Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

[1]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[2]  M. Firestone,et al.  Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses , 2013, The ISME Journal.

[3]  Donald R Schoolmaster,et al.  Mapping the niche space of soil microorganisms using taxonomy and traits. , 2012, Ecology.

[4]  Eoin L. Brodie,et al.  Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups , 2012, Proceedings of the National Academy of Sciences.

[5]  N. Fierer,et al.  Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes , 2012 .

[6]  H. Setälä,et al.  Land use alters the resistance and resilience of soil food webs to drought , 2012 .

[7]  R. Vargas,et al.  Precipitation variability and fire influence the temporal dynamics of soil CO2 efflux in an arid grassland , 2012 .

[8]  Radhey S. Gupta,et al.  Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria , 2012, Microbiology and Molecular Reviews.

[9]  Rob Knight,et al.  Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients , 2011, The ISME Journal.

[10]  J. Schimel,et al.  Soil nitrogen availability and transformations differ between the summer and the growing season in a California grassland , 2011 .

[11]  Yiqi Luo,et al.  Effect of warming and drought on grassland microbial communities , 2011, The ISME Journal.

[12]  W. Wieder,et al.  Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest , 2010 .

[13]  Robert C. Edgar,et al.  Search and clustering orders of magnitude faster than BLAST , 2010, Bioinform..

[14]  W. Whitman,et al.  The ecological coherence of high bacterial taxonomic ranks , 2010, Nature Reviews Microbiology.

[15]  J. Lennon,et al.  Dormancy contributes to the maintenance of microbial diversity , 2010, Proceedings of the National Academy of Sciences.

[16]  R. Knight,et al.  Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data , 2009, The ISME Journal.

[17]  K. Nelson,et al.  Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces. , 2009, Water research.

[18]  Franco Miglietta,et al.  Precipitation pulses enhance respiration of Mediterranean ecosystems: the balance between organic and inorganic components of increased soil CO2 efflux , 2009 .

[19]  Adam P. Arkin,et al.  FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.

[20]  W. Borken,et al.  Reappraisal of drying and wetting effects on C and N mineralization and fluxes in soils , 2009 .

[21]  Eoin L. Brodie,et al.  Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland , 2009, The ISME Journal.

[22]  N. Swenson Phylogenetic Resolution and Quantifying the Phylogenetic Diversity and Dispersion of Communities , 2009, PloS one.

[23]  Bernard Henrissat,et al.  Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils , 2009, Applied and Environmental Microbiology.

[24]  Scott T. Bates,et al.  A culture-independent study of free-living fungi in biological soil crusts of the Colorado Plateau: their diversity and relative contribution to microbial biomass. , 2009, Environmental microbiology.

[25]  J. Zak,et al.  Soil Microbial Community Response to Drought and Precipitation Variability in the Chihuahuan Desert , 2009, Microbial Ecology.

[26]  P. Haygarth,et al.  Drying and rewetting effects on soil microbial community composition and nutrient leaching , 2008 .

[27]  Franco Miglietta,et al.  Drying and wetting of Mediterranean soils stimulates decomposition and carbon dioxide emission: the "Birch effect". , 2007, Tree physiology.

[28]  L. Halverson,et al.  Alginate Production by Pseudomonas putida Creates a Hydrated Microenvironment and Contributes to Biofilm Architecture and Stress Tolerance under Water-Limiting Conditions , 2007, Journal of bacteriology.

[29]  T. Balser,et al.  Microbial stress-response physiology and its implications for ecosystem function. , 2007, Ecology.

[30]  R. B. Jackson,et al.  Toward an ecological classification of soil bacteria. , 2007, Ecology.

[31]  G. M. Zenova,et al.  Actinomycete growth in conditions of low moisture , 2007, Biology Bulletin.

[32]  J. Palutikof,et al.  Climate change 2007: Impacts, Adaptation and Vulnerability. Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Summary for Policymakers. , 2007 .

[33]  T. Wilbanks,et al.  Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change , 2007 .

[34]  M. Firestone,et al.  Response of Microbial Community Composition and Function to Soil Climate Change , 2006, Microbial Ecology.

[35]  M. Firestone,et al.  Seasonal Dynamics of Microbial Community Composition and Function in Oak Canopy and Open Grassland Soils , 2006, Microbial Ecology.

[36]  Philip Hugenholtz,et al.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes , 2006, Nucleic Acids Res..

[37]  Lynne Boddy,et al.  Living in a fungal world: impact of fungi on soil bacterial niche development. , 2005, FEMS microbiology reviews.

[38]  R. B. Jackson,et al.  Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays , 2005, Applied and Environmental Microbiology.

[39]  R. Conrad,et al.  Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. , 2005, Environmental microbiology.

[40]  B. Jørgensen,et al.  Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria , 2005, Nature.

[41]  H. Birch The effect of soil drying on humus decomposition and nitrogen availability , 1958, Plant and Soil.

[42]  Jianwu Tang,et al.  How soil moisture, rain pulses, and growth alter the response of ecosystem respiration to temperature , 2004 .

[43]  A. Steinbüchel,et al.  Physiological and morphological responses of the soil bacterium Rhodococcus opacus strain PD630 to water stress. , 2004, FEMS microbiology ecology.

[44]  U. Langer,et al.  Classification of soil microorganisms based on growth properties: a critical view of some commonly used terms , 2004 .

[45]  Jürgen Eck,et al.  Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics , 2003, Molecular microbiology.

[46]  J. Wan,et al.  Moisture Characteristics of Hanford Gravels: Bulk, Grain‐Surface, and Intragranular Components , 2003 .

[47]  J. Wan,et al.  Moisture characteristics of Hanford gravels: Bulk, grain-surface, and intragranular components , 2003 .

[48]  N. Fierer,et al.  A Proposed Mechanism for the Pulse in Carbon Dioxide Production Commonly Observed Following the Rapid Rewetting of a Dry Soil , 2003 .

[49]  Campbell O. Webb,et al.  Phylogenies and Community Ecology , 2002 .

[50]  Eoin L. Brodie,et al.  Bacterial Community Dynamics across a Floristic Gradient in a Temperate Upland Grassland Ecosystem , 2002, Microbial Ecology.

[51]  J. Palutikof,et al.  Climate change 2007 : impacts, adaptation and vulnerability , 2001 .

[52]  Marti J. Anderson,et al.  A new method for non-parametric multivariate analysis of variance in ecology , 2001 .

[53]  R. Griffiths,et al.  Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition , 2000, Applied and Environmental Microbiology.

[54]  M. Firestone,et al.  Release of Intracellular Solutes by Four Soil Bacteria Exposed to Dilution Stress , 2000 .

[55]  Montgomery,et al.  Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian arid soils. , 2000, FEMS microbiology ecology.

[56]  Campbell O. Webb,et al.  Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees , 2000, The American Naturalist.

[57]  M. Firestone,et al.  Mechanisms for soil moisture effects on activity of nitrifying bacteria , 1995, Applied and environmental microbiology.

[58]  M. Potts Desiccation tolerance of prokaryotes , 1994, Microbiological reviews.

[59]  M. Firestone,et al.  Relationship between Desiccation and Exopolysaccharide Production in a Soil Pseudomonas sp , 1992, Applied and environmental microbiology.

[60]  M. Firestone,et al.  Microbial biomass response to a rapid increase in water potential when dry soil is wetted , 1987 .

[61]  M. Goodfellow,et al.  Ecology of actinomycetes. , 1983, Annual review of microbiology.

[62]  D M Griffin,et al.  WATER POTENTIAL AND WOOD-DECAY FUNGI , 1977 .

[63]  R. Macarthur,et al.  The Theory of Island Biogeography , 1969 .