Finding Our Way through Phenotypes
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Laura M. Jackson | Paula M. Mabee | Carolyn J. Lawrence | Katja C. Seltmann | J. G. Burleigh | Peter N. Robinson | M. Ashburner | J. Blake | S. Lewis | H. Parkinson | P. Midford | S. Köhler | C. Mungall | A. Ruttenberg | J. Lundberg | H. Lapp | M. Vihinen | T. Hayamizu | Mélanie Courtot | P. Robinson | Katja-Sabine Schulz | N. L. Le Novère | M. Haendel | M. Dumontier | A. Oellrich | P. Jaiswal | E. Huala | L. Cooper | R. Walls | D. Osumi-Sutherland | L. Harmon | J. Balhoff | Y. He | W. Dahdul | D. Blackburn | Erik Segerdell | Christina James-Zorn | P. D. Vize | A. Zorn | R. B. Squires | H. Hines | S. Richter | Lars Vogt | N. Franz | G. Lecointre | C. Wall | J. Woolley | J. Fernandez-Triana | M. Sharkey | J. Macklin | R. Druzinsky | A. Deans | Salvatore S. Anzaldo | B. Chanet | Sándor Csösz | Hong Cui | Sandip Das | T. Dececchi | A. Dettai | R. Diogo | F. Friedrich | G. Gkoutos | Nizar Ibrahim | A. Mast | I. Mikó | Martín J. Ramírez | A. Smith | Barry Smith | C. Specht | R. Thacker | A. Thessen | M. Westerfeld | R. Wharton | C. S. Wirkner | M. Yoder | Austin R Mast | J. Fernández-Triana | C. Lawrence | E. Segerdell | J. FERNÁNDEZ-TRIANA | P. Vize | Sebastian Köhler | S. Lewis | David Osumi-Sutherland | J. Burleigh
[1] D. Meinke,et al. A Comprehensive Dataset of Genes with a Loss-of-Function Mutant Phenotype in Arabidopsis , 2012, Plant Physiology.
[2] Ruei-Jiun Hung,et al. Mical links semaphorins to F-actin disassembly , 2010, Nature.
[3] Huaqin Pan,et al. The PhenX Toolkit: Get the Most From Your Measures , 2011, American journal of epidemiology.
[4] S. Inagaki,et al. A functional role for semaphorin 4D/plexin B1 interactions in epithelial branching morphogenesis during organogenesis , 2008, Development.
[5] Masato Kimura,et al. NCBI’s Database of Genotypes and Phenotypes: dbGaP , 2013, Nucleic Acids Res..
[6] S. Mundlos,et al. The Human Phenotype Ontology , 2010, Clinical genetics.
[7] Damian Smedley,et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data , 2014, Nucleic Acids Res..
[8] Gregory T. Baxter,et al. The Digital Fish Library: Using MRI to Digitize, Database, and Document the Morphological Diversity of Fish , 2012, PloS one.
[9] Hilmar Lapp,et al. Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature , 2010, PloS one.
[10] Heather A. Piwowar,et al. Data archiving is a good investment , 2011, Nature.
[11] S. D. Fraser,et al. Semaphorin-plexin signaling guides patterning of the developing vasculature. , 2004, Developmental cell.
[12] Jeffrey Ross-Ibarra,et al. Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels1[W] , 2011, Plant Physiology.
[13] James P. Balhoff,et al. A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia , 2013, Systematic biology.
[14] John M. Hancock,et al. Entity/quality-based logical definitions for the human skeletal phenome using PATO , 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
[15] S. Austad,et al. The long lifespan of two bat species is correlated with resistance to protein oxidation and enhanced protein homeostasis , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[16] Jessica A. Turner,et al. Modeling biomedical experimental processes with OBI , 2010, J. Biomed. Semant..
[17] 田中 俊典. National Center for Biotechnology Information (NCBI) , 2012 .
[18] Barry Smith,et al. The environment ontology: contextualising biological and biomedical entities , 2013, Journal of Biomedical Semantics.
[19] Kriston L. McGary,et al. Systematic discovery of nonobvious human disease models through orthologous phenotypes , 2010, Proceedings of the National Academy of Sciences.
[20] José L. V. Mejino,et al. CARO - The Common Anatomy Reference Ontology , 2008, Anatomy Ontologies for Bioinformatics.
[21] J. Epstein,et al. Semaphorin-PlexinD1 signaling limits angiogenic potential via the VEGF decoy receptor sFlt1. , 2011, Developmental cell.
[22] C. Justice,et al. High-Resolution Global Maps of 21st-Century Forest Cover Change , 2013, Science.
[23] Seth Kaufman,et al. MorphoBank: phylophenomics in the “cloud” , 2011, Cladistics : the international journal of the Willi Hennig Society.
[24] James C. Schnable,et al. Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize , 2011, PloS one.
[25] Edward S. Buckler,et al. Gramene database in 2010: updates and extensions , 2010, Nucleic Acids Res..
[26] Qifa Zhang,et al. Genome-wide association studies of 14 agronomic traits in rice landraces , 2010, Nature Genetics.
[27] S. Lewis,et al. Uberon, an integrative multi-species anatomy ontology , 2012, Genome Biology.
[28] Dani Zamir,et al. Where Have All the Crop Phenotypes Gone? , 2013, PLoS biology.
[29] James P. Balhoff,et al. Folding Wings like a Cockroach: A Review of Transverse Wing Folding Ensign Wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania) , 2014, PloS one.
[30] John J. O'Connor,et al. Selective Inhibition of Retinal Angiogenesis by Targeting PI3 Kinase , 2009, PloS one.
[31] Ramon F. Vinces. Phenomics : Genotype to Phenotype A report of the Phenomics workshop sponsored by the USDA and NSF 2011 , 2011 .
[32] Cathie Martin,et al. Trichomes: different regulatory networks lead to convergent structures. , 2006, Trends in plant science.
[33] Kevin Y. Ma,et al. Controlled Flight of a Biologically Inspired, Insect-Scale Robot , 2013, Science.
[34] Elena P Ivanova,et al. Biophysical model of bacterial cell interactions with nanopatterned cicada wing surfaces. , 2013, Biophysical journal.
[35] Liya Ren,et al. Gramene QTL database: development, content and applications , 2009, Database J. Biol. Databases Curation.
[36] Paula M. Mabee,et al. 500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton , 2012, Zeitschrift fur angewandte Ichthyologie = Journal of applied ichthyology.
[37] Brett E. Pickett,et al. Standardized Metadata for Human Pathogen/Vector Genomic Sequences , 2014, PloS one.
[38] Stefan Richter,et al. Evolutionary morphology of the circulatory system in Peracarida (Malacostraca; Crustacea) , 2010 .
[39] D. Hanahan,et al. Hallmarks of Cancer: The Next Generation , 2011, Cell.
[40] Barbara A. Block,et al. Advances in conservation oceanography: new tagging and tracking technologies and their potential for transforming the science underlying fisheries management , 2009 .
[41] Nico M. Franz,et al. BIOLOGICAL TAXONOMY AND ONTOLOGY DEVELOPMENT: SCOPE AND LIMITATIONS , 2010 .
[42] M. Ashburner,et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration , 2007, Nature Biotechnology.
[43] S. Omholt,et al. Phenomics: the next challenge , 2010, Nature Reviews Genetics.
[44] E. Giraudo,et al. The role of semaphorins and their receptors in vascular development and cancer. , 2013, Experimental cell research.
[45] D. Balme,et al. Aristotle: 'Historia Animalium': Volume 1, Books I-X: Text , 2002 .
[46] B. Hall,et al. On the Nature of Limbs: A Discourse , 2008 .
[47] Hong Cui. CharaParser for fine-grained semantic annotation of organism morphological descriptions , 2012, J. Assoc. Inf. Sci. Technol..
[48] A. Boyles,et al. National Institute of Environmental Health Sciences , 2008 .
[49] Hilmar Lapp,et al. Overview of FEED, the Feeding Experiments End-user Database , 2011, Integrative and comparative biology.
[50] Alan Ruttenberg,et al. Life sciences on the Semantic Web: the Neurocommons and beyond , 2009, Briefings Bioinform..
[51] Damian Smedley,et al. MouseFinder: Candidate disease genes from mouse phenotype data , 2012, Human mutation.
[52] N. Pierce. Origin of Species , 1914, Nature.
[53] Jeremy A. Miller,et al. Linking of digital images to phylogenetic data matrices using a morphological ontology. , 2007, Systematic biology.
[54] Damian Smedley,et al. PhenoDigm: analyzing curated annotations to associate animal models with human diseases , 2013, Database J. Biol. Databases Curation.
[55] R. Murray,et al. Research at the intersection of the physical and life sciences. , 2010, Analytical chemistry.
[56] Michelle Rucker,et al. Encyclopedia of Life , 2014 .
[57] Caleb Webber,et al. Phenotype Ontologies and Cross-Species Analysis for Translational Research , 2014, PLoS genetics.
[58] Ibrahim Emam,et al. ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression , 2008, Nucleic Acids Res..
[59] David Houle,et al. Numbering the hairs on our heads: The shared challenge and promise of phenomics , 2010, Proceedings of the National Academy of Sciences.
[60] Barry Smith,et al. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses , 2012, Plant & cell physiology.
[61] Kei-Hoi Cheung,et al. Advancing translational research with the Semantic Web , 2007, BMC Bioinformatics.
[62] J. Blake,et al. Providing the Missing Link: the Exposure Science Ontology ExO , 2012, Environmental science & technology.
[63] Robert B Trelease,et al. Anatomical reasoning in the informatics age: Principles, ontologies, and agendas. , 2006, Anatomical record. Part B, New anatomist.
[64] Katja C. Seltmann,et al. A Gross Anatomy Ontology for Hymenoptera , 2010, PloS one.
[65] Damian Smedley,et al. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. , 2013, F1000Research.
[66] Yasser Aboelkassem,et al. Selective pumping in a network: insect-style microscale flow transport , 2013, Bioinspiration & biomimetics.
[67] Ü. Niinemets. A review of light interception in plant stands from leaf to canopy in different plant functional types and in species with varying shade tolerance , 2010, Ecological Research.
[68] G. Bejerano,et al. A "forward genomics" approach links genotype to phenotype using independent phenotypic losses among related species. , 2012, Cell reports.
[69] Jeyakumar Natarajan,et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task , 2013, Database J. Biol. Databases Curation.
[70] Damian Smedley,et al. Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome , 2014, Science Translational Medicine.
[71] U. Yazdani,et al. The semaphorins , 2006, Genome Biology.
[72] S. Hsu,et al. Semaphorin signaling facilitates cleft formation in the developing salivary gland , 2007, Development.
[73] Paul N. Schofield,et al. PhenomeNET: a whole-phenome approach to disease gene discovery , 2011, Nucleic acids research.
[74] Damian Smedley,et al. Improved exome prioritization of disease genes through cross-species phenotype comparison , 2014, Genome research.
[75] Paula M. Mabee,et al. Phenex: Ontological Annotation of Phenotypic Diversity , 2010, PloS one.
[76] P. Robinson,et al. The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. , 2008, American journal of human genetics.
[77] Anne E. Thessen,et al. Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life , 2014, PloS one.
[78] Elio Rossi,et al. Policy , 2007, Evidence-based Complementary and Alternative Medicine : eCAM.
[79] D. Weigel,et al. Developmental genetics and new sequencing technologies: the rise of nonmodel organisms. , 2011, Developmental cell.
[80] Monte Westerfield,et al. Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation , 2009, PLoS biology.
[81] M. Ramírez,et al. Calculating structural complexity in phylogenies using ancestral ontologies , 2014, Cladistics : the international journal of the Willi Hennig Society.
[82] Janan T Eppig,et al. The mammalian phenotype ontology: enabling robust annotation and comparative analysis , 2009, Wiley interdisciplinary reviews. Systems biology and medicine.
[83] Judith A. Blake,et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon , 2014, Journal of Biomedical Semantics.
[84] R. Jenner,et al. The need for data standards in zoomorphology , 2013, Journal of morphology.
[85] S. Richter,et al. A research program for Evolutionary Morphology , 2014 .
[86] Dietrich Rebholz-Schuhmann,et al. Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases , 2012, PloS one.
[87] W. Atchley,et al. Molecular Evolution of the Myb Family of Transcription Factors: Evidence for Polyphyletic Origin , 1998, Journal of Molecular Evolution.
[88] 正木 茂夫,et al. DNA Data Bank of Japan(DDBJ)利用初心者講習会印象記 , 1988 .
[89] Deanna M. Church,et al. ClinVar: public archive of relationships among sequence variation and human phenotype , 2013, Nucleic Acids Res..
[90] John M. Hancock,et al. Using ontologies to describe mouse phenotypes , 2004, Genome Biology.
[91] J. Balhoff,et al. Time to change how we describe biodiversity. , 2012, Trends in ecology & evolution.
[92] Vincent Laudet,et al. The "street light syndrome", or how protein taxonomy can bias experimental manipulations. , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.
[93] Anne E. Trefethen,et al. Toward interoperable bioscience data , 2012, Nature Genetics.
[94] Thomas G. Dietterich,et al. Next-generation phenomics for the Tree of Life , 2013, PLoS currents.