NeuCode Labels for Relative Protein Quantification *
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Christopher M Rose | Derek J. Bailey | Audrey P Gasch | Derek J Bailey | Joshua J Coon | A. Gasch | M. Westphall | J. Coon | M. MacGilvray | Anna E. Merrill | Alexander S. Hebert | Christopher M. Rose | Alexander S Hebert | Michael S Westphall | Anna E Merrill | Matthew E MacGilvray | Joel C Bradley | William W Wood | Marwan El Masri | Joel C. Bradley | W. Wood | Marwan El Masri
[1] S. Gygi,et al. ms3 eliminates ratio distortion in isobaric multiplexed quantitative , 2011 .
[2] Neutron-Encoded Protein Quantification by Peptide Carbamylation , 2013, Journal of The American Society for Mass Spectrometry.
[3] G. Ammerer,et al. Stress-induced map kinase Hog1 is part of transcription activation complexes. , 2001, Molecular cell.
[4] Andrew H. Thompson,et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. , 2003, Analytical chemistry.
[5] J. Yates,et al. Interference-Free Proteome Quantification with MS/MS-based Isobaric Isotopologue Detection , 2014, Journal of proteome research.
[6] Eulàlia de Nadal,et al. Multilayered control of gene expression by stress‐activated protein kinases , 2010, The EMBO journal.
[7] Audrey P. Gasch,et al. Natural Variation in the Yeast Glucose-Signaling Network Reveals a New Role for the Mig3p Transcription Factor , 2012, G3: Genes | Genomes | Genetics.
[8] M. Bantscheff,et al. High-resolution enabled TMT 8-plexing. , 2012, Analytical chemistry.
[9] Mitchell,et al. Cyclotron motion of two Coulombically interacting ion clouds with implications to Fourier-transform ion cyclotron resonance mass spectrometry. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[10] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[11] M Teige,et al. Rck2, a member of the calmodulin-protein kinase family, links protein synthesis to high osmolarity MAP kinase signaling in budding yeast , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[12] M. Mann,et al. SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function , 2008, Cell.
[13] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[14] Mass defect-based pseudo-isobaric dimethyl labeling for proteome quantification. , 2013, Analytical chemistry.
[15] P. Mortensen,et al. Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy. , 2009, Journal of proteome research.
[16] A. Gasch,et al. Molecular Systems Biology Peer Review Process File a Dynamic Model of Proteome Changes Reveals New Roles for Transcript Alteration in Yeast Transaction Report , 2022 .
[17] Scott A. Busby,et al. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. , 2004, Journal of proteome research.
[18] Derek J. Bailey,et al. Neutron-encoded mass signatures for multi-plexed proteome quantification , 2013, Nature Methods.
[19] L. Pinna,et al. One‐thousand‐and‐one substrates of protein kinase CK2? , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[20] F. Sherman. Getting started with yeast. , 1991, Methods in enzymology.
[21] M. Mann,et al. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.
[22] A. English,et al. Quantitative analysis of the yeast proteome by incorporation of isotopically labeled leucine. , 2002, Journal of proteome research.
[23] J. Boeke,et al. Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR‐mediated gene disruption and other applications , 1998, Yeast.
[24] K. Struhl,et al. The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress. , 2006, Molecular cell.
[25] M. Mann,et al. Super-SILAC mix for quantitative proteomics of human tumor tissue , 2010, Nature Methods.
[26] Reinout Raijmakers,et al. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics , 2009, Nature Protocols.
[27] A. Aranda,et al. Response to acetaldehyde stress in the yeast Saccharomyces cerevisiae involves a strain‐dependent regulation of several ALD genes and is mediatedby the general stress response pathway , 2003, Yeast.
[28] S. Bryant,et al. Open mass spectrometry search algorithm. , 2004, Journal of proteome research.
[29] K. Parker,et al. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.
[30] Ishtiaq Rehman,et al. iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly". , 2009, Journal of proteome research.
[31] James R Broach,et al. Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6 , 2009, Proceedings of the National Academy of Sciences.
[32] Derek J. Bailey,et al. COMPASS: A suite of pre‐ and post‐search proteomics software tools for OMSSA , 2011, Proteomics.
[33] M. Senko,et al. High-performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 Tesla. , 2008, Analytical chemistry.
[34] J. Yates,et al. Large-scale analysis of the yeast proteome by multidimensional protein identification technology , 2001, Nature Biotechnology.
[35] Alla Lapidus,et al. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production , 2011, Proceedings of the National Academy of Sciences.
[36] Derek J. Bailey,et al. Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation* , 2013, Molecular & Cellular Proteomics.
[37] M. Gorshkov,et al. Observation of ion coalescence in Orbitrap Fourier transform mass spectrometry. , 2012, Rapid communications in mass spectrometry : RCM.
[38] Sheng Gu,et al. Amino acid residue specific stable isotope labeling for quantitative proteomics. , 2002, Rapid communications in mass spectrometry : RCM.
[39] S. Gygi,et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.
[40] Hanno Langen,et al. Development of a 5-plex SILAC Method Tuned for the Quantitation of Tyrosine Phosphorylation Dynamics , 2013, Molecular & Cellular Proteomics.
[41] Edward L. Huttlin,et al. Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses. , 2012, Analytical chemistry.
[42] Alexander Makarov,et al. Orbitrap mass spectrometry with resolving powers above 1,000,000 , 2012 .
[43] J. Thevelein,et al. The Transcriptional Response of Saccharomyces cerevisiae to Osmotic Shock , 2000, The Journal of Biological Chemistry.
[44] Igor Jurisica,et al. Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes , 2022 .
[45] J. Thorner,et al. Yeast α factor is processed from a larger precursor polypeptide: The essential role of a membrane-bound dipeptidyl aminopeptidase , 1983, Cell.
[46] Derek J. Bailey,et al. The One Hour Yeast Proteome* , 2013, Molecular & Cellular Proteomics.
[47] M. Senko,et al. Novel parallelized quadrupole/linear ion trap/Orbitrap tribrid mass spectrometer improving proteome coverage and peptide identification rates. , 2013, Analytical chemistry.
[48] L. Sleno,et al. The use of mass defect in modern mass spectrometry. , 2012, Journal of mass spectrometry : JMS.
[49] Angus I. Lamond,et al. A perspective on proteomics in cell biology , 2014, Trends in cell biology.
[50] A. Heck,et al. Next-generation proteomics: towards an integrative view of proteome dynamics , 2012, Nature Reviews Genetics.
[51] P. Sunnerhagen,et al. Yeast mRNA cap-binding protein Cbc1/Sto1 is necessary for the rapid reprogramming of translation after hyperosmotic shock , 2012, Molecular biology of the cell.
[52] M. Mann,et al. Large-scale phosphosite quantification in tissues by a spike-in SILAC method , 2011, Nature Methods.