Promoter microsatellites as modulators of human gene expression.
暂无分享,去创建一个
N. Gemmell | E. Buschiazzo | Sterling Sawaya | Andrew T. M. Bagshaw | Emmanuel Buschiazzo | Neil J Gemmell | Sterling M Sawaya | Andrew T Bagshaw | A. Bagshaw
[1] Liqing Zhang,et al. Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5'-UTR region. , 2008, Gene.
[2] B. Plunkett,et al. Variation in dinucleotide (GT) repeat sequence in the first exon of the STAT6 gene is associated with atopic asthma and differentially regulates the promoter activity in vitro , 2004, Journal of Medical Genetics.
[3] J. Mallet,et al. Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite. , 2001, Human molecular genetics.
[4] Marika Paaver,et al. A functional NOS1 promoter polymorphism interacts with adverse environment on functional and dysfunctional impulsivity , 2011, Psychopharmacology.
[5] G. Koren,et al. Purification and preliminary characterization of a cardiac Kv1.5 repressor element binding factor. , 1999, Circulation research.
[6] S. Snyder,et al. Behavioural abnormalities in male mice lacking neuronal nitric oxide synthase , 1995, Nature.
[7] Alexander Rich,et al. Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae , 2007, Proceedings of the National Academy of Sciences.
[8] H. Orzechowski,et al. Regulation of the major isoform of human endothelin-converting enzyme-1 by a strong housekeeping promoter modulated by polymorphic microsatellites , 2003, Journal of hypertension.
[9] Y. Kohwi,et al. Altered gene expression correlates with DNA structure. , 1991, Genes & development.
[10] Miriam K. Konkel,et al. Genome analysis of the platypus reveals unique signatures of evolution , 2008, Nature.
[11] J. Shklover,et al. Quadruplex structures of muscle gene promoter sequences enhance in vivo MyoD-dependent gene expression , 2010, Nucleic acids research.
[12] S. Wölfl,et al. Transcription of the human corticotropin-releasing hormone gene in NPLC cells is correlated with Z-DNA formation. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[13] D. Hood,et al. Microsatellite instability regulates transcription factor binding and gene expression. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[14] P. Gruss,et al. Pax6 Modulates the Dorsoventral Patterning of the Mammalian Telencephalon , 2000, The Journal of Neuroscience.
[15] Hiromitsu Shimizu,et al. A microsatellite repeat in the promoter of the N-methyl-D-aspartate receptor 2A subunit (GRIN2A) gene suppresses transcriptional activity and correlates with chronic outcome in schizophrenia. , 2003, Pharmacogenetics.
[16] Richard Moxon,et al. Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. , 2006, Annual review of genetics.
[17] Judith Roth,et al. A polymorphic microsatellite that mediates induction of PIG3 by p53 , 2002, Nature Genetics.
[18] J. Shelhamer,et al. Characterization of the promoter for the human 85 kDa cytosolic phospholipase A2 gene. , 1994, Nucleic acids research.
[19] E. Rassart,et al. Triplex-forming oligonucleotides with unexpected affinity for a nontargeted GA repeat sequence. , 1997, Antisense & nucleic acid drug development.
[20] B. Johnston,et al. The S1-sensitive form of d(C-T)n.d(A-G)n: chemical evidence for a three-stranded structure in plasmids. , 1988, Science.
[21] B. Lell,et al. DNA phasing by TA dinucleotide microsatellite length determines in vitro and in vivo expression of the gp91phox subunit of NADPH oxidase and mediates protection against severe malaria. , 2004, The Journal of infectious diseases.
[22] S. Wölfl,et al. Transcription of human c‐myc in permeabilized nuclei is associated with formation of Z‐DNA in three discrete regions of the gene. , 1992, The EMBO journal.
[23] B. Pakkenberg,et al. Spatiotemporal Distribution of PAX6 and MEIS2 Expression and Total Cell Numbers in the Ganglionic Eminence in the Early Developing Human Forebrain , 2010, Developmental Neuroscience.
[24] A. Meyer-Lindenberg,et al. Genetic variants in AVPR1A linked to autism predict amygdala activation and personality traits in healthy humans , 2009, Molecular Psychiatry.
[25] M. Achtman,et al. Variable expression of the Opc outer membrane protein in Neisseria meningitidis is caused by size variation of a promoter containing poly‐cytidine , 1994, Molecular microbiology.
[26] C. Panhuysen,et al. Uterine leiomyomata and decreased height: a common HMGA2 predisposition allele , 2009, Human Genetics.
[27] C. Nguyen,et al. Benzoquinoquinoxaline derivatives stabilize and cleave H-DNA and repress transcription downstream of a triplex-forming sequence. , 2005, Journal of molecular biology.
[28] K. Kim,et al. Roles of CCAAT/enhancer-binding protein and its binding site on repression and derepression of acetyl-CoA carboxylase gene. , 1994, The Journal of biological chemistry.
[29] C. Pang,et al. AC and AG dinucleotide repeats in the PAX6 P1 promoter are associated with high myopia , 2009, Molecular vision.
[30] Ann-Christine Ehlis,et al. Influence of functional variant of neuronal nitric oxide synthase on impulsive behaviors in humans. , 2009, Archives of general psychiatry.
[31] J. Kurth,et al. The effect of a promoter polymorphism on the transcription of nitric oxide synthase 1 and its relevance to Parkinson's disease , 2009, Journal of neuroscience research.
[32] K. Lesch,et al. The effect of a functional NOS1 promoter polymorphism on impulsivity is moderated by platelet MAO activity , 2010, Psychopharmacology.
[33] Laurence H. Hurley,et al. Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions. , 2008, Biochimie.
[34] O. Griffith,et al. Mammalian nitric oxide synthases. , 1999, Advances in enzymology and related areas of molecular biology.
[35] G. Gilkeson,et al. A GA microsatellite in the Fli1 promoter modulates gene expression and is associated with systemic lupus erythematosus patients without nephritis , 2010, Arthritis research & therapy.
[36] S. Brahmachari,et al. Poly purine.pyrimidine sequences upstream of the beta-galactosidase gene affect gene expression in Saccharomyces cerevisiae , 2001, BMC Molecular Biology.
[37] G. Gilkeson,et al. Ets factors and a newly identified polymorphism regulate Fli1 promoter activity in lymphocytes. , 2008, Molecular immunology.
[38] F. Moreau,et al. Mutational analysis of the promoter region of the porA gene of Neisseria meningitidis. , 1999, Gene.
[39] F. Koch-Nolte,et al. DNA methylation and Z‐DNA formation as mediators of quantitative differences in the expression of alleles , 2001, Immunological reviews.
[40] S. Yip,et al. PAX6 Haplotypes Are Associated with High Myopia in Han Chinese , 2011, PloS one.
[41] V. Iyer,et al. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. , 1995, The EMBO journal.
[42] Nancy L Pedersen,et al. Genetic variation in the vasopressin receptor 1a gene (AVPR1A) associates with pair-bonding behavior in humans , 2008, Proceedings of the National Academy of Sciences.
[43] Michael V. Bland,et al. Trinucleotide repeat variants in the promoter of the thiopurine S-methyltransferase gene of patients exhibiting ultra-high enzyme activity , 2008, Pharmacogenetics and genomics.
[44] T. Krieg,et al. A purine-rich sequence in the human BM-40 gene promoter region is a prerequisite for maximum transcription. , 1995, Matrix biology : journal of the International Society for Matrix Biology.
[45] Guliang Wang,et al. Z-DNA, an active element in the genome. , 2007, Frontiers in bioscience : a journal and virtual library.
[46] D. Davidson,et al. The role of Pax-6 in eye and nasal development. , 1995, Development.
[47] Randy Z. Wu,et al. Positioned and G/C-capped poly(dA:dT) tracts associate with the centers of nucleosome-free regions in yeast promoters. , 2010, Genome research.
[48] J. Strobl,et al. Z-DNA formation in the rat growth hormone gene promoter region , 1990, Molecular and cellular biology.
[49] J. Dixon,et al. Z-DNA in the rat somatostatin gene. , 1985, The Journal of biological chemistry.
[50] Anthony J. Hannan. Tandem repeat polymorphisms : genetic plasticity, neural diversity and disease , 2012 .
[51] S. Shibahara,et al. Microsatellite polymorphism in the heme oxygenase-1 gene promoter is associated with susceptibility to emphysema. , 2000, American journal of human genetics.
[52] R. Memmott,et al. A novel G-quadruplex-forming GGA repeat region in the c-myb promoter is a critical regulator of promoter activity , 2008, Nucleic acids research.
[53] N. Gemmell,et al. Conservation of Human Microsatellites across 450 Million Years of Evolution , 2010, Genome biology and evolution.
[54] A. Rustighi,et al. A polypyrimidine/polypurine tract within the Hmga2 minimal promoter: a common feature of many growth-related genes. , 2002, Biochemistry.
[55] Xianjin Zhou,et al. Mutation responsible for the mouse pygmy phenotype in the developmentally regulated factor HMGI-C , 1995, Nature.
[56] S. Yip,et al. Association of PAX6 polymorphisms with high myopia in Han Chinese nuclear families. , 2009, Investigative ophthalmology & visual science.
[57] D. Loesch,et al. Unstable mutations in the FMR1 gene and the phenotypes. , 2012, Advances in experimental medicine and biology.
[58] J. Blackwell,et al. Evidence for a functional repeat polymorphism in the promoter of the human NRAMP1 gene that correlates with autoimmune versus infectious disease susceptibility , 1999, Journal of medical genetics.
[59] T. Mori,et al. Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA)·poly(dT) tracts in vivo , 2000 .
[60] D. Leach,et al. Secondary structures in d(CGG) and d(CCG) repeat tracts. , 1998, Journal of molecular biology.
[61] S. Israel,et al. Individual differences in allocation of funds in the dictator game associated with length of the arginine vasopressin 1a receptor RS3 promoter region and correlation between RS3 length and hippocampal mRNA , 2008, Genes, brain, and behavior.
[62] Matthieu Legendre,et al. Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability , 2009, Science.
[63] J. Jurka,et al. Microsatellites in different eukaryotic genomes: survey and analysis. , 2000, Genome research.
[64] Tom R. Gaunt,et al. Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height. , 2011, American journal of human genetics.
[65] R. Wells,et al. Topoisomerase mutants and physiological conditions control supercoiling and Z-DNA formation in vivo. , 1991, The Journal of biological chemistry.
[66] N. Gemmell,et al. Measuring Microsatellite Conservation in Mammalian Evolution with a Phylogenetic Birth–Death Model , 2012, Genome biology and evolution.
[67] P. Vourc'h,et al. A functional tetranucleotide (AAAT) polymorphism in an Alu element in the NF1 gene is associated with mental retardation , 2011, Neuroscience Letters.
[68] Karolin Luger,et al. Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure. , 2006, Journal of molecular biology.
[69] Larry J Young,et al. Microsatellite Instability Generates Diversity in Brain and Sociobehavioral Traits , 2005, Science.
[70] Y. Kashi,et al. Simple sequence repeats as advantageous mutators in evolution. , 2006, Trends in genetics : TIG.
[71] K. Lesch,et al. Regulation of PAX-6 gene transcription: alternate promoter usage in human brain. , 1998, Brain research. Molecular brain research.
[72] B. Suter,et al. Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo. , 2000, Nucleic acids research.
[73] L. Naylor,et al. d(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription. , 1990, Nucleic acids research.
[74] J. Yim,et al. The association between microsatellite polymorphisms in intron II of the human Toll-like receptor 2 gene and tuberculosis among Koreans , 2006, Genes and Immunity.
[75] P. Rashbass,et al. Influence of PAX6 Gene Dosage on Development: Overexpression Causes Severe Eye Abnormalities , 1996, Cell.
[76] D. King. Evolution of simple sequence repeats as mutable sites. , 2012, Advances in experimental medicine and biology.
[77] S. Elgin,et al. The capacity to form H-DNA cannot substitute for GAGA factor binding to a (CT)n*(GA)n regulatory site. , 2003, Nucleic acids research.
[78] J. Streelman,et al. Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. , 2002, Physiological genomics.
[79] P. Onkamo,et al. Musical Aptitude Is Associated with AVPR1A-Haplotypes , 2009, PloS one.
[80] Y. Xu,et al. Recruitment of SWI/SNF Complex Is Required for Transcriptional Activation of the SLC11A1 Gene during Macrophage Differentiation of HL-60 Cells* , 2011, The Journal of Biological Chemistry.
[81] A. Rich,et al. Transcription is associated with Z-DNA formation in metabolically active permeabilized mammalian cell nuclei. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[82] L. Borrmann,et al. Human HMGA2 promoter is coregulated by a polymorphic dinucleotide (TC)-repeat , 2003, Oncogene.
[83] G. Schroth,et al. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. , 1992, The Journal of biological chemistry.
[84] M. Götz,et al. The role of Pax6 in restricting cell migration between developing cortex and basal ganglia. , 1999, Development.
[85] K. Itoh,et al. BRG1 Interacts with Nrf2 To Selectively Mediate HO-1 Induction in Response to Oxidative Stress , 2006, Molecular and Cellular Biology.
[86] Navneet Matharu,et al. Vertebrate homologue of Drosophila GAGA factor. , 2010, Journal of molecular biology.
[87] Christian Dina,et al. AVPR1a and SLC6A4 Gene Polymorphisms Are Associated with Creative Dance Performance , 2005, PLoS genetics.
[88] C. Wadelius,et al. Two polypyrimidine tracts in the nitric oxide synthase 2 gene: similar regulatory sequences with different properties , 2010, Molecular Biology Reports.
[89] S. Elgin,et al. (CT)n (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene , 1993, Molecular and cellular biology.
[90] E. Segal,et al. Poly(da:dt) Tracts: Major Determinants of Nucleosome Organization This Review Comes from a Themed Issue on Protein-nucleic Acid Interactions Edited , 2022 .
[91] A. Rich,et al. A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[92] A. Kimura,et al. Transcriptional regulation of the human type I collagen alpha2 (COL1A2) gene by the combination of two dinucleotide repeats. , 1999, Gene.
[93] S. Tyekucheva,et al. The genome-wide determinants of human and chimpanzee microsatellite evolution. , 2007, Genome research.
[94] Y. Sasaguri,et al. Shortened microsatellite d(CA)21 sequence down‐regulates promoter activity of matrix metalloproteinase 9 gene , 1999, FEBS letters.
[95] K. Zänker,et al. Modulation of Epidermal Growth Factor Receptor Gene Transcription by a Polymorphic Dinucleotide Repeat in Intron 1* , 1999, The Journal of Biological Chemistry.
[96] V. Kulish,et al. Z-DNA-induced super-transport of energy within genomes , 2007 .
[97] A. Bernstein,et al. An immunological renal disease in transgenic mice that overexpress Fli-1, a member of the ets family of transcription factor genes , 1995, Molecular and cellular biology.
[98] Heng Li,et al. Human genomic Z-DNA segments probed by the Zα domain of ADAR1 , 2009, Nucleic acids research.
[99] S. Hannenhalli,et al. Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation , 2007, Nucleic acids research.
[100] T. Petes,et al. Control of Meiotic Recombination and Gene Expression in Yeast by a Simple Repetitive DNA Sequence That Excludes Nucleosomes , 1999, Molecular and Cellular Biology.
[101] A. Goodridge,et al. A CT repeat in the promoter of the chicken malic enzyme gene is essential for function at an alternative transcription start site. , 1998, Archives of biochemistry and biophysics.
[102] P. Manunta,et al. CA-Repeat polymorphism in intron 1 of HSD11B2 : effects on gene expression and salt sensitivity. , 2000, Hypertension.
[103] L. O'Brien,et al. Influence of a GT repeat element on shear stress responsiveness of the VWF gene promoter , 2008, Journal of thrombosis and haemostasis : JTH.
[104] S. Carson,et al. Phase variation of the gonococcal siderophore receptor FetA , 2000, Molecular microbiology.
[105] K. Zhao,et al. Cooperative Activity of BRG1 and Z-DNA Formation in Chromatin Remodeling , 2006, Molecular and Cellular Biology.
[106] A. Levine. p53, the Cellular Gatekeeper for Growth and Division , 1997, Cell.
[107] D. Levens,et al. The functional response of upstream DNA to dynamic supercoiling in vivo , 2008, Nature Structural &Molecular Biology.
[108] C. Freitag,et al. Association of a functional variant of neuronal nitric oxide synthase gene with self-reported impulsiveness, venturesomeness and empathy in male offenders , 2010, Journal of Neural Transmission.
[109] M. Castellazzi,et al. v-Jun downregulates the SPARC target gene by binding to the proximal promoter indirectly through Sp1/3 , 2003, Oncogene.
[110] Yoo-Jeong Han,et al. Naturally Extended CT · AG Repeats Increase H-DNA Structures and Promoter Activity in the Smooth Muscle Myosin Light Chain Kinase Gene , 2007, Molecular and Cellular Biology.
[111] P. Reitsma,et al. Unique distance- and DNA-turn-dependent interactions in the human protein C gene promoter confer submaximal transcriptional activity , 1999 .
[112] G. Wray,et al. Abundant raw material for cis-regulatory evolution in humans. , 2002, Molecular biology and evolution.
[113] K. Lesch,et al. Functional characterization of the human PAX3 gene regulatory region. , 1999, Genomics.
[114] E. Hattori,et al. Transcriptional activities of cholecystokinin promoter haplotypes and their relevance to panic disorder susceptibility , 2003, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.
[115] K. Struhl. Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[116] R. Sinden,et al. A Z-DNA sequence reduces slipped-strand structure formation in the myotonic dystrophy type 2 (CCTG)·(CAGG) repeat , 2009, Proceedings of the National Academy of Sciences.
[117] W. Pan,et al. Microsatellite polymorphism in promoter of heme oxygenase-1 gene is associated with susceptibility to coronary artery disease in type 2 diabetic patients , 2002, Human Genetics.
[118] M. Katahira,et al. An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction. , 2001, Journal of molecular biology.
[119] L. J. Peck,et al. Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence , 1985, Cell.
[120] K. Lesch,et al. A promoter-associated polymorphic repeat modulates PAX-6 expression in human brain. , 1998, Biochemical and biophysical research communications.
[121] C. Lee,et al. Dinucleotide repeats negatively modulate the promoter activity of Cyr61 and is unstable in hepatocellular carcinoma patients , 2005, Oncogene.