Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge.

Scope for developing an engineered bioremediation strategy for the treatment of hydrocarbon-rich petroleum refinery waste was investigated through biostimulation and bioaugmentation approaches. Enhanced (46-55%) total petroleum hydrocarbon (TPH) attenuation was achieved through phosphate, nitrate or nitrate+phosphate amendment in the sludge with increased (upto 12%) abundance of fermentative, hydrocarbon degrading, sulfate-reducing, CO2-assimilating and methanogenic microorganisms (Bacillus, Coprothermobacter, Rhodobacter, Pseudomonas, Achromobacter, Desulfitobacter, Desulfosporosinus, T78, Methanobacterium, Methanosaeta, etc). Together with nutrients, bioaugmentation with biosurfactant producing and hydrocarbon utilizing indigenous Bacillus strains resulted in 57-75% TPH reduction. Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis revealed enhanced gene allocation for transporters (0.45-3.07%), ABC transporters (0.38-2.07%), methane (0.16-1.06%), fatty acid (0.018-0.15%), nitrogen (0.07-0.17%), butanoate (0.06-0.35%), propanoate (0.004-0.26%) metabolism and some xenobiotics (0.007-0.13%) degradation. This study indicated that nutrient-induced community dynamics of native microorganisms and their metabolic interplay within oil refinery sludge could be a driving force behind accelerated bioremediation.

[1]  M. K. Maiti,et al.  Enrichment and characterization of hydrocarbon-degrading bacteria from petroleum refinery waste as potent bioaugmentation agent for in situ bioremediation. , 2017, Bioresource technology.

[2]  Martin H. Schroth,et al.  Activity and Diversity of Methanogens in a Petroleum Hydrocarbon-Contaminated Aquifer , 2005, Applied and Environmental Microbiology.

[3]  W. Baethgen,et al.  A manual colorimetric procedure for measuring ammonium nitrogen in soil and plant Kjeldahl digests , 1989 .

[4]  A. Alemzadeh,et al.  Bioremediation capability and characterization of bacteria isolated from petroleum contaminated soils in Iran , 2017 .

[5]  Jesse R. Zaneveld,et al.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences , 2013, Nature Biotechnology.

[6]  Y. Ahn,et al.  Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review , 2016, Front. Microbiol..

[7]  X.-m. Xu,et al.  Characterization of a novel biosurfactant produced by marine hydrocarbon‐degrading bacterium Achromobacter sp. HZ01 , 2016, Journal of applied microbiology.

[8]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[9]  R. Naidu,et al.  Remediation trials for hydrocarbon-contaminated soils in arid environments: Evaluation of bioslurry and biopiling techniques , 2015 .

[10]  P. Moore Life in the slow lane , 1995, Nature.

[11]  R. Naidu,et al.  Bioremediation approaches for organic pollutants: a critical perspective. , 2011, Environment international.

[12]  L. Machuca,et al.  Biosurfactant and Degradative Enzymes Mediated Crude Oil Degradation by Bacterium Bacillus subtilis A1 , 2017, Front. Microbiol..

[13]  S. Varjani,et al.  Microbial degradation of petroleum hydrocarbons. , 2017, Bioresource technology.

[14]  V. M. Oliveira,et al.  Diversity analyses of microbial communities in petroleum samples from Brazilian oil fields , 2013 .

[15]  Keita Endo,et al.  Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir. , 2012, Journal of bioscience and bioengineering.

[16]  Xiaoke Hu,et al.  Co-acclimation of bacterial communities under stresses of hydrocarbons with different structures , 2016, Scientific Reports.

[17]  S. Siciliano,et al.  Total Phosphate Influences the Rate of Hydrocarbon Degradation but Phosphate Mineralogy Shapes Microbial Community Composition in Cold-Region Calcareous Soils. , 2016, Environmental science & technology.

[18]  J. P. Riley,et al.  A modified single solution method for the determination of phosphate in natural waters , 1962 .

[19]  R. Colwell,et al.  Microbial degradation of hydrocarbons in the environment. , 1990, Microbiological reviews.

[20]  Jizhong Zhou,et al.  Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments , 2014, The ISME Journal.

[21]  L. Schrader,et al.  Rapid colorimetric determination of nitrate in plant tissue by nitration of salicylic acid , 1975 .

[22]  Dhrubajyoti Chattopadhyay,et al.  Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments , 2017, Scientific Reports.

[23]  I. Banat,et al.  Effect of biosurfactant and fertilizer on biodegradation of crude oil by marine isolates of Bacillus megaterium, Corynebacterium kutscheri and Pseudomonas aeruginosa. , 2011, Bioresource technology.

[24]  J. Nielsen,et al.  Survival and activity of individual bioaugmentation strains. , 2015, Bioresource Technology.

[25]  F. Suja,et al.  Effects of local microbial bioaugmentation and biostimulation on the bioremediation of total petroleum hydrocarbons (TPH) in crude oil contaminated soil based on laboratory and field observations , 2014 .

[26]  R. Reinhardt,et al.  Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation , 2011, Environmental microbiology reports.

[27]  Cindy H. Nakatsu,et al.  Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs , 2013, Nature Communications.

[28]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[29]  R. Bartha,et al.  Effect of environmental parameters on the biodegradation of oil sludge , 1979, Applied and environmental microbiology.

[30]  S. Mukherji,et al.  Characterization of oily sludge from a refinery and biodegradability assessment using various hydrocarbon degrading strains and reconstituted consortia. , 2015, Journal of environmental management.

[31]  Man-li Wu,et al.  Bacterial community shift and hydrocarbon transformation during bioremediation of short-term petroleum-contaminated soil. , 2017, Environmental pollution.

[32]  A. Ghaly,et al.  Effects of Biostimulation and Bioaugmentation on The Degradation of Pyrene in Soil , 2013 .

[33]  Guang-Dong Sun,et al.  Pilot scale ex-situ bioremediation of heavily PAHs-contaminated soil by indigenous microorganisms and bioaugmentation by a PAHs-degrading and bioemulsifier-producing strain. , 2012, Journal of hazardous materials.

[34]  Xiaoli Dong,et al.  Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples , 2015, The ISME Journal.

[35]  I. Head,et al.  Life in the slow lane; biogeochemistry of biodegraded petroleum containing reservoirs and implications for energy recovery and carbon management , 2014, Front. Microbiol..

[36]  A. Walkley,et al.  AN EXAMINATION OF THE DEGTJAREFF METHOD FOR DETERMINING SOIL ORGANIC MATTER, AND A PROPOSED MODIFICATION OF THE CHROMIC ACID TITRATION METHOD , 1934 .

[37]  C. Joshi,et al.  Metabolic potential and taxonomic assessment of bacterial community of an environment to chronic industrial discharge , 2017 .

[38]  J. Caporaso,et al.  From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation , 2015, Applied and Environmental Microbiology.

[39]  Guangming Zeng,et al.  Recent development in the treatment of oily sludge from petroleum industry: a review. , 2013, Journal of hazardous materials.

[40]  D. Le Paslier,et al.  Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene. , 2012, Environmental pollution.

[41]  B. Lal,et al.  Evaluation of Inoculum Addition To Stimulate In Situ Bioremediation of Oily-Sludge-Contaminated Soil , 2001, Applied and Environmental Microbiology.

[42]  Tong Zhang,et al.  Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation , 2016, Biotechnology for Biofuels.

[43]  S. K. Kazy,et al.  Microbial diversity, community composition and metabolic potential in hydrocarbon contaminated oily sludge: prospects for in situ bioremediation , 2014, Environmental Science and Pollution Research.

[44]  Jayeeta Sarkar,et al.  Biostimulation of Indigenous Microbial Community for Bioremediation of Petroleum Refinery Sludge , 2016, Front. Microbiol..

[45]  R M Atlas,et al.  Microbial degradation of petroleum hydrocarbons: an environmental perspective , 1981, Microbiological reviews.

[46]  V. M. de Oliveira,et al.  New Hydrocarbon Degradation Pathways in the Microbial Metagenome from Brazilian Petroleum Reservoirs , 2014, PloS one.

[47]  Bozhong Mu,et al.  Analysis of alkane-dependent methanogenic community derived from production water of a high-temperature petroleum reservoir , 2012, Applied Microbiology and Biotechnology.

[48]  Ajoy K. Roy,et al.  Genome analysis of crude oil degrading Franconibacter pulveris strain DJ34 revealed its genetic basis for hydrocarbon degradation and survival in oil contaminated environment. , 2017, Genomics.

[49]  A. Khardenavis,et al.  Shifts in microbial community in response to dissolved oxygen levels in activated sludge. , 2014, Bioresource technology.

[50]  A. Bordalo,et al.  Potential of the microbial community present in an unimpacted beach sediment to remediate petroleum hydrocarbons , 2013, Environmental Science and Pollution Research.