Ngram-Derived Pattern Recognition for the Detection and Prediction of Epileptic Seizures

This work presents a new method that combines symbol dynamics methodologies with an Ngram algorithm for the detection and prediction of epileptic seizures. The presented approach specifically applies Ngram-based pattern recognition, after data pre-processing, with similarity metrics, including the Hamming distance and Needlman-Wunsch algorithm, for identifying unique patterns within epochs of time. Pattern counts within each epoch are used as measures to determine seizure detection and prediction markers. Using 623 hours of intracranial electrocorticogram recordings from 21 patients containing a total of 87 seizures, the sensitivity and false prediction/detection rates of this method are quantified. Results are quantified using individual seizures within each case for training of thresholds and prediction time windows. The statistical significance of the predictive power is further investigated. We show that the method presented herein, has significant predictive power in up to 100% of temporal lobe cases, with sensitivities of up to 70–100% and low false predictions (dependant on training procedure). The cases of highest false predictions are found in the frontal origin with 0.31–0.61 false predictions per hour and with significance in 18 out of 21 cases. On average, a prediction sensitivity of 93.81% and false prediction rate of approximately 0.06 false predictions per hour are achieved in the best case scenario. This compares to previous work utilising the same data set that has shown sensitivities of up to 40–50% for a false prediction rate of less than 0.15/hour.

[1]  Christofer Toumazou,et al.  The WiNAM project: Neural data analysis with applications to epilespy , 2010, 2010 Biomedical Circuits and Systems Conference (BioCAS).

[2]  A. Schulze-Bonhage,et al.  How well can epileptic seizures be predicted? An evaluation of a nonlinear method. , 2003, Brain : a journal of neurology.

[3]  Anil K. Jain,et al.  Statistical Pattern Recognition: A Review , 2000, IEEE Trans. Pattern Anal. Mach. Intell..

[4]  A. David Edwards,et al.  Assessment of Neonatal Encephalopathy by Amplitude-integrated Electroencephalography , 1999, Pediatrics.

[5]  David M. Himes,et al.  Prediction of seizure likelihood with a long-term, implanted seizure advisory system in patients with drug-resistant epilepsy: a first-in-man study , 2013, The Lancet Neurology.

[6]  L. D. de Vries,et al.  Amplitude integrated EEG 3 and 6 hours after birth in full term neonates with hypoxic–ischaemic encephalopathy , 1999, Archives of disease in childhood. Fetal and neonatal edition.

[7]  Weidong Zhou,et al.  Epileptic Seizure Detection Using Lacunarity and Bayesian Linear Discriminant Analysis in Intracranial EEG , 2013, IEEE Transactions on Biomedical Engineering.

[8]  James R. Williamson,et al.  Seizure prediction using EEG spatiotemporal correlation structure , 2012, Epilepsy & Behavior.

[9]  Satanjeev Banerjee,et al.  The Design, Implementation, and Use of the Ngram Statistics Package , 2003, CICLing.

[10]  A. Schulze-Bonhage,et al.  Do False Predictions of Seizures Depend on the State of Vigilance? A Report from Two Seizure‐Prediction Methods and Proposed Remedies , 2006, Epilepsia.

[11]  K. Eftaxias,et al.  Are Epileptic Seizures Quakes of the Brain? An Approach by Means of Nonextensive Tsallis Statistics , 2011, 1110.2169.

[12]  Shalabh Gupta,et al.  Identification of statistical patterns in complex systems via symbolic time series analysis. , 2006, ISA transactions.

[13]  Jens Timmer,et al.  Statistical validation of event predictors: a comparative study based on the field of seizure prediction. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

[14]  Timothy G. Constandinou,et al.  Feature extraction using first and second derivative extrema (FSDE) for real-time and hardware-efficient spike sorting , 2013, Journal of Neuroscience Methods.

[15]  Lee M. Hively,et al.  ROBUST DETECTION OF DYNAMICAL CHANGE IN SCALP EEG , 1999 .

[16]  A. Schulze-Bonhage,et al.  The seizure prediction characteristic: a general framework to assess and compare seizure prediction methods , 2003, Epilepsy & Behavior.

[17]  M. N. Shanmukha Swamy,et al.  Morphology-Based Automatic Seizure Detector for Intracerebral EEG Recordings , 2012, IEEE Transactions on Biomedical Engineering.

[18]  A. Schulze-Bonhage,et al.  The role of high-quality EEG databases in the improvement and assessment of seizure prediction methods , 2011, Epilepsy & Behavior.

[19]  Lojini Logesparan,et al.  Optimal features for online seizure detection , 2012, Medical & Biological Engineering & Computing.

[20]  Gordon Lightbody,et al.  An evaluation of automated neonatal seizure detection methods , 2005, Clinical Neurophysiology.

[21]  Kaspar Anton Schindler,et al.  Forbidden ordinal patterns of periictal intracranial EEG indicate deterministic dynamics in human epileptic seizures , 2011, Epilepsia.

[22]  C. Finney,et al.  A review of symbolic analysis of experimental data , 2003 .

[23]  G B Boylan,et al.  Non-expert use of the cerebral function monitor for neonatal seizure detection , 2004, Archives of disease in childhood. Fetal and neonatal edition.

[24]  J. Gotman,et al.  Seizure prediction in patients with mesial temporal lobe epilepsy using EEG measures of state similarity , 2013, Clinical Neurophysiology.

[25]  Yoshua Bengio,et al.  A Neural Probabilistic Language Model , 2003, J. Mach. Learn. Res..

[26]  Arthur Petrosian,et al.  Kolmogorov complexity of finite sequences and recognition of different preictal EEG patterns , 1995, Proceedings Eighth IEEE Symposium on Computer-Based Medical Systems.

[27]  A. Schulze-Bonhage,et al.  Anticipating the unobserved: Prediction of subclinical seizures , 2011, Epilepsy & Behavior.

[28]  S. B. Needleman,et al.  A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins , 1989 .

[29]  Robert S Fisher,et al.  An automated drug delivery system for focal epilepsy , 2000, Epilepsy Research.

[30]  Paul R. Cohen,et al.  An Unsupervised Algorithm for Segmenting Categorical Timeseries into Episodes , 2002, Pattern Detection and Discovery.

[31]  V. Protopopescu,et al.  Timely detection of dynamical change in scalp EEG signals. , 2000, Chaos.

[32]  R. Grebe,et al.  Automated neonatal seizure detection: A multistage classification system through feature selection based on relevance and redundancy analysis , 2006, Clinical Neurophysiology.

[33]  Aloka S. Amarakone,et al.  Rapid Cooling Aborts Seizure‐Like Activity in Rodent Hippocampal‐Entorhinal Slices , 2000, Epilepsia.

[34]  V. Protopopescu,et al.  Enhancements in Epilepsy Forewarning via Phase-Space Dissimilarity , 2005, Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society.

[35]  Bin He,et al.  A rule-based seizure prediction method for focal neocortical epilepsy , 2012, Clinical Neurophysiology.

[36]  F. Mormann,et al.  Seizure prediction: the long and winding road. , 2007, Brain : a journal of neurology.

[37]  F. Takens Detecting strange attractors in turbulence , 1981 .

[38]  J. Kurinczuk,et al.  Antepartum risk factors for newborn encephalopathy: the Western Australian case-control study , 1998 .

[39]  K. Keller,et al.  Ordinal analysis of EEG time series , 2005 .

[40]  Christofer Toumazou,et al.  Empirical Mode Decomposition: Real-Time Implementation and Applications , 2013, J. Signal Process. Syst..

[41]  Andreas Schulze-Bonhage,et al.  Testing statistical significance of multivariate time series analysis techniques for epileptic seizure prediction. , 2006, Chaos.

[42]  Reza Tafreshi,et al.  Predicting Epileptic Seizures in Scalp EEG Based on a Variational Bayesian Gaussian Mixture Model of Zero-Crossing Intervals , 2013, IEEE Transactions on Biomedical Engineering.

[43]  A. Schulze-Bonhage,et al.  Comparison of three nonlinear seizure prediction methods by means of the seizure prediction characteristic , 2004 .

[44]  Jens Timmer,et al.  The EPILEPSIAE database: An extensive electroencephalography database of epilepsy patients , 2012, Epilepsia.

[45]  Ivan Osorio,et al.  Automated seizure abatement in humans using electrical stimulation , 2005, Annals of neurology.