NONCODE 2016: an informative and valuable data source of long non-coding RNAs
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Wei Wu | Hui Li | Yi Zhao | Michael Q. Zhang | Ninghui Sun | Ziyang Li | Runsheng Chen | Yue Kang | Dechao Bu | Yajing Hao | Shuangsang Fang | Ninghui Sun | Hui Li | Wei Wu | Yi Zhao | Runsheng Chen | Dechao Bu | Ziyang Li | Yajing Hao | Shuangsang Fang | Yue-hu Kang
[1] Sanghyuk Lee,et al. lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs , 2014, Bioinform..
[2] Yi Zhao,et al. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts , 2013, Nucleic acids research.
[3] Howard Y. Chang,et al. Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis , 2010, Nature.
[4] Jie Wang,et al. antiCODE: a natural sense-antisense transcripts database , 2007, BMC Bioinformatics.
[5] Alessandro Vullo,et al. Ensembl 2015 , 2014, Nucleic Acids Res..
[6] J. Harrow,et al. Assessment of transcript reconstruction methods for RNA-seq , 2013, Nature Methods.
[7] D. Haussler,et al. Human-mouse alignments with BLASTZ. , 2003, Genome research.
[8] Melissa J. Landrum,et al. RefSeq: an update on mammalian reference sequences , 2013, Nucleic Acids Res..
[9] S. Dhanasekaran,et al. The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.
[10] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[11] Donald Sharon,et al. A single-molecule long-read survey of the human transcriptome , 2013, Nature Biotechnology.
[12] Howard Y. Chang,et al. Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.
[13] S. Bergmann,et al. The evolution of gene expression levels in mammalian organs , 2011, Nature.
[14] Nadav S. Bar,et al. Landscape of transcription in human cells , 2012, Nature.
[15] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[16] R. Bone. Discovery , 1938, Nature.
[17] An-Yuan Guo,et al. lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse , 2014, Nucleic Acids Res..
[18] Howard Y. Chang,et al. Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes , 2010, Science.
[19] Lan Chen,et al. NPInter: the noncoding RNAs and protein related biomacromolecules interaction database , 2005, Nucleic Acids Res..
[20] Peggy Hall,et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations , 2013, Nucleic Acids Res..
[21] Yi Zhao,et al. NONCODE: an integrated knowledge database of non-coding RNAs , 2004, Nucleic Acids Res..
[22] Tao Liu,et al. NONCODE v2.0: decoding the non-coding , 2007, Nucleic Acids Res..
[23] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[24] Wei Wu,et al. NPInter v2.0: an updated database of ncRNA interactions , 2013, Nucleic Acids Res..
[25] Jun Yu,et al. LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs , 2014, Nucleic Acids Res..
[26] David G. Knowles,et al. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.
[27] Xiaoke Ma,et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks , 2012, Nucleic acids research.
[28] Marcel E. Dinger,et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs , 2014, Nucleic Acids Res..
[29] Yi Zhao,et al. Evolutionary annotation of conserved long non-coding RNAs in major mammalian species , 2015, Science China Life Sciences.
[30] J. Vandesompele,et al. An update on LNCipedia: a database for annotated human lncRNA sequences , 2015, Nucleic Acids Res..
[31] C. Ponting,et al. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. , 2007, Genome research.
[32] Frank Grützner,et al. The evolution of lncRNA repertoires and expression patterns in tetrapods , 2014, Nature.
[33] Mary Goldman,et al. The UCSC Genome Browser database: extensions and updates 2011 , 2011, Nucleic Acids Res..
[34] C. Ponting,et al. Evolution and Functions of Long Noncoding RNAs , 2009, Cell.
[35] Qizhi Yao,et al. Expression and Function of a Large Non-coding RNA Gene XIST in Human Cancer , 2011, World Journal of Surgery.
[36] C. Ponting,et al. Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness , 2009, Genome Biology.
[37] Elizabeth Pennisi,et al. Shining a light on the genome's 'dark matter'. , 2010, Science.
[38] Wei Wu,et al. NONCODEv4: exploring the world of long non-coding RNA genes , 2013, Nucleic Acids Res..
[39] Howard Y. Chang,et al. Molecular mechanisms of long noncoding RNAs. , 2011, Molecular cell.
[40] C. Burge,et al. Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues , 2012, Science.
[41] D. Bartel,et al. lincRNAs: Genomics, Evolution, and Mechanisms , 2013, Cell.
[42] Shuli Kang,et al. Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network , 2011, Nucleic acids research.
[43] Hui Xiao,et al. NONCODE v3.0: integrative annotation of long noncoding RNAs , 2011, Nucleic Acids Res..
[44] J. Rinn,et al. lincRNAs act in the circuitry controlling pluripotency and differentiation , 2011, Nature.
[45] Yi Zhao,et al. Clustered microRNAs' coordination in regulating protein-protein interaction network , 2009, BMC Systems Biology.
[46] Changning Liu,et al. ncFANs: a web server for functional annotation of long non-coding RNAs , 2011, Nucleic Acids Res..