Nudged elastic band calculations accelerated with Gaussian process regression.
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Aki Vehtari | Hannes Jónsson | Aki Vehtari | H. Jónsson | O. Koistinen | Olli-Pekka Koistinen | Vilhjálmur Ásgeirsson | V. Ásgeirsson | Freyja B Dagbjartsdóttir | F. B. Dagbjartsdottir
[1] Aki Vehtari,et al. GPstuff: Bayesian modeling with Gaussian processes , 2013, J. Mach. Learn. Res..
[2] Aki Vehtari,et al. Gaussian processes with monotonicity information , 2010, AISTATS.
[3] David J Wales,et al. Benchmarks for Characterization of Minima, Transition States, and Pathways in Atomic, Molecular, and Condensed Matter Systems. , 2014, Journal of chemical theory and computation.
[4] Hannes Jónsson,et al. Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation , 2015, Comput. Phys. Commun..
[5] H. Jónsson,et al. Nudged elastic band method for finding minimum energy paths of transitions , 1998 .
[6] K. Müller,et al. Location of saddle points and minimum energy paths by a constrained simplex optimization procedure , 1979 .
[7] Andrew A Peterson,et al. Acceleration of saddle-point searches with machine learning. , 2016, The Journal of chemical physics.
[8] Kristian Kersting,et al. Scaled Conjugate Gradients for Maximum Likelihood: An Empirical Comparison with the EM Algorithm , 2002, Probabilistic Graphical Models.
[9] Kurt Stokbro,et al. Improved initial guess for minimum energy path calculations. , 2014, The Journal of chemical physics.
[10] Nando de Freitas,et al. Taking the Human Out of the Loop: A Review of Bayesian Optimization , 2016, Proceedings of the IEEE.
[11] James C. Keck,et al. Variational Theory of Reaction Rates , 2007 .
[12] Jouko Lampinen,et al. Bayesian approach for neural networks--review and case studies , 2001, Neural Networks.
[13] H. Jónsson,et al. Optimization of hyperplanar transition states , 2001 .
[14] A. P. Dawid,et al. Regression and Classification Using Gaussian Process Priors , 2009 .
[15] Carl E. Rasmussen,et al. Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.
[16] Hannes Jónsson,et al. Simulation of surface processes , 2011, Proceedings of the National Academy of Sciences.
[17] H. Jónsson,et al. Potential Energy Surfaces and Rates of Spin Transitions , 2013 .
[18] Emile Maras,et al. Global transition path search for dislocation formation in Ge on Si(001) , 2016, Comput. Phys. Commun..
[19] H. Jónsson,et al. Harmonic transition-state theory of thermal spin transitions , 2012 .
[20] H. J. Mclaughlin,et al. Learn , 2002 .
[21] A. P. Dawid,et al. Gaussian Processes to Speed up Hybrid Monte Carlo for Expensive Bayesian Integrals , 2003 .
[22] H. Jónsson,et al. Reversible work based quantum transition state theory , 1994 .
[23] G. Henkelman,et al. A climbing image nudged elastic band method for finding saddle points and minimum energy paths , 2000 .
[24] Thomas Bligaard,et al. Optimization of hyperplanar transition states: Application to 2D test problems , 2005, Comput. Phys. Commun..
[25] G. Henkelman,et al. Optimization methods for finding minimum energy paths. , 2008, The Journal of chemical physics.
[26] Margaret Nichols. Trans , 2015, De-centering queer theory.
[27] RAW quantum transition state theory , 1998 .
[28] Hannes Jonsson,et al. Reversible work transition state theory: application to dissociative adsorption of hydrogen , 1995 .
[29] Gábor Csányi,et al. Gaussian approximation potentials: A brief tutorial introduction , 2015, 1502.01366.
[30] Aki Vehtari,et al. Minimum energy path calculations with Gaussian process regression , 2016, 1703.10423.
[31] Carl E. Rasmussen,et al. Derivative Observations in Gaussian Process Models of Dynamic Systems , 2002, NIPS.
[32] H. J'onsson,et al. Calculations of magnetic states and minimum energy paths of transitions using a noncollinear extension of the Alexander-Anderson model and a magnetic force theorem , 2014, 1404.0415.
[33] Gregory K. Schenter,et al. Generalized path integral based quantum transition state theory , 1997 .
[34] G. Henkelman,et al. Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points , 2000 .
[35] Eugene P. Wigner,et al. The transition state method , 1938 .
[36] Aki Vehtari,et al. Speeding up the binary Gaussian process classification , 2010, UAI.
[37] H. Jónsson,et al. Diffusion and Island formation on the ice Ih basal plane surface , 2001 .
[38] G. Vineyard. Frequency factors and isotope effects in solid state rate processes , 1957 .
[39] G. Henkelman,et al. Methods for Finding Saddle Points and Minimum Energy Paths , 2002 .
[40] H. Kramers. Brownian motion in a field of force and the diffusion model of chemical reactions , 1940 .
[41] D. Mackay,et al. Introduction to Gaussian processes , 1998 .