Autophagy-dependent cell death – where, how and why a cell eats itself to death

ABSTRACT Autophagy as a means of cell killing was first advanced by Clark's phenotypic description of ‘Type II autophagic cell death’ in 1990. However, this phenomenon later came into question, because the presence of autophagosomes in dying cells does not necessarily signify that autophagy is the cause of demise, but rather may reflect the efforts of the cell to prevent it. Resolution of this issue comes from a more careful definition of autophagy-dependent cell death (ADCD) as a regulated cell death that is shown experimentally to require different components of the autophagy machinery without involvement of alternative cell death pathways. Following these strict criteria, ADCD has been validated in both lower model organisms and mammalian cells, highlighting its importance for developmental and pathophysiological cell death. Recently, researchers have defined additional morphological criteria that characterize ADCD and begun to explore how the established, well-studied autophagy pathway is subverted from a survival to a death function. This Review explores validated models of ADCD and focuses on the current understanding of the mechanisms by which autophagy can kill a cell. Summary: A review of recent findings that demonstrate autophagy-dependent cell death in various contexts and begin to elucidate molecular mechanisms that render autophagy a lethal process.

[1]  A. Kimchi,et al.  Death by over-eating: The Gaucher disease associated gene GBA1, identified in a screen for mediators of autophagic cell death, is necessary for developmental cell death in Drosophila midgut , 2017, Cell cycle.

[2]  E. White,et al.  Role of Autophagy in Cancer Prevention , 2011, Cancer Prevention Research.

[3]  Feng Qi Han,et al.  Neuronal injury in rat model of permanent focal cerebral ischemia is associated with activation of autophagic and lysosomal pathways , 2008, Autophagy.

[4]  Eric H. Baehrecke,et al.  Autophagy, Not Apoptosis, Is Essential for Midgut Cell Death in Drosophila , 2009, Current Biology.

[5]  R. Xavier,et al.  Autosis is a Na+,K+-ATPase–regulated form of cell death triggered by autophagy-inducing peptides, starvation, and hypoxia–ischemia , 2013, Proceedings of the National Academy of Sciences.

[6]  Sharad Kumar,et al.  Cell death by autophagy: facts and apparent artefacts , 2011, Cell Death and Differentiation.

[7]  T. Asano,et al.  Distinct Roles of Autophagy in the Heart During Ischemia and Reperfusion: Roles of AMP-Activated Protein Kinase and Beclin 1 in Mediating Autophagy , 2007, Circulation research.

[8]  D. Piwnica-Worms,et al.  Valosin-containing protein (VCP) is required for autophagy and is disrupted in VCP disease , 2009, The Journal of cell biology.

[9]  M. Bug,et al.  Emerging functions of the VCP/p97 AAA-ATPase in the ubiquitin system , 2012, Nature Cell Biology.

[10]  Q. Pan,et al.  Ferroptosis is an autophagic cell death process , 2016, Cell Research.

[11]  Binghe Guan,et al.  Inhibition of Peroxynitrite-Induced Mitophagy Activation Attenuates Cerebral Ischemia-Reperfusion Injury , 2018, Molecular Neurobiology.

[12]  J. Puyal,et al.  Postischemic treatment of neonatal cerebral ischemia should target autophagy , 2009, Annals of neurology.

[13]  P. Schaap,et al.  Secreted Cyclic Di-GMP Induces Stalk Cell Differentiation in the Eukaryote Dictyostelium discoideum , 2015, Journal of bacteriology.

[14]  M. White,et al.  RalB and the Exocyst Mediate the Cellular Starvation Response by Direct Activation of Autophagosome Assembly , 2011, Cell.

[15]  J. Backer The intricate regulation and complex functions of the Class III phosphoinositide 3-kinase Vps34. , 2016, The Biochemical journal.

[16]  T. Xu,et al.  Distinct requirements of Autophagy-related genes in programmed cell death , 2015, Cell Death and Differentiation.

[17]  Changlian Zhu,et al.  Neuroprotection by selective neuronal deletion of Atg7 in neonatal brain injury , 2016, Autophagy.

[18]  A. Kimchi,et al.  Signalome-wide RNAi screen identifies GBA1 as a positive mediator of autophagic cell death , 2017, Cell Death and Differentiation.

[19]  Yongqiang Chen,et al.  Hypoxia induces autophagic cell death in apoptosis-competent cells through a mechanism involving BNIP3 , 2008, Autophagy.

[20]  A. Tee,et al.  mTOR and autophagy: a dynamic relationship governed by nutrients and energy. , 2014, Seminars in cell & developmental biology.

[21]  Miriam Eisenstein,et al.  DAP‐kinase‐mediated phosphorylation on the BH3 domain of beclin 1 promotes dissociation of beclin 1 from Bcl‐XL and induction of autophagy , 2009, EMBO reports.

[22]  D. Rubinsztein,et al.  Mammalian Autophagy: How Does It Work? , 2016, Annual review of biochemistry.

[23]  Y. Peterson,et al.  Ceramide targets autophagosomes to mitochondria and induces lethal mitophagy , 2012, Nature chemical biology.

[24]  Eun-Kyoung Kim,et al.  Phosphorylation of p62 by AMP-activated protein kinase mediates autophagic cell death in adult hippocampal neural stem cells , 2017, The Journal of Biological Chemistry.

[25]  S. Fulda,et al.  Impairment of lysosomal integrity by B10, a glycosylated derivative of betulinic acid, leads to lysosomal cell death and converts autophagy into a detrimental process , 2012, Cell Death and Differentiation.

[26]  D. Klionsky,et al.  Regulation mechanisms and signaling pathways of autophagy. , 2009, Annual review of genetics.

[27]  Yong-Gang Xu,et al.  RNA interference-mediated downregulation of Beclin1 attenuates cerebral ischemic injury in rats , 2009, Acta Pharmacologica Sinica.

[28]  N. Mizushima,et al.  Autophagy in mammalian development and differentiation , 2010, Nature Cell Biology.

[29]  Regulation of autophagic cell death by glycogen synthase kinase-3β in adult hippocampal neural stem cells following insulin withdrawal , 2015, Molecular Brain.

[30]  P. Codogno,et al.  Autophagic cell death: Loch Ness monster or endangered species? , 2011, Autophagy.

[31]  M. Komatsu,et al.  Autophagy-monitoring and autophagy-deficient mice , 2017, Autophagy.

[32]  E. Baehrecke,et al.  Growth Arrest and Autophagy Are Required for Salivary Gland Cell Degradation in Drosophila , 2007, Cell.

[33]  K. Chung,et al.  Mediation of Autophagic Cell Death by Type 3 Ryanodine Receptor (RyR3) in Adult Hippocampal Neural Stem Cells , 2016, Front. Cell. Neurosci..

[34]  M. Eisenstein,et al.  Non-canonical activation of DAPK2 by AMPK constitutes a new pathway linking metabolic stress to autophagy , 2018, Nature Communications.

[35]  Li Yu,et al.  Recent progress in autophagic lysosome reformation , 2017, Traffic.

[36]  J. Harper,et al.  Uba1 functions in Atg7- and Atg3-independent autophagy , 2013, Nature Cell Biology.

[37]  Changhong Shi,et al.  Cabazitaxel-induced autophagy via the PI3K/Akt/mTOR pathway contributes to A549 cell death , 2016, Molecular medicine reports.

[38]  S. Wesselborg,et al.  Role of AMPK-mTOR-Ulk1/2 in the Regulation of Autophagy: Cross Talk, Shortcuts, and Feedbacks , 2011, Molecular and Cellular Biology.

[39]  P. Codogno,et al.  Autosis occurs in the liver of patients with severe anorexia nervosa , 2015, Hepatology.

[40]  M. Murphy,et al.  A conserved domain in exon 2 coding for the human and murine ARF tumor suppressor protein is required for autophagy induction , 2013, Autophagy.

[41]  Tatsushi Yoshida,et al.  Role of Atg5-dependent cell death in the embryonic development of Bax/Bak double-knockout mice , 2017, Cell Death and Differentiation.

[42]  M. Bjornsti,et al.  4-Hydroxytamoxifen induces autophagic death through K-Ras degradation. , 2013, Cancer research.

[43]  I. Germano,et al.  Arsenic trioxide induces autophagic cell death in malignant glioma cells by upregulation of mitochondrial cell death protein BNIP3 , 2005, Oncogene.

[44]  Liana C. Silva,et al.  Ablation of ceramide synthase 2 strongly affects biophysical properties of membranes[S] , 2012, Journal of Lipid Research.

[45]  Chunlai Nie,et al.  PP2A mediates apoptosis or autophagic cell death in multiple myeloma cell lines , 2017, Oncotarget.

[46]  C. Chu,et al.  Mitochondrially localized ERK2 regulates mitophagy and autophagic cell stress , 2008, Autophagy.

[47]  P. Bonaldo,et al.  Cardiac glycoside ouabain induces autophagic cell death in non-small cell lung cancer cells via a JNK-dependent decrease of Bcl-2. , 2014, Biochemical pharmacology.

[48]  S. Fulda,et al.  Cell death by autophagy: emerging molecular mechanisms and implications for cancer therapy , 2015, Oncogene.

[49]  Eun-Kyoung Kim,et al.  Valosin-containing protein is a key mediator between autophagic cell death and apoptosis in adult hippocampal neural stem cells following insulin withdrawal , 2016, Molecular Brain.

[50]  E. Zalckvar,et al.  A short mitochondrial form of p19ARF induces autophagy and caspase-independent cell death. , 2006, Molecular cell.

[51]  N. Mizushima,et al.  The role of Atg proteins in autophagosome formation. , 2011, Annual review of cell and developmental biology.

[52]  Z. Mészár,et al.  Alterations in the properties of the cell membrane due to glycosphingolipid accumulation in a model of Gaucher disease , 2018, Scientific Reports.

[53]  X. Gou,et al.  A JNK-mediated autophagy pathway that triggers c-IAP degradation and necroptosis for anticancer chemotherapy , 2013, Oncogene.

[54]  J. Goudreau,et al.  Autophagic Death of Adult Hippocampal Neural Stem Cells Following Insulin Withdrawal , 2008, Stem cells.

[55]  S. Fulda,et al.  Obatoclax (GX15-070) triggers necroptosis by promoting the assembly of the necrosome on autophagosomal membranes , 2013, Cell Death and Differentiation.

[56]  Induction , 1999 .

[57]  Yi-qun Yu,et al.  Kaempferol induces autophagic cell death of hepatocellular carcinoma cells via activating AMPK signaling , 2017, Oncotarget.

[58]  L. Ouyang,et al.  Discovery of a Small-Molecule Bromodomain-Containing Protein 4 (BRD4) Inhibitor That Induces AMP-Activated Protein Kinase-Modulated Autophagy-Associated Cell Death in Breast Cancer. , 2017, Journal of medicinal chemistry.

[59]  C. Thummel,et al.  Mechanisms of steroid-triggered programmed cell death in Drosophila. , 2005, Seminars in cell & developmental biology.

[60]  Douglas Hanahan,et al.  Dual Targeting of the Autophagic Regulatory Circuitry in Gliomas with Repurposed Drugs Elicits Cell-Lethal Autophagy and Therapeutic Benefit. , 2015, Cancer cell.

[61]  C. Thummel,et al.  A balance between the diap1 death inhibitor and reaper and hid death inducers controls steroid-triggered cell death in Drosophila. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Kai-Chien Yang,et al.  Lapatinib induces autophagic cell death and differentiation in acute myeloblastic leukemia , 2016, OncoTargets and therapy.

[63]  Tsuyoshi Watanabe,et al.  Zanthoxylum fruit extract from Japanese pepper promotes autophagic cell death in cancer cells , 2016, Oncotarget.

[64]  M. Lotze,et al.  Autophagy promotes ferroptosis by degradation of ferritin , 2016, Autophagy.

[65]  A. Kimchi,et al.  DAPK2 is a novel regulator of mTORC1 activity and autophagy , 2014, Cell Death and Differentiation.

[66]  Joo‐Hang Kim,et al.  Essential Roles of Atg5 and FADD in Autophagic Cell Death , 2005, Journal of Biological Chemistry.

[67]  B. Ni,et al.  Bcl-2/E1B-19KD-Interacting Protein 3/Light Chain 3 Interaction Induces Mitophagy in Spinal Cord Injury in Rats Both In Vivo and In Vitro. , 2018, Journal of neurotrauma.

[68]  Y. Kondo,et al.  Pivotal Role of the Cell Death Factor BNIP3 in Ceramide-Induced Autophagic Cell Death in Malignant Glioma Cells , 2004, Cancer Research.

[69]  E. Baehrecke,et al.  Caspases function in autophagic programmed cell death in Drosophila , 2003, Development.

[70]  Guang-Chao Chen,et al.  Ecdysone-Induced Receptor Tyrosine Phosphatase PTP52F Regulates Drosophila Midgut Histolysis by Enhancement of Autophagy and Apoptosis , 2014, Molecular and Cellular Biology.

[71]  A. Bielawska,et al.  Ceramide activates lysosomal cathepsin B and cathepsin D to attenuate autophagy and induces ER stress to suppress myeloid-derived suppressor cells , 2016, Oncotarget.

[72]  J. Puyal,et al.  Involvement of autophagy in hypoxic-excitotoxic neuronal death , 2014, Autophagy.

[73]  Chunming Jiang,et al.  Renal ischemia/reperfusion‐induced mitophagy protects against renal dysfunction via Drp1‐dependent‐pathway , 2018, Experimental cell research.

[74]  Liang Liu,et al.  Thalidezine, a novel AMPK activator, eliminates apoptosis-resistant cancer cells through energy-mediated autophagic cell death , 2017, Oncotarget.

[75]  Simon C Watkins,et al.  Regulation of autophagy by extracellular signal-regulated protein kinases during 1-methyl-4-phenylpyridinium-induced cell death. , 2007, The American journal of pathology.

[76]  Young In Park,et al.  From the Cover: Ethylmercury-Induced Oxidative and Endoplasmic Reticulum Stress-Mediated Autophagic Cell Death: Involvement of Autophagosome-Lysosome Fusion Arrest. , 2016, Toxicological sciences : an official journal of the Society of Toxicology.

[77]  Jin-Ming Yang,et al.  Sirt3-mediated mitophagy protects tumor cells against apoptosis under hypoxia , 2016, Oncotarget.

[78]  A. Thorburn,et al.  Autophagy variation within a cell population determines cell fate via selective degradation of Fap-1 , 2013, Nature Cell Biology.

[79]  L. Staudt,et al.  Control of autophagic cell death by caspase-10 in multiple myeloma. , 2013, Cancer cell.

[80]  Antonia P. Sagona,et al.  Autophagic degradation of dBruce controls DNA fragmentation in nurse cells during late Drosophila melanogaster oogenesis , 2010, The Journal of cell biology.

[81]  S. Campello,et al.  AMBRA1-Mediated Mitophagy Counteracts Oxidative Stress and Apoptosis Induced by Neurotoxicity in Human Neuroblastoma SH-SY5Y Cells , 2018, Front. Cell. Neurosci..

[82]  V. Radha,et al.  M98K-OPTN induces transferrin receptor degradation and RAB12-mediated autophagic death in retinal ganglion cells , 2013, Autophagy.

[83]  A second signal for autophagic cell death? , 2010, Autophagy.

[84]  Keiji Tanaka,et al.  Inhibition of autophagy prevents hippocampal pyramidal neuron death after hypoxic-ischemic injury. , 2008, The American journal of pathology.

[85]  S. Amin,et al.  Autophagosomal Membrane Serves as Platform for Intracellular Death-inducing Signaling Complex (iDISC)-mediated Caspase-8 Activation and Apoptosis* , 2012, The Journal of Biological Chemistry.

[86]  G. Robert,et al.  Differentiation inducing factor 3 mediates its anti-leukemic effect through ROS-dependent DRP1-mediated mitochondrial fission and induction of caspase-independent cell death , 2016, Oncotarget.

[87]  N. Chandel,et al.  The kinase Jnk2 promotes stress-induced mitophagy by targeting the small mitochondrial form of the tumor suppressor ARF for degradation , 2015, Nature Immunology.

[88]  E. Baehrecke,et al.  Ral GTPase and the exocyst regulate autophagy in a tissue‐specific manner , 2016, EMBO reports.

[89]  K. Guan,et al.  Differential Regulation of Distinct Vps34 Complexes by AMPK in Nutrient Stress and Autophagy , 2013, Cell.

[90]  David P. Davis,et al.  Akt inhibition promotes autophagy and sensitizes PTEN-null tumors to lysosomotropic agents , 2008, The Journal of cell biology.

[91]  Mary A. Logan,et al.  Activation of autophagy during cell death requires the engulfment receptor Draper , 2010, Nature.

[92]  D. Green,et al.  The Autophagy Machinery Controls Cell Death Switching between Apoptosis and Necroptosis. , 2016, Developmental cell.

[93]  S. Lipton,et al.  Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018 , 2018, Cell Death & Differentiation.

[94]  Maike A. Laussmann,et al.  Proteasome inhibition can induce an autophagy-dependent apical activation of caspase-8 , 2011, Cell Death and Differentiation.

[95]  Mary A. Logan,et al.  Complement-Related Regulates Autophagy in Neighboring Cells , 2017, Cell.

[96]  Jiahuai Han,et al.  Orphan nuclear receptor TR3 acts in autophagic cell death via mitochondrial signaling pathway. , 2014, Nature chemical biology.

[97]  Sudeshna Dutta,et al.  Autophagic programmed cell death by selective catalase degradation. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[98]  K. Kinghorn,et al.  The emerging role of autophagic-lysosomal dysfunction in Gaucher disease and Parkinson's disease , 2017, Neural regeneration research.

[99]  S. Jiang,et al.  Cul3-KLHL20 Ubiquitin Ligase Governs the Turnover of ULK1 and VPS34 Complexes to Control Autophagy Termination. , 2016, Molecular cell.

[100]  Tianyue Jiang,et al.  Resveratrol attenuates oxidative damage through activating mitophagy in an in vitro model of Alzheimer's disease. , 2018, Toxicology letters.

[101]  P. Golstein,et al.  Atg1 allows second-signaled autophagic cell death in Dictyostelium , 2011, Autophagy.

[102]  D. Lawrence,et al.  Cullin3-Based Polyubiquitination and p62-Dependent Aggregation of Caspase-8 Mediate Extrinsic Apoptosis Signaling , 2009, Cell.

[103]  E. Fon,et al.  Short Mitochondrial ARF Triggers Parkin/PINK1-dependent Mitophagy* , 2014, The Journal of Biological Chemistry.