Gramene 2013: comparative plant genomics resources
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Dan M. Bolser | Lincoln Stein | Guanming Wu | Robin Haw | Paul J. Kersey | James Thomason | Justin Preece | Pankaj Jaiswal | Doreen Ware | Sushma Naithani | Zhenyuan Lu | Peter D'Eustachio | Yinping Jiao | Ken Youens-Clark | Marcela K. Monaco | Joshua C. Stein | Sharon Wei | Palitha Dharmawardhana | Sunita Kumari | Vindhya Amarasinghe | Shiran Pasternak | Andrew Olson | Arnaud Kerhornou | Daniel M. Staines | Brandon Walts | David Croft | L. Stein | P. D’Eustachio | R. Haw | S. Pasternak | P. Kersey | Guanming Wu | J. Stein | D. Ware | Brandon Walts | Justin Preece | P. Jaiswal | D. Bolser | D. Staines | P. Dharmawardhana | S. Naithani | Vindhya Amarasinghe | David Croft | Sharon Wei | Sunita Kumari | A. Kerhornou | Yinping Jiao | Jim Thomason | Zhenyuan Lu | Andrew Olson | K. Youens-Clark | Sushma Naithani
[1] P. Karp,et al. Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants1[W][OA] , 2010, Plant Physiology.
[2] Bjarni J. Vilhjálmsson,et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines , 2010 .
[3] Laurent Gil,et al. Ensembl 2013 , 2012, Nucleic Acids Res..
[4] Meimei Xu,et al. Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products. , 2004, The Plant journal : for cell and molecular biology.
[5] William Spooner,et al. GrameneMart: the BioMart data portal for the Gramene project , 2012, Database J. Biol. Databases Curation.
[6] Justin Preece,et al. Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae)1 , 2013, Applications in plant sciences.
[7] Edward S. Buckler,et al. Gramene database in 2010: updates and extensions , 2010, Nucleic Acids Res..
[8] Mihaela M. Martis,et al. A physical, genetic and functional sequence assembly of the barley genome , 2012, Nature.
[9] Svetlana Gerdes,et al. Plant B vitamin pathways and their compartmentation: a guide for the perplexed. , 2012, Journal of experimental botany.
[10] Ioannis Xenarios,et al. MethodSubstantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays , 2010 .
[11] Aedín C. Culhane,et al. Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments , 2011, Nucleic Acids Res..
[12] Xun Xu,et al. Comparative population genomics of maize domestication and improvement , 2012, Nature Genetics.
[13] Arnab Roy,et al. Functional characterization of the rice kaurene synthase-like gene family. , 2007, Phytochemistry.
[14] Arek Kasprzyk,et al. BioMart: driving a paradigm change in biological data management , 2011, Database J. Biol. Databases Curation.
[15] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[16] Pankaj Jaiswal,et al. Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules , 2011, PloS one.
[17] Qian Qian,et al. Proteomic analysis of a disease-resistance-enhanced lesion mimic mutant spotted leaf 5 in rice , 2013, Rice.
[18] H. Dooner,et al. Give-and-take: interactions between DNA transposons and their host plant genomes. , 2007, Current opinion in genetics & development.
[19] Albert J. Vilella,et al. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. , 2009, Genome research.
[20] Lincoln Stein,et al. Reactome: a database of reactions, pathways and biological processes , 2010, Nucleic Acids Res..
[21] Richard M. Clark,et al. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.
[22] Michele Morgante,et al. Transposable elements and the plant pan-genomes. , 2007, Current opinion in plant biology.
[23] C. Soderlund,et al. The Oryza Map Alignment Project: The Golden Path to Unlocking the Genetic Potential of Wild Rice Species , 2005, Plant Molecular Biology.
[24] David Croft,et al. Building models using Reactome pathways as templates. , 2013, Methods in molecular biology.
[25] Syed Haider,et al. Ensembl BioMarts: a hub for data retrieval across taxonomic space , 2011, Database J. Biol. Databases Curation.
[26] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[27] Peter J. Bradbury,et al. Maize HapMap2 identifies extant variation from a genome in flux , 2012, Nature Genetics.
[28] Laurent Gil,et al. Ensembl variation resources , 2010, BMC Genomics.
[29] Peter D. Karp,et al. Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology , 2015, Briefings Bioinform..
[30] Reuben J. Peters,et al. Identification of Syn-Pimara-7,15-Diene Synthase Reveals Functional Clustering of Terpene Synthases Involved in Rice Phytoalexin/Allelochemical Biosynthesis1 , 2004, Plant Physiology.
[31] Ethalinda K. S. Cannon,et al. Maize Metabolic Network Construction and Transcriptome Analysis , 2013 .
[32] Dean Ravenscroft,et al. A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress , 2013, Rice.
[33] Robert J. Elshire,et al. A First-Generation Haplotype Map of Maize , 2009, Science.
[34] Gautier Koscielny,et al. Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species , 2011, Nucleic Acids Res..
[35] S. Ramachandran,et al. Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor) , 2011, Genome Biology.
[36] Edward S. Buckler,et al. Genetic structure and domestication history of the grape , 2011, Proceedings of the National Academy of Sciences.
[37] Vipin T. Sreedharan,et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana , 2011, Nature.
[38] Kazunori Okada,et al. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones* , 2007, Journal of Biological Chemistry.
[39] R. Durbin,et al. The Sequence Ontology: a tool for the unification of genome annotations , 2005, Genome Biology.
[40] Jian Wang,et al. Genome-wide patterns of genetic variation among elite maize inbred lines , 2010, Nature Genetics.
[41] Damian Smedley,et al. BioMart Central Portal: an open database network for the biological community , 2011, Database J. Biol. Databases Curation.
[42] Kenneth L. McNally,et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice , 2009, Proceedings of the National Academy of Sciences.
[43] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[44] Jian Wang,et al. BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics , 2004, Nucleic Acids Res..