive structure and formula of the active pharmaceutical ingredient bismuth subgallate by continuous rotation electron diffraction. , 2017, Chemical communications.

[32]  B. Alston,et al.  Computationally-Guided Synthetic Control over Pore Size in Isostructural Porous Organic Cages , 2017, ACS central science.

[33]  Falu Hu,et al.  An Ultrastable and Easily Regenerated Hydrogen-Bonded Organic Molecular Framework with Permanent Porosity. , 2017, Angewandte Chemie.

[34]  Feihe Huang,et al.  Styrene Purification by Guest-Induced Restructuring of Pillar[6]arene , 2017, Journal of the American Chemical Society.

[35]  Christopher M. Kane,et al.  Functional materials discovery using energy–structure–function maps , 2017, Nature.

[36]  Aamod V. Desai,et al.  Hydrogen-Bonded Organic Frameworks (HOFs): A New Class of Porous Crystalline Proton-Conducting Materials. , 2016, Angewandte Chemie.

[37]  A. Cooper,et al.  Porous organic cages: soluble, modular and molecular pores , 2016 .

[38]  Y. Imamura,et al.  A Series of Layered Assemblies of Hydrogen-Bonded, Hexagonal Networks of C3-Symmetric π-Conjugated Molecules: A Potential Motif of Porous Organic Materials. , 2016, Journal of the American Chemical Society.

[39]  François-Xavier Coudert,et al.  A pressure-amplifying framework material with negative gas adsorption transitions , 2016, Nature.

[40]  O. Terasaki,et al.  Weaving of organic threads into a crystalline covalent organic framework , 2016, Science.

[41]  Craig M. Brown,et al.  Methane storage in flexible metal–organic frameworks with intrinsic thermal management , 2015, Nature.

[42]  A. Emwas,et al.  MOF Crystal Chemistry Paving the Way to Gas Storage Needs: Aluminum-Based soc-MOF for CH4, O2, and CO2 Storage , 2015, Journal of the American Chemical Society.

[43]  François-Xavier Coudert,et al.  Responsive Metal–Organic Frameworks and Framework Materials: Under Pressure, Taking the Heat, in the Spotlight, with Friends , 2015 .

[44]  C. Adjiman,et al.  Prediction of the crystal structures of axitinib, a polymorphic pharmaceutical molecule , 2015 .

[45]  G. Sheldrick SHELXT – Integrated space-group and crystal-structure determination , 2015, Acta crystallographica. Section A, Foundations and advances.

[46]  G. Sheldrick Crystal structure refinement with SHELXL , 2015, Acta crystallographica. Section C, Structural chemistry.

[47]  M. O'keeffe,et al.  A rod-packing microporous hydrogen-bonded organic framework for highly selective separation of C2H2/CO2 at room temperature. , 2014, Angewandte Chemie.

[48]  Watchareeya Kaveevivitchai,et al.  Thermally robust and porous noncovalent organic framework with high affinity for fluorocarbons and CFCs , 2014, Nature Communications.

[49]  A. Cooper,et al.  Separation of rare gases and chiral molecules by selective binding in porous organic cages. , 2014, Nature materials.

[50]  A. J. Blake,et al.  A Robust Binary Supramolecular Organic Framework (SOF) with High CO2 Adsorption and Selectivity , 2014, Journal of the American Chemical Society.

[51]  Tamir Gonen,et al.  High-resolution structure determination by continuous rotation data collection in MicroED , 2014, Nature Methods.

[52]  S. Kaskel,et al.  Flexible metal-organic frameworks. , 2014, Chemical Society reviews.

[53]  Iris M. Oppel,et al.  A shape-persistent quadruply interlocked giant cage catenane with two distinct pores in the solid state. , 2014, Angewandte Chemie.

[54]  Edward O. Pyzer-Knapp,et al.  Predicted crystal energy landscapes of porous organic cages , 2014 .

[55]  Iris M. Oppel,et al.  A permanent mesoporous organic cage with an exceptionally high surface area. , 2014, Angewandte Chemie.

[56]  Edward O. Pyzer-Knapp,et al.  Controlling the crystallization of porous organic cages: molecular analogs of isoreticular frameworks using shape-specific directing solvents. , 2014, Journal of the American Chemical Society.

[57]  Sven Hovmöller,et al.  Three-dimensional rotation electron diffraction: software RED for automated data collection and data processing , 2013, Journal of applied crystallography.

[58]  Jie Su,et al.  Single-crystal structure of a covalent organic framework. , 2013, Journal of the American Chemical Society.

[59]  Tamoghna Mitra,et al.  Molecular shape sorting using molecular organic cages. , 2013, Nature chemistry.

[60]  Christian J. Doonan,et al.  Kinetically controlled porosity in a robust organic cage material. , 2013, Angewandte Chemie.

[61]  M. Gemmi,et al.  Scanning reciprocal space for solving unknown structures: energy filtered diffraction tomography and rotation diffraction tomography methods , 2012 .

[62]  P. Sozzani,et al.  Porous dipeptide crystals as polymerization nanoreactors. , 2012, Angewandte Chemie.

[63]  Iris M. Oppel,et al.  Rational construction of an extrinsic porous molecular crystal with an extraordinary high specific surface area. , 2012, Angewandte Chemie.

[64]  S. Xiang,et al.  A microporous hydrogen-bonded organic framework for highly selective C2H2/C2H4 separation at ambient temperature. , 2011, Journal of the American Chemical Society.

[65]  A. Cooper,et al.  Modular and predictable assembly of porous organic molecular crystals , 2011, Nature.

[66]  S. Hovmöller,et al.  Collecting 3D electron diffraction data by the rotation method , 2010 .

[67]  U. Kolb,et al.  "Ab initio" structure solution from electron diffraction data obtained by a combination of automated diffraction tomography and precession technique. , 2009, Ultramicroscopy.

[68]  Richard J. Gildea,et al.  OLEX2: a complete structure solution, refinement and analysis program , 2009 .

[69]  J. Atwood,et al.  Gas-induced transformation and expansion of a non-porous organic solid. , 2008, Nature materials.

[70]  Toshihiro Tanaka,et al.  Acridinylresorcinol as a self-complementary building block of robust hydrogen-bonded 2D nets with coordinative saturation. Preservation of crystal structures upon guest alteration, guest removal, and host modification. , 2002, Journal of the American Chemical Society.

[71]  H. Masuda,et al.  Catalysis by Organic Solids. Stereoselective Diels−Alder Reactions Promoted by Microporous Molecular Crystals Having an Extensive Hydrogen-Bonded Network , 1997 .

[72]  J. Wuest,et al.  Molecular Tectonics. Porous Hydrogen-Bonded Networks with Unprecedented Structural Integrity , 1997 .

[73]  R. Clowes,et al.  Reticular synthesis of porous molecular 1D nanotubes and 3D networks. , 2017, Nature chemistry.