Sequence of the Tomato Chloroplast DNA and Evolutionary Comparison of Solanaceous Plastid Genomes

[1]  M. Tillich,et al.  Editing of plastid RNA in Arabidopsis thaliana ecotypes. , 2005, The Plant journal : for cell and molecular biology.

[2]  D. Janzen,et al.  Use of DNA barcodes to identify flowering plants. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[3]  E. Babiychuk,et al.  Pigment Deficiency in Nightshade/Tobacco Cybrids Is Caused by the Failure to Edit the Plastid ATPase α-Subunit mRNAw⃞ , 2005, The Plant Cell Online.

[4]  James M. Pflug,et al.  Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. , 2004, Molecular phylogenetics and evolution.

[5]  Tsuyoshi Endo,et al.  Cyclic electron flow around photosystem I is essential for photosynthesis , 2004, Nature.

[6]  W. Martin,et al.  Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes , 2004, Nature Reviews Genetics.

[7]  M. Sugiura,et al.  Updated Gene Map of Tobacco Chloroplast DNA , 1998, Plant Molecular Biology Reporter.

[8]  J. Suzuki,et al.  Occurrence of silent RNA editing in chloroplasts: its species specificity and the influence of environmental and developmental conditions , 1996, Plant Molecular Biology.

[9]  H. Kössel,et al.  Editing of the chloroplast ndhB encoded transcript shows divergence between closely related members of the grass family (Poaceae) , 1995, Plant Molecular Biology.

[10]  J. Gray,et al.  Nucleotide sequence of a wheat chloroplast gene encoding the proteolytic subunit of an ATP-dependent protease , 1990, Plant Molecular Biology.

[11]  A. Phillips.  Restriction map and clone bank of tomato plastid DNA , 1985, Current Genetics.

[12]  R. Bock,et al.  Extranuclear Inheritance: Chloroplast Proteomics , 2004 .

[13]  R. Bock,et al.  Rapid evolution of RNA editing sites in a small non-essential plastid gene. , 2004, Nucleic acids research.

[14]  M. Sugiura,et al.  The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing , 2004, Photosynthesis Research.

[15]  M. Sugiura,et al.  Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. , 2003, Molecular biology and evolution.

[16]  Koichi Yoshinaga,et al.  RNA editing in hornwort chloroplasts makes more than half the genes functional. , 2003, Nucleic acids research.

[17]  Sabine Cornelsen,et al.  Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[18]  R. Herrmann,et al.  The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. , 2002, Molecular biology and evolution.

[19]  M. Sugiura,et al.  Comparative Analysis of RNA Editing Sites in Higher Plant Chloroplasts , 2001, Journal of Molecular Evolution.

[20]  R. Herrmann,et al.  Heterologous, splicing‐dependent RNA editing in chloroplasts: allotetraploidy provides trans‐factors , 2001, The EMBO journal.

[21]  R. Herrmann,et al.  The Chloroplast Gene ycf9 Encodes a Photosystem II (PSII) Core Subunit, PsbZ, That Participates in PSII Supramolecular Architecture , 2001, The Plant Cell Online.

[22]  G. Peltier,et al.  Increased sensitivity of photosynthesis to antimycin A induced by inactivation of the chloroplast ndhB gene. Evidence for a participation of the NADH-dehydrogenase complex to cyclic electron flow around photosystem I. , 2001, Plant physiology.

[23]  W. Martin,et al.  How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies. , 2001, Trends in genetics : TIG.

[24]  R. Bock.  RNA editing in plant mitochondria and chloroplasts. , 2001 .

[25]  R. Bock.  Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing. , 2000, Biochimie.

[26]  R. Bock,et al.  A Small Chloroplast-Encoded Protein as a Novel Architectural Component of the Light-Harvesting Antenna , 2000, The Journal of cell biology.

[27]  R. Bock,et al.  The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes. , 2000, The Plant journal : for cell and molecular biology.

[28]  D. Leister,et al.  A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis. , 2000, Trends in plant science.

[29]  S. Knapp,et al.  Solanaceae IV: advances in biology and utilization , 2000 .

[30]  W. Majeran,et al.  Evidence for a Role of ClpP in the Degradation of the Chloroplast Cytochrome b6f Complex , 2000, Plant Cell.

[31]  R. Bock,et al.  Targeted inactivation of the smallest plastid genome‐encoded open reading frame reveals a novel and essential subunit of the cytochrome b6f complex , 1999, The EMBO journal.

[32]  T. Hirose,et al.  RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity , 1999, Molecular and General Genetics MGG.

[33]  W. Martin,et al.  Why have organelles retained genomes? , 1999, Trends in genetics : TIG.

[34]  J. Kudla,et al.  RNA editing in an untranslated region of the Ginkgo chloroplast genome. , 1999, Gene.

[35]  W. Hess,et al.  Organellar RNA polymerases of higher plants. , 1999, International review of cytology.

[36]  L. Bohs,et al.  Phylogeny and provisional classification of the Solanaceae based on chloroplast DNA , 1999 .

[37]  R. Herrmann,et al.  Gene transfer from organelles to the nucleus: how much, what happens, and Why? , 1998, Plant physiology.

[38]  Yasuyuki Yamada,et al.  Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[39]  P. Nixon,et al.  Identification of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes , 1998, The EMBO journal.

[40]  Z. Xie,et al.  Genetic analysis of chloroplast c-type cytochrome assembly in Chlamydomonas reinhardtii: One chloroplast locus and at least four nuclear loci are required for heme attachment. , 1998, Genetics.

[41]  M. Sugiura,et al.  Targeted deletion of sprA from the tobacco plastid genome indicates that the encoded small RNA is not essential for pre-16S rRNA maturation in plastids , 1997, Molecular and General Genetics MGG.

[42]  J. Rochaix,et al.  Disruption of the plastid ycf10 open reading frame affects uptake of inorganic carbon in the chloroplast of Chlamydomonas , 1997, The EMBO journal.

[43]  J. Rochaix,et al.  The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex , 1997, The EMBO journal.

[44]  R. Bock,et al.  Targeted Inactivation of a Tobacco Intron–containing Open Reading Frame Reveals a Novel Chloroplast-encoded Photosystem I–related Gene , 1997, The Journal of cell biology.

[45]  T. Börner,et al.  Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. , 1997, Science.

[46]  P. Maliga,et al.  The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids , 1997, The EMBO journal.

[47]  H. Kössel,et al.  Occurrence of plastid RNA editing in all major lineages of land plants. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[48]  A. Barkan,et al.  Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors. , 1997, The Plant cell.

[49]  T Tsudzuki,et al.  Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[50]  S. Merchant,et al.  The Plastid-encoded ccsA Gene Is Required for Heme Attachment to Chloroplast c-type Cytochromes (*) , 1996, The Journal of Biological Chemistry.

[51]  J. Shanklin,et al.  The stroma of higher plant plastids contain ClpP and ClpC, functional homologs of Escherichia coli ClpP and ClpA: an archetypal two-component ATP-dependent protease. , 1995, The Plant cell.

[52]  G. Igloi,et al.  Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. , 1995, Journal of molecular biology.

[53]  T. Konishi,et al.  The Compartmentation of Acetyl-Coenzyme A Carboxylase in Plants , 1995, Plant physiology.

[54]  G. Link,et al.  RNA-binding activity of the matK protein encoded by the chloroplast trnK intron from mustard (Sinapis alba L.). , 1995, Nucleic acids research.

[55]  R. Bock,et al.  Introduction of a heterologous editing site into the tobacco plastid genome: the lack of RNA editing leads to a mutant phenotype. , 1994, The EMBO journal.

[56]  T. Hübschmann,et al.  Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids. , 1994, The Plant cell.

[57]  G. Igloi,et al.  The role of RNA editing in conservation of start codons in chloroplast genomes. , 1994, Gene.

[58]  M. Sugiura,et al.  A novel RNA gene in the tobacco plastid genome: its possible role in the maturation of 16S rRNA. , 1994, The EMBO journal.

[59]  I. Furusawa,et al.  Chloroplast-encoded protein as a subunit of acetyl-CoA carboxylase in pea plant. , 1993, The Journal of biological chemistry.

[60]  G. Mohr,et al.  Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function. , 1993, Nucleic acids research.

[61]  R. Matsuno,et al.  Chloroplast envelope protein encoded by chloroplast genome , 1993, FEBS letters.

[62]  H. Kössel,et al.  Identification of editing positions in the ndhB transcript from maize chloroplasts reveals sequence similarities between editing sites of chloroplasts and plant mitochondria. , 1992, Nucleic acids research.

[63]  P. Chatellard,et al.  Mapping and sequencing of an actively transcribedEuglena gracilis chloroplast gene (ccsA) homologous to theArabidopsis thaliana nuclear genecs(ch‐42) , 1992, FEBS letters.

[64]  H. Kössel,et al.  Internal editing of the maize chloroplast ndhA transcript restores codons for conserved amino acids. , 1992, The Plant cell.

[65]  J. Kudla,et al.  RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the initiation codon. , 1992, The EMBO journal.

[66]  M. Sugiura,et al.  The chloroplast genome. , 1992, Plant molecular biology.

[67]  G. Igloi,et al.  Editing of a chloroplast mRNA by creation of an initiation codon , 1991, Nature.

[68]  M. Sugiura,et al.  Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. , 1991, Nucleic acids research.

[69]  S. Gottesman,et al.  Clp P represents a unique family of serine proteases. , 1990, The Journal of biological chemistry.

[70]  M. Sugiura,et al.  The chloroplast chromosomes in land plants. , 1989, Annual review of cell biology.

[71]  Wen-Hsiung Li,et al.  Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[72]  F. Takaiwa,et al.  The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression , 1986, The EMBO journal.