论文信息 - Gene expression profiling for hematopoietic cell culture

Gene expression profiling for hematopoietic cell culture

[1] Charles E. Heckler,et al. Applied Multivariate Statistical Analysis , 2005, Technometrics.

[2] G. Stephanopoulos,et al. Production of isoleucine by overexpression of ilvA in a Corynebacterium lactofermentum threonine producer , 1995, Applied Microbiology and Biotechnology.

[3] Liangzhi Xie,et al. Applications of improved stoichiometric model in medium design and fed-batch cultivation of animal cells in bioreactor , 2004, Cytotechnology.

[4] S. Dudoit,et al. STATISTICAL METHODS FOR IDENTIFYING DIFFERENTIALLY EXPRESSED GENES IN REPLICATED cDNA MICROARRAY EXPERIMENTS , 2002 .

[5] Y. Yamashita,et al. Identification of myelodysplastic syndrome-specific genes by DNA microarray analysis with purified hematopoietic stem cell fraction. , 2001, Blood.

[6] A D Long,et al. Improved Statistical Inference from DNA Microarray Data Using Analysis of Variance and A Bayesian Statistical Framework , 2001, The Journal of Biological Chemistry.

[7] Pierre Baldi,et al. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes , 2001, Bioinform..

[8] S. Dequin,et al. Global gene expression during short‐term ethanol stress in Saccharomyces cerevisiae , 2001, FEBS letters.

[9] G. Churchill,et al. Experimental design for gene expression microarrays. , 2001, Biostatistics.

[10] Farren J. Isaacs,et al. Computational studies of gene regulatory networks: in numero molecular biology , 2001, Nature Reviews Genetics.

[11] W. Bentley,et al. Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield. , 2001, Biotechnology and bioengineering.

[12] Marcel J. T. Reinders,et al. A Comparison of Genetic Network Models , 2000, Pacific Symposium on Biocomputing.

[13] A Nagy,et al. Stem cell bioengineering. , 2001, Annual review of biomedical engineering.

[14] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.

[15] T. Chandra,et al. Statistical optimization of medium components for enhanced riboflavin production by a UV-mutant of Eremothecium ashbyii , 2000 .

[16] S. Schuster,et al. Activation of the human asparagine synthetase gene by the amino acid response and the endoplasmic reticulum stress response pathways occurs by common genomic elements. , 2000, The Journal of biological chemistry.

[17] G. A. Whitmore,et al. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[18] Neal S. Holter,et al. Fundamental patterns underlying gene expression profiles: simplicity from complexity. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[19] M. Oh,et al. DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli. , 2000, Metabolic engineering.

[20] G. Rutter,et al. Regulation of Mammalian Gene Expression by Glucose. , 2000, News in physiological sciences : an international journal of physiology produced jointly by the International Union of Physiological Sciences and the American Physiological Society.

[21] J. Ernst,et al. Identification and substrate specificity of a ferrichrome-type siderophore transporter (Arn1p) in Saccharomyces cerevisiae. , 2000, FEMS microbiology letters.

[22] F. Hesse,et al. Developments and improvements in the manufacturing of human therapeutics with mammalian cell cultures. , 2000, Trends in biotechnology.

[23] G. Sherlock. Analysis of large-scale gene expression data. , 2000, Current opinion in immunology.

[24] Daniel Pinkel,et al. Cancer cells, chemotherapy and gene clusters , 2000, Nature Genetics.

[25] Joshua M. Stuart,et al. MICROARRAY EXPERIMENTS : APPLICATION TO SPORULATION TIME SERIES , 1999 .

[26] D Weuster-Botz,et al. Experimental design for fermentation media development: statistical design or global random search? , 2000, Journal of bioscience and bioengineering.

[27] F Gòdia,et al. Improvement of CHO Cell Culture Medium Formulation: Simultaneous Substitution of Glucose and Glutamine , 2000, Biotechnology progress.

[28] C. Doering,et al. Amino acid deprivation induces translation of branched-chain alpha-ketoacid dehydrogenase kinase. , 2000, American journal of physiology. Cell physiology.

[29] B. Palsson,et al. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. , 2000, Biotechnology and bioengineering.

[30] Gary A. Churchill,et al. Analysis of Variance for Gene Expression Microarray Data , 2000, J. Comput. Biol..

[31] A. Bruhat,et al. Amino acid regulation of gene expression. , 2000, Current opinion in clinical nutrition and metabolic care.

[32] M Kennedy,et al. Strategies for improving fermentation medium performance: a review , 1999, Journal of Industrial Microbiology and Biotechnology.

[33] A. Milagres,et al. Solid-state fermentation for xylanase production by Thermoascus aurantiacus using response surface methodology , 1999, Applied Microbiology and Biotechnology.

[34] Leo A. Behie,et al. The development of a medium for the in vitro expansion of mammalian neural stem cells , 1999 .

[35] P. A. Felse,et al. Self-directing optimization of parameters for extracellular chitinase production by Trichoderma harzianum in batch mode , 1999 .

[36] D. Botstein,et al. Systematic changes in gene expression patterns following adaptive evolution in yeast. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[37] A. Patkar,et al. Application of factorial designs for optimization of cyclodextrin glycosyltransferase production from Klebsiella pneumoniae pneumoniae AS-22. , 1999, Biotechnology and bioengineering.

[38] J. Brameld,et al. Glucose and amino acids interact with hormones to control expression of insulin-like growth factor-I and growth hormone receptor mRNA in cultured pig hepatocytes. , 1999, The Journal of nutrition.

[39] T. Monks,et al. Induction of gadd153 mRNA by nutrient deprivation is overcome by glutamine. , 1999, The Biochemical journal.

[40] J. Mesirov,et al. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[41] S. Gygi,et al. Correlation between Protein and mRNA Abundance in Yeast , 1999, Molecular and Cellular Biology.

[42] G. Stephanopoulos. Metabolic fluxes and metabolic engineering. , 1999, Metabolic engineering.

[43] D. Botstein,et al. Exploring the new world of the genome with DNA microarrays , 1999, Nature Genetics.

[44] B. Palsson,et al. Toward Metabolic Phenomics: Analysis of Genomic Data Using Flux Balances , 1999, Biotechnology progress.

[45] Stéphane Mallat,et al. A Wavelet Tour of Signal Processing, 2nd Edition , 1999 .

[46] C M Kao,et al. Functional Genomic Technologies: Creating New Paradigms for Fundamental and Applied Biology , 1999, Biotechnology progress.

[47] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.

[48] M. Patel,et al. Regulation of mammalian pyruvate dehydrogenase alpha subunit gene expression by glucose in HepG2 cells. , 1998, The Biochemical journal.

[49] D. Botstein,et al. The transcriptional program of sporulation in budding yeast. , 1998, Science.

[50] A. Lavoinne,et al. Glutamine and regulation of gene expression in rat hepatocytes: the role of cell swelling. , 1998, Biochimie.

[51] P. Zandstra,et al. Advances in hematopoietic stem cell culture. , 1998, Current opinion in biotechnology.

[52] S. Mallat. A wavelet tour of signal processing , 1998 .

[53] F. Gòdia,et al. Identification of key patterns in the metabolism of hybridoma cells in culture , 1997 .

[54] P. Brown,et al. Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.

[55] W M Miller,et al. Culture materials affect ex vivo expansion of hematopoietic progenitor cells. , 1997, Journal of biomedical materials research.

[56] D. I. Wang,et al. Material balance studies on animal cell metabolism using a stoichiometrically based reaction network , 2000, Biotechnology and bioengineering.

[57] H. Towle. Metabolic Regulation of Gene Transcription in Mammals (*) , 1995, The Journal of Biological Chemistry.

[58] G. Stephanopoulos,et al. Intracellular flux analysis in hybridomas using mass balances and in vitro 13C nmr , 1995, Biotechnology and bioengineering.

[59] J. Liu,et al. Metabolic regulation of gene transcription. , 1994, The Journal of nutrition.

[60] D. I. Wang,et al. Stoichiometric analysis of animal cell growth and its application in medium design , 1994, Biotechnology and bioengineering.

[61] E. Papoutsakis,et al. Serum‐free media for cultures of primitive and mature hematopoietic cells , 1994, Biotechnology and bioengineering.

[62] M. Kilberg,et al. Amino acid‐regulated gene expression in eukaryotic cells , 1994, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[63] G. Stephanopoulos,et al. Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction , 2000, Biotechnology and bioengineering.

[64] E. Papoutsakis,et al. Reduced oxygen tension increases hematopoiesis in long-term culture of human stem and progenitor cells from cord blood and bone marrow. , 1992, Experimental hematology.

[65] G. Bell,et al. Mammalian facilitative glucose transporter family: structure and molecular regulation. , 1992, Annual review of physiology.

[66] E. Hölttä,et al. Deprivation of a single amino acid induces protein synthesis-dependent increases in c-jun, c-myc, and ornithine decarboxylase mRNAs in Chinese hamster ovary cells , 1990, Molecular and cellular biology.

[67] G. W. Milligan,et al. A Study of the Comparability of External Criteria for Hierarchical Cluster Analysis. , 1986, Multivariate behavioral research.

[68] S. Reuveny,et al. Factors affecting cell growth and monoclonal antibody production in stirred reactors. , 1986, Journal of immunological methods.

[69] William M. Rand,et al. Objective Criteria for the Evaluation of Clustering Methods , 1971 .

[70] R. Cattell. The Scree Test For The Number Of Factors. , 1966, Multivariate behavioral research.

[71] N. L. Johnson,et al. Multivariate Analysis , 1958, Nature.

[72] G. Saccone,et al. Sex Determination in Flies, Fruitflies and Butterflies , 2002, Genetica.

[73] F. Marec,et al. Sex Chromosome Differentiation in Some Species of Lepidoptera (Insecta) , 1997, Chromosome Research.

[74] F. Müller-Holtkamp. The sex-lethal gene homologue in Chrysomya rufifacies is highly conserved in sequence and exon-intron organization , 1995, Journal of Molecular Evolution.

[75] R. E. Page,et al. The Gene csd Is the Primary Signal for Sexual Development in the Honeybee and Encodes an SR-Type Protein , 2003, Cell.

[76] M. Kuroda,et al. Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster. , 2003, Genetics.

[77] J. Lucchesi,et al. Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[78] T. Shimada,et al. Analysis of the biological functions of a doublesex homologue in Bombyx mori , 2003, Development Genes and Evolution.

[79] A. Arnold,et al. Neural, not gonadal, origin of brain sex differences in a gynandromorphic finch , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[80] S. W. Emmons,et al. Genetic basis of male sexual behavior. , 2003, Journal of neurobiology.

[81] Jean-René Martin,et al. Neuroendocrine control of a sexually dimorphic behavior by a few neurons of the pars intercerebralis in Drosophila , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[82] B. S. Baker,et al. Sex comes in from the cold: the integration of sex and pattern. , 2002, Trends in genetics : TIG.

[83] J. Hodgkin. The remarkable ubiquity of DM domain factors as regulators of sexual phenotype: ancestry or aptitude? , 2002, Genes & development.

[84] Gregory A. Wray,et al. Evolution of the Gene Network Underlying Wing Polyphenism in Ants , 2002, Science.

[85] T. Cline,et al. A host–parasite interaction rescues Drosophila oogenesis defects , 2002, Nature.

[86] B. S. Baker,et al. Sex-Specific Deployment of FGF Signaling in Drosophila Recruits Mesodermal Cells into the Male Genital Imaginal Disc , 2002, Cell.

[87] Shuichi Asakawa,et al. DMY is a Y-specific DM-domain gene required for male development in the medaka fish , 2002, Nature.

[88] Barbara P. Rattner,et al. The roX genes encode redundant male‐specific lethal transcripts required for targeting of the MSL complex , 2002, The EMBO journal.

[89] F. Ohbayashi,et al. The mechanism of sex-specific splicing at the doublesex gene is different between Drosophila melanogaster and Bombyx mori. , 2001, Insect biochemistry and molecular biology.

[90] V. Pirrotta,et al. Painting of fourth, a chromosome-specific protein in Drosophila , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[91] B. S. Baker,et al. The Drosophila sex determination hierarchy modulates wingless and decapentaplegic signaling to deploy dachshund sex-specifically in the genital imaginal disc. , 2001, Development.

[92] G. Hurst,et al. Inherited microorganisms, sex-specific virulence and reproductive parasitism. , 2001, Trends in parasitology.

[93] F. Ohbayashi,et al. A homologue of the Drosophila doublesex gene is transcribed into sex-specific mRNA isoforms in the silkworm, Bombyx mori. , 2001, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

[94] C. S. Raymond,et al. Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation. , 2000, Genes & development.

[95] B. S. Baker,et al. Origin and evolution of the regulatory gene male-specific lethal-3. , 2000, Molecular biology and evolution.

[96] G. Theraulaz,et al. Inspiration for optimization from social insect behaviour , 2000, Nature.

[97] A. Paululat,et al. Sequence conservation and expression of the sex-lethal homologue in the fly Megaselia scalaris. , 2000, Genome.

[98] K. Hartfelder. Insect juvenile hormone: from "status quo" to high society. , 2000, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.

[99] M. J. Scott,et al. MSL1 plays a central role in assembly of the MSL complex, essential for dosage compensation in Drosophila , 2000, The EMBO journal.

[100] T Matsumoto,et al. Soldier caste-specific gene expression in the mandibular glands of Hodotermopsis japonica (Isoptera: termopsidae). , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[101] J. Carlson,et al. The dare gene: steroid hormone production, olfactory behavior, and neural degeneration in Drosophila. , 1999, Development.

[102] B. S. Baker,et al. The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila. , 1999, Molecular cell.

[103] D. Hilfiker-Kleiner,et al. The male-determining activity on the Y chromosome of the housefly (Musca domestica L.) consists of separable elements. , 1998, Genetics.

[104] M. Kuroda,et al. Complex formation by the Drosophila MSL proteins: role of the MSL2 RING finger in protein complex assembly , 1998, The EMBO journal.

[105] G. Saccone,et al. The Ceratitis capitata homologue of the Drosophila sex-determining gene sex-lethal is structurally conserved, but not sex-specifically regulated. , 1998, Development.

[106] D. Hilfiker-Kleiner,et al. Sex-lethal, the master sex-determining gene in Drosophila, is not sex-specifically regulated in Musca domestica. , 1998, Development.

[107] M. Ashok,et al. Insect juvenile hormone resistance gene homology with the bHLH-PAS family of transcriptional regulators. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[108] C. S. Raymond,et al. Evidence for evolutionary conservation of sex-determining genes , 1998, Nature.

[109] A. Arnold. Experimental Analysis of Sexual Differentiation of the Zebra Finch Brain , 1997, Brain Research Bulletin.

[110] P. Sharp,et al. Ultraspiracle: an invertebrate nuclear receptor for juvenile hormones. , 1997, Proceedings of the National Academy of Sciences of the United States of America.