Ordinal Pattern: A New Descriptor for Brain Connectivity Networks

Brain connectivity networks based on magnetic resonance imaging (MRI) or functional MRI (fMRI) data provide a straightforward way to quantify the structural or functional systems of the brain. Currently, there are several network descriptors developed for representing and analyzing brain connectivity networks. However, most of them are designed for unweighted networks, regardless of the valuable weight information of edges, or do not take advantage of the ordinal relationship of weighted edges (even though they are designed for weighted networks). In this paper, we propose a new network descriptor (i.e., ordinal pattern that contains a sequence of weighted edges) for brain connectivity network analysis. Compared with previous network properties, the proposed ordinal patterns cannot only take advantage of the weight information of edges but also explicitly model the ordinal relationship of weighted edges in brain connectivity networks. We further develop an ordinal pattern-based learning framework for brain disease diagnosis using resting-state fMRI data. Specifically, we first construct a set of brain functional connectivity networks, where each network is corresponding to a particular subject. We then develop an algorithm to identify ordinal patterns that frequently appear in brain connectivity networks of patients and normal controls. We further perform discriminative ordinal pattern selection and extract feature representations for subjects based on the selected ordinal patterns, followed by a learning model for automated brain disease diagnosis. Experimental results on both Alzheimer’s Disease Neuroimaging Initiative and attention deficit hyperactivity disorder-200 data sets demonstrate that our method outperforms the several state-of-the-art approaches in the tasks of disease classification and clinical score regression.

[1]  Edward Challis,et al.  Gaussian process classification of Alzheimer's disease and mild cognitive impairment from resting-state fMRI , 2015, NeuroImage.

[2]  Richard F. Betzel,et al.  Resting-brain functional connectivity predicted by analytic measures of network communication , 2013, Proceedings of the National Academy of Sciences.

[3]  Wenbin Li,et al.  Enriched white matter connectivity networks for accurate identification of MCI patients , 2011, NeuroImage.

[4]  Robert E. Tarjan,et al.  Depth-First Search and Linear Graph Algorithms , 1972, SIAM J. Comput..

[5]  Nikos Makris,et al.  Understanding Alterations in Brain Connectivity in Attention-Deficit/Hyperactivity Disorder Using Imaging Connectomics , 2014, Biological Psychiatry.

[6]  Richard F. Betzel,et al.  Cooperative and Competitive Spreading Dynamics on the Human Connectome , 2015, Neuron.

[7]  Daoqiang Zhang,et al.  Ordinal Patterns for Connectivity Networks in Brain Disease Diagnosis , 2016, MICCAI.

[8]  N. Giri Multivariate Statistical Analysis : Revised And Expanded , 2003 .

[9]  Jiawei Han,et al.  gSpan: graph-based substructure pattern mining , 2002, 2002 IEEE International Conference on Data Mining, 2002. Proceedings..

[10]  Jie Tian,et al.  Altered topological patterns of brain networks in mild cognitive impairment and Alzheimer's disease: A resting-state fMRI study , 2012, Psychiatry Research: Neuroimaging.

[11]  Archana Venkataraman,et al.  Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. , 2010, Journal of neurophysiology.

[12]  Daniele Durante,et al.  Unifying inference on brain network variations in neurological diseases: The Alzheimer's case , 2015, 1510.05391.

[13]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[14]  Yaozong Gao,et al.  Landmark-Based Alzheimer's Disease Diagnosis Using Longitudinal Structural MR Images , 2016, MCV/BAMBI@MICCAI.

[15]  Daniel Rueckert,et al.  Identifying population differences in whole-brain structural networks: A machine learning approach , 2010, NeuroImage.

[16]  Hengqing Tong,et al.  Multivariate Statistical Analysis and Data Analysis , 2011 .

[17]  Philip S. Yu,et al.  Mining significant graph patterns by leap search , 2008, SIGMOD Conference.

[18]  Daoqiang Zhang,et al.  Topological graph kernel on multiple thresholded functional connectivity networks for mild cognitive impairment classification , 2014, Human brain mapping.

[19]  Daniel L. Rubin,et al.  Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease , 2008, PLoS Comput. Biol..

[20]  Liang Wang,et al.  Altered small‐world brain functional networks in children with attention‐deficit/hyperactivity disorder , 2009, Human brain mapping.

[21]  Dimitris Samaras,et al.  Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example , 2016, NeuroImage.

[22]  Christos Davatzikos,et al.  Optimally-Discriminative Voxel-Based Morphometry significantly increases the ability to detect group differences in schizophrenia, mild cognitive impairment, and Alzheimer's disease , 2013, NeuroImage.

[23]  Kerstin Konrad,et al.  Is the ADHD brain wired differently? A review on structural and functional connectivity in attention deficit hyperactivity disorder , 2010, Human brain mapping.

[24]  Mubarak Shah,et al.  ADHD classification using bag of words approach on network features , 2012, Medical Imaging.

[25]  Zhijun Zhang,et al.  Abnormal whole-brain functional connection in amnestic mild cognitive impairment patients , 2011, Behavioural Brain Research.

[26]  Daoqiang Zhang,et al.  Frequent and Discriminative Subnetwork Mining for Mild Cognitive Impairment Classification , 2014, Brain Connect..

[27]  G. Alexander,et al.  Longitudinal PET Evaluation of Cerebral Metabolic Decline in Dementia: A Potential Outcome Measure in Alzheimer's Disease Treatment Studies. , 2002, The American journal of psychiatry.

[28]  Dinggang Shen,et al.  View‐aligned hypergraph learning for Alzheimer's disease diagnosis with incomplete multi‐modality data , 2017, Medical Image Anal..

[29]  Dinggang Shen,et al.  Landmark‐based deep multi‐instance learning for brain disease diagnosis , 2018, Medical Image Anal..

[30]  E. DeLong,et al.  Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. , 1988, Biometrics.

[31]  Jie Tian,et al.  FMRI connectivity analysis of acupuncture effects on the whole brain network in mild cognitive impairment patients. , 2012, Magnetic resonance imaging.

[32]  Karl J. Friston,et al.  Functional Connectivity: The Principal-Component Analysis of Large (PET) Data Sets , 1993, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[33]  G. Frisoni,et al.  Detection of grey matter loss in mild Alzheimer's disease with voxel based morphometry , 2002, Journal of neurology, neurosurgery, and psychiatry.

[34]  Olivier Salvado,et al.  Statistical machine learning to identify traumatic brain injury (TBI) from structural disconnections of white matter networks , 2016, NeuroImage.

[35]  A. Fagan,et al.  Functional connectivity and graph theory in preclinical Alzheimer's disease , 2014, Neurobiology of Aging.

[36]  A. R. Rao,et al.  Attributed graph distance measure for automatic detection of attention deficit hyperactive disordered subjects , 2014, Front. Neural Circuits.

[37]  Edward T. Bullmore,et al.  Fundamentals of Brain Network Analysis , 2016 .

[38]  Daoqiang Zhang,et al.  Hyper-connectivity of functional networks for brain disease diagnosis , 2016, Medical Image Anal..

[39]  Nick C Fox,et al.  The Alzheimer's disease neuroimaging initiative (ADNI): MRI methods , 2008, Journal of magnetic resonance imaging : JMRI.

[40]  Efstathios D. Gennatas,et al.  Divergent network connectivity changes in behavioural variant frontotemporal dementia and Alzheimer's disease. , 2010, Brain : a journal of neurology.

[41]  Tianzi Jiang,et al.  Enhanced resting-state brain activities in ADHD patients: A fMRI study , 2008, Brain and Development.

[42]  Yun Jiao,et al.  Altered regional homogeneity patterns in adults with attention-deficit hyperactivity disorder. , 2013, European journal of radiology.

[43]  Paul Aljabar,et al.  Characterising brain network topologies: A dynamic analysis approach using heat kernels , 2016, NeuroImage.

[44]  S. Rombouts,et al.  Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity , 2010, PloS one.

[45]  Tongsheng Zhang,et al.  Extreme Learning Machine-Based Classification of ADHD Using Brain Structural MRI Data , 2013, PloS one.

[46]  R Casanova,et al.  Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex , 2012, The open neuroimaging journal.

[47]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[48]  Cornelis J. Stam,et al.  Disrupted modular brain dynamics reflect cognitive dysfunction in Alzheimer's disease , 2012, NeuroImage.

[49]  Olaf Sporns,et al.  From simple graphs to the connectome: Networks in neuroimaging , 2012, NeuroImage.

[50]  Daoqiang Zhang,et al.  Integration of Network Topological and Connectivity Properties for Neuroimaging Classification , 2014, IEEE Transactions on Biomedical Engineering.

[51]  M K Habib,et al.  Dynamics of neuronal firing correlation: modulation of "effective connectivity". , 1989, Journal of neurophysiology.

[52]  Hong Cheng,et al.  Graph classification: a diversified discriminative feature selection approach , 2012, CIKM.

[53]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[54]  Zhi-jun Zhang,et al.  Modular reorganization of brain resting state networks and its independent validation in Alzheimer's disease patients , 2013, Front. Hum. Neurosci..