Quantifying dissipation using fluctuating currents

[1]  G. Zachmann,et al.  Stochastic methods , 2020, Cross-Layer Reliability of Computing Systems.

[2]  H. Woodrow,et al.  : A Review of the , 2018 .

[3]  C. Broedersz,et al.  Nonequilibrium Scaling Behavior in Driven Soft Biological Assemblies. , 2018, Physical review letters.

[4]  Simone Pigolotti,et al.  Mapping of uncertainty relations between continuous and discrete time. , 2017, Physical review. E.

[5]  Federico S. Gnesotto,et al.  Broken detailed balance and non-equilibrium dynamics in living systems: a review , 2017, Reports on progress in physics. Physical Society.

[6]  C. Broeck,et al.  Discrete-time thermodynamic uncertainty relation , 2017, 1708.07032.

[7]  U. Seifert Stochastic thermodynamics: From principles to the cost of precision , 2017, Physica A: Statistical Mechanics and its Applications.

[8]  Todd R. Gingrich,et al.  Proof of the finite-time thermodynamic uncertainty relation for steady-state currents. , 2017, Physical review. E.

[9]  C. Broedersz,et al.  Nonequilibrium dynamics of probe filaments in actin-myosin networks. , 2017, Physical Review E.

[10]  Aidan I Brown,et al.  Allocating dissipation across a molecular machine cycle to maximize flux , 2017, Proceedings of the National Academy of Sciences.

[11]  J. Neu,et al.  Fluctuation loops in noise-driven linear dynamical systems. , 2017, Physical Review E.

[12]  F. Ritort,et al.  Finite-time generalization of the thermodynamic uncertainty relation. , 2017, Physical review. E.

[13]  A. C. Barato,et al.  Universal bound on the efficiency of molecular motors , 2016, 1609.08046.

[14]  Grant M. Rotskoff,et al.  Inferring dissipation from current fluctuations , 2016, 1609.07131.

[15]  Veikko F. Geyer,et al.  Broken detailed balance at mesoscopic scales in active biological systems , 2016, Science.

[16]  Julien Tailleur,et al.  How Far from Equilibrium Is Active Matter? , 2016, Physical review letters.

[17]  C. Broedersz,et al.  Broken Detailed Balance of Filament Dynamics in Active Networks. , 2016, Physical review letters.

[18]  D. Bedeaux,et al.  Entropy production in mesoscopic stochastic thermodynamics: nonequilibrium kinetic cycles driven by chemical potentials, temperatures, and mechanical forces , 2016, Journal of physics. Condensed matter : an Institute of Physics journal.

[19]  Todd R. Gingrich,et al.  Dissipation Bounds All Steady-State Current Fluctuations. , 2015, Physical review letters.

[20]  Udo Seifert,et al.  Universal bounds on current fluctuations. , 2015, Physical review. E.

[21]  É. Fodor,et al.  Nonequilibrium dissipation in living oocytes , 2015, 1511.00921.

[22]  L. Conti,et al.  Energy repartition for a harmonic chain with local reservoirs. , 2015, Physical review. E, Statistical, nonlinear, and soft matter physics.

[23]  J. Noh,et al.  Hidden entropy production by fast variables. , 2015, Physical review. E, Statistical, nonlinear, and soft matter physics.

[24]  Udo Seifert,et al.  Thermodynamic uncertainty relation for biomolecular processes. , 2015, Physical review letters.

[25]  É. Roldán Irreversibility and Dissipation in Microscopic Systems , 2014 .

[26]  Matteo Pasquali,et al.  High-resolution mapping of intracellular fluctuations using carbon nanotubes , 2014, Science.

[27]  Dmitri Petrov,et al.  Universal features in the energetics of symmetry breaking , 2013, Nature Physics.

[28]  S. Ramaswamy,et al.  Hydrodynamics of soft active matter , 2013 .

[29]  S. Ciliberto,et al.  Heat flux and entropy produced by thermal fluctuations. , 2013, Physical review letters.

[30]  U. Seifert,et al.  Noninvasive measurement of dissipation in colloidal systems. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

[31]  U. Seifert Stochastic thermodynamics, fluctuation theorems and molecular machines , 2012, Reports on progress in physics. Physical Society.

[32]  C. Jarzynski Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale , 2011 .

[33]  M. Esposito,et al.  Three faces of the second law. II. Fokker-Planck formulation. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[34]  M. Esposito,et al.  Three faces of the second law. I. Master equation formulation. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[35]  Klaus Lehnertz,et al.  Kernel-based regression of drift and diffusion coefficients of stochastic processes , 2009 .

[36]  Thomas Speck,et al.  Fluctuation-dissipation theorem in nonequilibrium steady states , 2009, 0907.5478.

[37]  G. Crooks,et al.  Length of time's arrow. , 2008, Physical review letters.

[38]  H. Touchette The large deviation approach to statistical mechanics , 2008, 0804.0327.

[39]  J. Weiss Fluctuation properties of steady-state Langevin systems. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[40]  K. Mallick,et al.  Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor. , 2007, Physical review letters.

[41]  R. Zia,et al.  Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states , 2007, cond-mat/0701763.

[42]  F. MacKintosh,et al.  Nonequilibrium Mechanics of Active Cytoskeletal Networks , 2007, Science.

[43]  V. Lecomte,et al.  Thermodynamic Formalism for Systems with Markov Dynamics , 2006, cond-mat/0606211.

[44]  C. Jarzynski,et al.  Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies , 2005, Nature.

[45]  Takahiro Harada,et al.  Equality connecting energy dissipation with a violation of the fluctuation-response relation. , 2005, Physical review letters.

[46]  J. Lukkarinen,et al.  Fourier's Law for a Harmonic Crystal with Self-Consistent Stochastic Reservoirs , 2003, math-ph/0307035.

[47]  H. Kantz,et al.  Nonequilibrium physics meets time series analysis: Measuring probability currents from data , 2003 .

[48]  A J Hudspeth,et al.  Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[49]  H. Qian Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.

[50]  A. Bowman,et al.  Applied smoothing techniques for data analysis : the kernel approach with S-plus illustrations , 1999 .

[51]  G. Crooks Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences. , 1999, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[52]  J. Lebowitz,et al.  A Gallavotti–Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics , 1998, cond-mat/9811220.

[53]  Hong Qian,et al.  Vector Field Formalism and Analysis for a Class of Thermal Ratchets , 1998 .

[54]  J. Kurchan Fluctuation theorem for stochastic dynamics , 1997, cond-mat/9709304.

[55]  K. Sekimoto Kinetic Characterization of Heat Bath and the Energetics of Thermal Ratchet Models , 1997 .

[56]  M. C. Jones,et al.  A reliable data-based bandwidth selection method for kernel density estimation , 1991 .

[57]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[58]  E. Lieb,et al.  Properties of a Harmonic Crystal in a Stationary Nonequilibrium State , 1967 .

[59]  M. Mézard,et al.  Journal of Statistical Mechanics: theory and experiment , 2019 .

[60]  J. P. Garrahan,et al.  Inferring dissipation from current fluctuations , 2017 .

[61]  H. Kile,et al.  Bandwidth Selection in Kernel Density Estimation , 2010 .

[62]  Joshua G. Hale,et al.  Journal of the Royal Statistical Society Notes on the Submission of Papers , 2005 .

[63]  S. Sheather Density Estimation , 2004 .

[64]  Ken Sekimoto,et al.  Langevin Equation and Thermodynamics , 1998 .

[65]  J. Herskowitz,et al.  Proceedings of the National Academy of Sciences, USA , 1996, Current Biology.

[66]  W. Ebeling Stochastic Processes in Physics and Chemistry , 1995 .

[67]  Physical Review Letters 63 , 1989 .

[68]  R. Kubo The fluctuation-dissipation theorem , 1966 .

[69]  THE JOURNAL OF PHYSICAL CHEMISTRY B , 2022 .