Methanogenic burst in the end-Permian carbon cycle

Significance The end-Permian extinction is the most severe biotic crisis in the fossil record. Its occurrence has been attributed to increased CO2 levels deriving from massive Siberian volcanism. However, such arguments have been difficult to justify quantitatively. We propose that the disruption of the carbon cycle resulted from the emergence of a new microbial metabolic pathway that enabled efficient conversion of marine organic carbon to methane. The methanogenic expansion was catalyzed by nickel associated with the volcanic event. We support this hypothesis with an analysis of carbon isotopic changes leading up to the extinction, phylogenetic analysis of methanogenic archaea, and measurements of nickel concentrations in South China sediments. Our results highlight the sensitivity of the Earth system to microbial evolution. The end-Permian extinction is associated with a mysterious disruption to Earth’s carbon cycle. Here we identify causal mechanisms via three observations. First, we show that geochemical signals indicate superexponential growth of the marine inorganic carbon reservoir, coincident with the extinction and consistent with the expansion of a new microbial metabolic pathway. Second, we show that the efficient acetoclastic pathway in Methanosarcina emerged at a time statistically indistinguishable from the extinction. Finally, we show that nickel concentrations in South China sediments increased sharply at the extinction, probably as a consequence of massive Siberian volcanism, enabling a methanogenic expansion by removal of nickel limitation. Collectively, these results are consistent with the instigation of Earth’s greatest mass extinction by a specific microbial innovation.