The most important thing is the tail: Multitudinous functionalities of intrinsically disordered protein termini
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[1] V. Zhurkin,et al. p53-induced DNA bending and twisting: p53 tetramer binds on the outer side of a DNA loop and increases DNA twisting. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[2] Monika Fuxreiter,et al. Fuzzy complexes: a more stochastic view of protein function. , 2012, Advances in experimental medicine and biology.
[3] T Hoshi,et al. Biophysical and molecular mechanisms of Shaker potassium channel inactivation , 1990, Science.
[4] P. Permi,et al. Enterohaemorrhagic Escherichia coli exploits a tryptophan switch to hijack host f-actin assembly. , 2012, Structure.
[5] V. Uversky. A decade and a half of protein intrinsic disorder: Biology still waits for physics , 2013, Protein science : a publication of the Protein Society.
[6] Norman E. Davey,et al. How viruses hijack cell regulation. , 2011, Trends in biochemical sciences.
[7] A M Gronenborn,et al. NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1. , 1993, Science.
[8] A. Dunker,et al. Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B. , 2011, Molecular and biochemical parasitology.
[9] M. Pufall,et al. Autoinhibitory domains: modular effectors of cellular regulation. , 2002, Annual review of cell and developmental biology.
[10] Xiang-Jiao Yang,et al. Multisite protein modification and intramolecular signaling , 2005, Oncogene.
[11] S. Doublié,et al. Overproduction, crystallization and preliminary crystallographic analysis of a novel human DNA-repair enzyme that recognizes oxidative DNA damage. , 2004, Acta crystallographica. Section D, Biological crystallography.
[12] H. Dyson,et al. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. , 1999, Journal of molecular biology.
[13] A Keith Dunker,et al. Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. , 2007, Journal of proteome research.
[14] Catherine L. Lawson,et al. The three-dimensional structure of trp repressor , 1985, Nature.
[15] Jianxing Song,et al. The N‐ and C‐termini of the human Nogo molecules are intrinsically unstructured: Bioinformatics, CD, NMR characterization, and functional implications , 2007, Proteins.
[16] T. Pawson,et al. Post-translational modifications in signal integration , 2010, Nature Structural &Molecular Biology.
[17] Christopher J. Oldfield,et al. Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. , 2007, Journal of proteome research.
[18] L. Iakoucheva,et al. Intrinsic disorder in cell-signaling and cancer-associated proteins. , 2002, Journal of molecular biology.
[19] V. Uversky. Unusual biophysics of intrinsically disordered proteins. , 2013, Biochimica et biophysica acta.
[20] K. Vousden,et al. Activation and activities of the p53 tumour suppressor protein , 2001, British Journal of Cancer.
[21] M. Bolognesi,et al. Function and Structure of Inherently Disordered Proteins This Review Comes from a Themed Issue on Proteins Edited Prediction of Non-folding Proteins and Regions Frequency of Disordered Regions Protein Evolution Partitioning Unstructured Proteins and Regions into Groups Involvement of Inherently Diso , 2022 .
[22] V. Ramakrishnan,et al. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA. , 2002, Journal of molecular biology.
[23] P. Tompa,et al. Intrinsic disorder in cell signaling and gene transcription , 2012, Molecular and Cellular Endocrinology.
[24] Christopher J. Oldfield,et al. Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling , 2005, Journal of molecular recognition : JMR.
[25] A. Ruoho,et al. N-terminal Half of the cGMP Phosphodiesterase γ-Subunit Contributes to Stabilization of the GTPase-accelerating Protein Complex* , 2011, The Journal of Biological Chemistry.
[26] Christopher J. Oldfield,et al. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. , 2007, Journal of proteome research.
[27] D. Fass,et al. Intrinsic disorder in the C-terminal domain of the Shaker voltage-activated K+ channel modulates its interaction with scaffold proteins , 2007, Proceedings of the National Academy of Sciences.
[28] Ann-Beth Nørholm,et al. The intracellular distal tail of the Na+/H+ exchanger NHE1 is intrinsically disordered: implications for NHE1 trafficking. , 2011, Biochemistry.
[29] H. Dyson,et al. Intrinsically unstructured proteins and their functions , 2005, Nature Reviews Molecular Cell Biology.
[30] J. Koch,et al. The C Terminus of the Alb3 Membrane Insertase Recruits cpSRP43 to the Thylakoid Membrane* , 2009, The Journal of Biological Chemistry.
[31] M. Seeger,et al. Kinesin tail domains are intrinsically disordered , 2012, Proteins.
[32] R. Desrosiers,et al. The Tale of the Long Tail: the Cytoplasmic Domain of HIV-1 gp41 , 2012, Journal of Virology.
[33] Barry Robson,et al. Protein folding revisited. , 2008, Progress in molecular biology and translational science.
[34] Alain R. Bonny,et al. The disordered C-terminus of the RNA polymerase II phosphatase FCP1 is partially helical in the unbound state. , 2011, Biochemical and biophysical research communications.
[35] A. Dunker,et al. Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life , 2012, Journal of biomolecular structure & dynamics.
[36] Peter Tompa,et al. Intrinsically disordered chaperones in plants and animals. , 2010, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[37] A Keith Dunker,et al. Intrinsic disorder in scaffold proteins: getting more from less. , 2008, Progress in biophysics and molecular biology.
[38] A. Gronenborn,et al. The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors. , 1998, Journal of molecular biology.
[39] Vladimir N Uversky,et al. Intrinsic disorder-based protein interactions and their modulators. , 2013, Current pharmaceutical design.
[40] S. Colombo,et al. How tails guide tail-anchored proteins to their destinations. , 2007, Current opinion in cell biology.
[41] A. Varshavsky,et al. Heat-inducible degron: a method for constructing temperature-sensitive mutants. , 1994, Science.
[42] T. Gibson,et al. A careful disorderliness in the proteome: Sites for interaction and targets for future therapies , 2008, FEBS letters.
[43] T. Ishikawa. Structural biology of cytoplasmic and axonemal dyneins. , 2012, Journal of structural biology.
[44] C. Brown,et al. Intrinsic protein disorder in complete genomes. , 2000, Genome informatics. Workshop on Genome Informatics.
[45] W. Houry,et al. The Stability of the Small Nucleolar Ribonucleoprotein (snoRNP) Assembly Protein Pih1 in Saccharomyces cerevisiae Is Modulated by Its C Terminus* , 2012, The Journal of Biological Chemistry.
[46] J. Hoh,et al. Functional protein domains from the thermally driven motion of polypeptide chains: A proposal , 1998, Proteins.
[47] E. Fischer. Einfluss der Configuration auf die Wirkung der Enzyme , 1894 .
[48] F. Berger,et al. The Intrinsically Disordered N-terminal Domain of Thymidylate Synthase Targets the Enzyme to the Ubiquitin-independent Proteasomal Degradation Pathway* , 2009, The Journal of Biological Chemistry.
[49] S. Eom,et al. Structural basis for asymmetric association of the betaPIX coiled coil and shank PDZ. , 2010, Journal of molecular biology.
[50] F. Berger,et al. Functional dissection of the N-terminal degron of human thymidylate synthase. , 2010, The Biochemical journal.
[51] V. Uversky. Intrinsically Disordered Proteins , 2014 .
[52] G. Wagner,et al. Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface , 2008, Proceedings of the National Academy of Sciences.
[53] Yongqi Huang,et al. Anchoring Intrinsically Disordered Proteins to Multiple Targets: Lessons from N-Terminus of the p53 Protein , 2011, International journal of molecular sciences.
[54] P. Tompa. The interplay between structure and function in intrinsically unstructured proteins , 2005, FEBS letters.
[55] T. Sulea,et al. Binding the atypical RA domain of Ste50p to the unfolded Opy2p cytoplasmic tail is essential for the high-osmolarity glycerol pathway. , 2009, Molecular biology of the cell.
[56] Christopher J. Oldfield,et al. Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding , 2013, Protein science : a publication of the Protein Society.
[57] V. Uversky. Natively unfolded proteins: A point where biology waits for physics , 2002, Protein science : a publication of the Protein Society.
[58] P. Tompa,et al. Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. , 2008, Trends in biochemical sciences.
[59] Norman E. Davey,et al. Motif switches: decision-making in cell regulation. , 2012, Current opinion in structural biology.
[60] Michail Yu. Lobanov,et al. Library of Disordered Patterns in 3D Protein Structures , 2010, PLoS Comput. Biol..
[61] R. Kammerer,et al. Crystal structure of a naturally occurring parallel right-handed coiled coil tetramer , 2001, Nature Structural Biology.
[62] F. Inagaki,et al. Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA. , 2012, Cell host & microbe.
[63] Hyeong Jun An,et al. Estimating the size of the human interactome , 2008, Proceedings of the National Academy of Sciences.
[64] P. Privalov,et al. DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution. , 2003, Journal of molecular biology.
[65] M. Inouye,et al. The intramolecular chaperone-mediated protein folding. , 2008, Current opinion in structural biology.
[66] V. Uversky,et al. Why are “natively unfolded” proteins unstructured under physiologic conditions? , 2000, Proteins.
[67] J. Hoh,et al. Entropic exclusion by neurofilament sidearms: a mechanism for maintaining interfilament spacing. , 1997, Biochemistry.
[68] Lukasz Kurgan,et al. More than just tails: intrinsic disorder in histone proteins. , 2012, Molecular bioSystems.
[69] Vladimir N Uversky,et al. What does it mean to be natively unfolded? , 2002, European journal of biochemistry.
[70] Christopher J. Oldfield,et al. Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners , 2008, BMC Genomics.
[71] D. Notterman,et al. Analysis of p53-regulated gene expression patterns using oligonucleotide arrays. , 2000, Genes & development.
[72] G. Manfioletti,et al. Conformational role for the C-terminal tail of the intrinsically disordered high mobility group A (HMGA) chromatin factors. , 2011, Journal of proteome research.
[73] K. Winklhofer,et al. α-Helical Domains Promote Translocation of Intrinsically Disordered Polypeptides into the Endoplasmic Reticulum* , 2009, The Journal of Biological Chemistry.
[74] S. Phillips,et al. Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor , 1989, Nature.
[75] P. Tompa. Intrinsically disordered proteins: a 10-year recap. , 2012, Trends in biochemical sciences.
[76] H. Dyson,et al. Coupling of folding and binding for unstructured proteins. , 2002, Current opinion in structural biology.
[77] L. M. Espinoza-Fonseca,et al. Aromatic residues link binding and function of intrinsically disordered proteins. , 2012, Molecular bioSystems.
[78] R. Lemieux,et al. How Emil Fischer was led to the lock and key concept for enzyme specificity. , 1994, Advances in carbohydrate chemistry and biochemistry.
[79] R. Cornell,et al. The Intrinsically Disordered Nuclear Localization Signal and Phosphorylation Segments Distinguish the Membrane Affinity of Two Cytidylyltransferase Isoforms* , 2011, The Journal of Biological Chemistry.
[80] Monika Fuxreiter,et al. Close encounters of the third kind: disordered domains and the interactions of proteins , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[81] Mario Lebendiker,et al. Mechanism of the Interaction between the Intrinsically Disordered C-Terminus of the Pro-Apoptotic ARTS Protein and the Bir3 Domain of XIAP , 2011, PloS one.
[82] H. Vogel,et al. Intrinsically disordered N-terminus of calponin homology-associated smooth muscle protein (CHASM) interacts with the calponin homology domain to enable tropomyosin binding. , 2012, Biochemistry.
[83] A Keith Dunker,et al. Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[84] J. S. Sodhi,et al. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. , 2004, Journal of molecular biology.
[85] P. Tompa. Intrinsically unstructured proteins. , 2002, Trends in biochemical sciences.
[86] D. Koshland. Application of a Theory of Enzyme Specificity to Protein Synthesis. , 1958, Proceedings of the National Academy of Sciences of the United States of America.
[87] V. Uversky. Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexes. , 2011, Chemical Society reviews.
[88] P. Jois,et al. The N-terminal part of Binder of SPerm 5 (BSP5), which promotes sperm capacitation in bovine species is intrinsically disordered. , 2010, Biochemical and biophysical research communications.
[89] R. Montelaro,et al. C-terminal tail of human immunodeficiency virus gp41: functionally rich and structurally enigmatic , 2013, The Journal of general virology.
[90] Christopher J. Oldfield,et al. Intrinsically disordered protein. , 2001, Journal of molecular graphics & modelling.
[91] P. Romero,et al. Natively Disordered Proteins , 2008, Applied bioinformatics.
[92] H Jane Dyson,et al. Expanding the proteome: disordered and alternatively folded proteins , 2011, Quarterly Reviews of Biophysics.
[93] N. Oezguen,et al. The disordered C-terminal domain of human DNA glycosylase NEIL1 contributes to its stability via intramolecular interactions. , 2013, Journal of molecular biology.
[94] M. Hodsdon,et al. An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors , 2011, Proceedings of the National Academy of Sciences.
[95] G. Clore,et al. A Novel Membrane Anchor Function for the N-terminal Amphipathic Sequence of the Signal-transducing Protein IIAGlucose of the Escherichia coli Phosphotransferase System* , 2000, The Journal of Biological Chemistry.
[96] K. Mihara,et al. Characterization of signal that directs C-tail-anchored proteins to mammalian mitochondrial outer membrane. , 2002, Molecular biology of the cell.
[97] Marc S. Cortese,et al. Flexible nets , 2005, The FEBS journal.
[98] Benjamin A. Shoemaker,et al. Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[99] W. El-Deiry,et al. p53-induced gene expression analysis. , 2003, Methods in molecular biology.
[100] Z Otwinowski,et al. Flexibility of the DNA‐binding domains of trp repressor , 1988, Proteins.
[101] P. Burgers,et al. tale of two tails : Activation of DNA damage checkpoint kinase Mec 1 / ATR by the-1-1 clamp and by Dpb 11 / TopBP 1 asundhara , 2009 .
[102] Geoffrey Woollard,et al. Structure and intrinsic disorder in protein autoinhibition. , 2013, Structure.
[103] S. Haslam,et al. Regulation of Estrogen Receptor (cid:1) N-Terminus Conformation and Function by Peptidyl Prolyl Isomerase Pin1 , 2022 .
[104] R. Konrat,et al. Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq , 2011, Nucleic acids research.
[105] P. Trost,et al. Conformational Selection and Folding-upon-binding of Intrinsically Disordered Protein CP12 Regulate Photosynthetic Enzymes Assembly* , 2012, The Journal of Biological Chemistry.
[106] P. S. Kim,et al. High-resolution protein design with backbone freedom. , 1998, Science.
[107] Eric D. Ross,et al. Intrinsic Protein Disorder, Amino Acid Composition, and Histone Terminal Domains* , 2006, Journal of Biological Chemistry.
[108] K. Nishikawa,et al. Intrinsically disordered regions have specific functions in mitochondrial and nuclear proteins. , 2012, Molecular bioSystems.
[109] Yaakov Levy,et al. Modulating Protein-DNA Interactions by Post-Translational Modifications at Disordered Regions , 2011, Pacific Symposium on Biocomputing.
[110] M. Inouye,et al. Backbone dynamics of the natively unfolded pro-peptide of subtilisin by heteronuclear NMR relaxation studies , 2001, Journal of biomolecular NMR.
[111] A. Dunker,et al. Sweeping away protein aggregation with entropic bristles: intrinsically disordered protein fusions enhance soluble expression. , 2012, Biochemistry.
[112] W. El-Deiry,et al. Regulation of p53 downstream genes. , 1998, Seminars in cancer biology.
[113] V. Uversky,et al. Systematic analysis of tropomodulin/tropomyosin interactions uncovers fine‐tuned binding specificity of intrinsically disordered proteins , 2011, Journal of molecular recognition : JMR.
[114] Peter Tompa,et al. The role of structural disorder in the function of RNA and protein chaperones , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[115] Christopher J. Oldfield,et al. Intrinsic disorder and functional proteomics. , 2007, Biophysical journal.
[116] Sonia Longhi,et al. What’s in a name? Why these proteins are intrinsically disordered , 2013, Intrinsically disordered proteins.
[117] A Keith Dunker,et al. Intrinsic disorder and protein function. , 2002, Biochemistry.
[118] A. Dunker,et al. Understanding protein non-folding. , 2010, Biochimica et biophysica acta.
[119] V. Uversky,et al. Protein folding revisited. A polypeptide chain at the folding – misfolding – nonfolding cross-roads: which way to go? , 2003, Cellular and Molecular Life Sciences CMLS.
[120] S. Lowe,et al. Control of apoptosis by p53 , 2003, Oncogene.
[121] Y. Levy. Intrinsically disordered regions as affinity tuners in protein–DNA interactions , 2012 .
[122] V. Uversky. Flexible nets of malleable guardians: intrinsically disordered chaperones in neurodegenerative diseases. , 2011, Chemical reviews.
[123] P. Hordijk,et al. The Rac1 hypervariable region in targeting and signaling , 2013, Small GTPases.
[124] N. Gusev,et al. The role of intrinsically disordered regions in the structure and functioning of small heat shock proteins. , 2012, Current protein & peptide science.
[125] L. Deshmukh,et al. Characterization of the neuron-specific L1-CAM cytoplasmic tail: naturally disordered in solution it exercises different binding modes for different adaptor proteins. , 2008, Biochemistry.
[126] K. Kinzler,et al. Identification and classification of p53-regulated genes. , 1999, Proceedings of the National Academy of Sciences of the United States of America.