Almost all industrial products are assembled from multiple parts, and this is true for all sizes of products. As an example, a nuclear facility is a large structure consisting of more than 10 million components. This paper discusses a method to analyze an assembly by gathering data on its component parts. Gathered data on component may identify ill conditioned meshes for connecting surfaces between components. These ill meshes are typified by nodal point disagreement in finite element discretization. A technique to resolve inconsistencies in data among the components is developed. By using this technique, structural analysis for an assembly can be carried out, and results can be obtained by the use of supercomputers, such as the K computer. Numerical results are discussed for components of the High Temperature Engineering Test Reactor of the Japan Atomic Energy Agency.© 2014 ASME