Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling
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Yuansen Hu | Yang-yong Lv | Shuaibing Zhang | Jinshui Wang | Yuan-sen Hu | Yangyong Lv | Shuaibing Zhang | Jinshui Wang | Yangyong Lv
[1] C. Kay,et al. Hydrodynamic and optical properties of the wheat germ Em protein , 1985 .
[2] S. Clerens,et al. Fructan 1-Exohydrolases. β-(2,1)-Trimmers during Graminan Biosynthesis in Stems of Wheat? Purification, Characterization, Mass Mapping, and Cloning of Two Fructan 1-Exohydrolase Isoforms1,212 , 2003, Plant Physiology.
[3] N. Talbot,et al. The MET13 Methylenetetrahydrofolate Reductase Gene Is Essential for Infection-Related Morphogenesis in the Rice Blast Fungus Magnaporthe oryzae , 2013, PloS one.
[4] E. Heinzle,et al. Selective oxidation of UDP-glucose to UDP-glucuronic acid using permeabilized Schizosaccharomyces pombe expressing human UDP-glucose 6-dehydrogenase , 2016, Biotechnology Letters.
[5] C. Bailly,et al. Glutathione redox state, tocochromanols, fatty acids, antioxidant enzymes and protein carbonylation in sunflower seed embryos associated with after-ripening and ageing. , 2015, Annals of botany.
[6] A. Paolacci,et al. Identification and validation of reference genes for quantitative RT-PCR normalization in wheat , 2009, BMC Molecular Biology.
[7] E. Li,et al. Identification, characterization and nutritional regulation of two isoforms of acyl-coenzyme A oxidase 1 gene in Nile tilapia (Oreochromis niloticus). , 2014, Gene.
[8] J. Bewley,et al. Seed Germination and Dormancy. , 1997, The Plant cell.
[9] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[10] J. Trygg,et al. LAMINA: a tool for rapid quantification of leaf size and shape parameters , 2008, BMC Plant Biology.
[11] C. Job,et al. Toward characterizing seed vigor in alfalfa through proteomic analysis of germination and priming. , 2011, Journal of proteome research.
[12] Cahir J. O'Kane,et al. Reticulon-like-1, the Drosophila orthologue of the Hereditary Spastic Paraplegia gene reticulon 2, is required for organization of endoplasmic reticulum and of distal motor axons , 2012, Human molecular genetics.
[13] M. Mcdonald. Seed deterioration: Physiology, repair and assessment , 1999 .
[14] P. Macheroux,et al. A unique reaction in a common pathway: mechanism and function of chorismate synthase in the shikimate pathway , 1999, Planta.
[15] F. Rébeillé,et al. Interaction between glycine decarboxylase, serine hydroxymethyltransferase and tetrahydrofolate polyglutamates in pea leaf mitochondria. , 1994, The Biochemical journal.
[16] E. Cahoon,et al. A Multifunctional Acyl-Acyl Carrier Protein Desaturase from Hedera helix L. (English Ivy) Can Synthesize 16- and 18-Carbon Monoene and Diene Products* , 2005, Journal of Biological Chemistry.
[17] I. Maia,et al. Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions , 2009, BMC Molecular Biology.
[18] Xiaofeng Wang,et al. Spatial and temporal nature of reactive oxygen species production and programmed cell death in elm (Ulmus pumila L.) seeds during controlled deterioration. , 2012, Plant, cell & environment.
[19] Yongze Yuan,et al. Glutamine synthetase and glutamate dehydrogenase contribute differentially to proline accumulation in leaves of wheat (Triticum aestivum) seedlings exposed to different salinity. , 2007, Journal of plant physiology.
[20] A. Dell'aquila. Wheat seed ageing and embryo protein degradation , 1994, Seed Science Research.
[21] N. Sonenberg,et al. Poly(A)-Binding Protein-Interacting Protein 1 Binds to Eukaryotic Translation Initiation Factor 3 To Stimulate Translation , 2008, Molecular and Cellular Biology.
[22] J. Mccammon,et al. Trapping the dynamic acyl carrier protein in fatty acid biosynthesis , 2013, Nature.
[23] Ryozo Imai,et al. Differential expression of two winter wheat alpha‐tubulin genes during cold acclimation , 2008, Cell biology international.
[24] A. Scialabba,et al. Reactive oxygen species release, vitamin E, fatty acid and phytosterol contents of artificially aged radish (Raphanus sativus L.) seeds during germination , 2012, Acta Physiologiae Plantarum.
[25] R. Bino,et al. The influence of aerated hydration seed treatment on seed longevity as assessed by the viability equations. , 2000, Journal of experimental botany.
[26] J. Tommassen,et al. Identification of proteins of Neisseria meningitidis induced under iron‐limiting conditions using the isobaric tandem mass tag (TMT) labeling approach , 2009, Proteomics.
[27] Yaxi Liu,et al. Regulation, evolution, and functionality of flavonoids in cereal crops , 2013, Biotechnology Letters.
[28] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..
[29] Haiyan Gao,et al. Comparison of A and B Starch Granules from Three Wheat Varieties , 2011, Molecules.
[30] Transcriptome comparison reveals key candidate genes in response to vernalization of Oriental lily , 2016, BMC Genomics.
[31] David Beach,et al. Glycolytic enzymes can modulate cellular life span. , 2005, Cancer research.
[32] S. Bergmann,et al. Plasma membrane H+-ATPase regulation is required for auxin gradient formation preceding phototropic growth , 2014, Molecular systems biology.
[33] A. Molina,et al. Lipid transfer proteins (nsLTPs) from barley and maize leaves are potent inhibitors of bacterial and fungal plant pathogens , 1993, FEBS letters.
[34] A. Huang,et al. Oil bodies and oleosins in seeds , 1992 .
[35] P. Kersey,et al. Analysis of the bread wheat genome using whole genome shotgun sequencing , 2012, Nature.
[36] E. Khlestkina. The adaptive role of flavonoids: Emphasis on cereals , 2013 .
[37] J. Kader. LIPID-TRANSFER PROTEINS IN PLANTS. , 1996, Annual review of plant physiology and plant molecular biology.
[38] J. Ohlrogge,et al. Lipid biosynthesis. , 1995, The Plant cell.
[39] R. Urade,et al. Expression and characterization of protein disulfide isomerase family proteins in bread wheat , 2015, BMC Plant Biology.
[40] Xiao-qiong Lin,et al. Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris. , 2013, Journal of proteomics.
[41] B. Carver,et al. TaMFT-A1 Is Associated with Seed Germination Sensitive to Temperature in Winter Wheat , 2013, PloS one.
[42] Jianmin Wu,et al. KOBAS server: a web-based platform for automated annotation and pathway identification , 2006, Nucleic Acids Res..
[43] J. Tzen,et al. Surface structure and properties of plant seed oil bodies , 1992, The Journal of cell biology.
[44] W. Schapaugh,et al. Enhanced seed viability and lipid compositional changes during natural ageing by suppressing phospholipase Dα in soybean seed. , 2012, Plant biotechnology journal.
[45] Francisco R. Cantón,et al. Up-regulation and localization of asparagine synthetase in tomato leaves infected by the bacterial pathogen Pseudomonas syringae. , 2004, Plant & cell physiology.
[46] Hongtao Liu,et al. Calmodulin Is Involved in Heat Shock Signal Transduction in Wheat1 , 2003, Plant Physiology.
[47] Manuela Herman,et al. Biochemistry And Molecular Biology Of Plants , 2016 .
[48] R. Kaufman,et al. Double-Stranded RNA-Activated Protein Kinase (PKR) Is Negatively Regulated by 60S Ribosomal Subunit Protein L18 , 1999, Molecular and Cellular Biology.
[49] Weibo Jin,et al. Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum) , 2016, PloS one.
[50] Y. Liao,et al. Resistance to Fusarium head blight and seedling blight in wheat is associated with activation of a cytochrome p450 gene. , 2010, Phytopathology.
[51] Xiaoli Geng,et al. Overexpression of heat stress-responsive TaMBF1c, a wheat (Triticum aestivum L.) Multiprotein Bridging Factor, confers heat tolerance in both yeast and rice , 2014, Plant Molecular Biology.
[52] Robert Haselkorn,et al. Single-site mutations in the carboxyltransferase domain of plastid acetyl-CoA carboxylase confer resistance to grass-specific herbicides , 2007, Proceedings of the National Academy of Sciences.
[53] Xiaoying Huo,et al. Identification of miRNAs associated with dark-induced senescence in Arabidopsis , 2015, BMC Plant Biology.
[54] P. Laurent,et al. Lipids, Proteins, and Structure of Seed Oil Bodies from Diverse Species , 1993, Plant physiology.
[55] R. N. Trelease,et al. Post-Transcriptional Regulation of Catalase Isozyme Expression in Cotton Seeds. , 1991, The Plant cell.
[56] A. Rai,et al. Chemical manipulation of seed longevity of four crop species in an unfavourable storage environment , 1993 .
[57] V. Buonocore,et al. Structural and antifungal properties of a pathogenesis-related protein from wheat kernel , 1996, Journal of protein chemistry.
[58] C. Walters. Understanding the mechanisms and kinetics of seed aging , 1998, Seed Science Research.
[59] Zhimin Wang,et al. iTRAQ-based quantitative proteome and phosphoprotein characterization reveals the central metabolism changes involved in wheat grain development , 2014, BMC Genomics.
[60] R. Vierstra,et al. Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis. , 2007, The Plant journal : for cell and molecular biology.
[61] Zhiwei Cheng,et al. Proteomic Analysis Reveals Key Proteins and Phosphoproteins upon Seed Germination of Wheat (Triticum aestivum L.) , 2015, Front. Plant Sci..
[62] L. Copeland,et al. Germination of Wheat: A Functional Proteomics Analysis of the Embryo , 2009 .
[63] Xin-Hai Lin,et al. Proteome analysis of maize seeds: the effect of artificial ageing. , 2011, Physiologia plantarum.
[64] H. El-Maarouf-Bouteau,et al. Catalase is a key enzyme in seed recovery from ageing during priming. , 2011, Plant science : an international journal of experimental plant biology.
[65] D. Picard,et al. Heat-shock protein 90, a chaperone for folding and regulation , 2002, Cellular and Molecular Life Sciences CMLS.
[66] F. Collins,et al. Principles of Biochemistry , 1937, The Indian Medical Gazette.
[67] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2015, Nucleic Acids Res..
[68] M. Gnanasekar,et al. Translationally controlled tumor protein is a novel heat shock protein with chaperone-like activity. , 2009, Biochemical and biophysical research communications.
[69] C. Bailly,et al. Analyses of reactive oxygen species and antioxidants in relation to seed longevity and germination. , 2011, Methods in molecular biology.
[70] C. Job,et al. Proteome-Wide Characterization of Seed Aging in Arabidopsis: A Comparison between Artificial and Natural Aging Protocols[W][OA] , 2008, Plant Physiology.
[71] M. Inui,et al. Increased fructose 1,6-bisphosphate aldolase in plastids enhances growth and photosynthesis of tobacco plants. , 2012, Journal of experimental botany.
[72] P. G. Arnison,et al. Degradation of deoxynivalenol by suspension cultures of the fusarium head blight resistant wheat cultivar Frontana , 1986 .
[73] N. Karp,et al. Addressing Accuracy and Precision Issues in iTRAQ Quantitation* , 2010, Molecular & Cellular Proteomics.
[74] H. Buerstmayr,et al. Cloning and characterization of the ribosomal protein L3 (RPL3) gene family from Triticum aestivum , 2007, Molecular Genetics and Genomics.
[75] R. H. Ellis,et al. Seed and seedling vigour in relation to crop growth and yield , 1992, Plant Growth Regulation.
[76] W. Heydecker,et al. Accelerated Germination by Osmotic Seed Treatment , 1973, Nature.
[77] H. Bergès,et al. The homoeologous genes encoding chalcone-flavanone isomerase in Triticum aestivum L.: structural characterization and expression in different parts of wheat plant. , 2014, Gene.
[78] A. Bellamy,et al. Expression of translationally controlled tumour protein is regulated by calcium at both the transcriptional and post-transcriptional level. , 1999, The Biochemical journal.
[79] S. Sen-Mandi,et al. Root formation in deteriorated (aged) wheat embryos. , 1988, Plant physiology.
[80] Davide Heller,et al. STRING v10: protein–protein interaction networks, integrated over the tree of life , 2014, Nucleic Acids Res..
[81] M. Cunha,et al. Antimicrobial peptides and immunolocalization of a LTPin Vigna unguiculata seeds , 2001 .
[82] J. Vandekerckhove,et al. Proteomic analysis of arabidopsis seed germination and priming. , 2001, Plant physiology.
[83] R. Bentley,et al. The shikimate pathway--a metabolic tree with many branches. , 1990, Critical reviews in biochemistry and molecular biology.
[84] A. Segura,et al. The defensive role of nonspecific lipid-transfer proteins in plants. , 1995, Trends in microbiology.
[85] Sophia Ng,et al. Reduced mitochondrial and ascorbate-glutathione activity after artificial ageing in soybean seed. , 2014, Journal of plant physiology.
[86] Shu Wang,et al. Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination , 2016, BMC Genomics.
[87] Jitian Xiao,et al. iTRAQ‐based quantitative proteomic analysis reveals new metabolic pathways of wheat seedling growth under hydrogen peroxide stress , 2013, Proteomics.
[88] R. Jost,et al. Characterization of TCTP, the Translationally Controlled Tumor Protein, from Arabidopsis thaliana[C][W][OA] , 2008, The Plant Cell Online.
[89] R. Lotan,et al. Inhibition of fungal growth by wheat germ agglutinin , 1975, Nature.
[90] A. Trewavas. Signal Perception and Transduction , 2002 .
[91] J. Miller,et al. Toxic effects of deoxynivalenol on ribosomes and tissues of the spring wheat cultivars Frontana and Casavant. , 1997, Natural toxins.
[92] G. Scoles,et al. Isolation, characterization and expression analysis of a starch branching enzyme II cDNA from wheat , 1997 .
[93] T. Pshenichnikova,et al. Role of lipoxygenase in the determination of wheat grain quality , 2010, Applied Biochemistry and Microbiology.
[94] S. Silué,et al. Role of myo-inositol phosphate synthase and sucrose synthase genes in plant seed development. , 2009, Gene.
[95] M. Suh,et al. Two Arabidopsis 3-ketoacyl CoA synthase genes, KCS20 and KCS2/DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress. , 2009, The Plant journal : for cell and molecular biology.
[96] R. Peng,et al. Functional characterization of aroA from Rhizobium leguminosarum with significant glyphosate tolerance in transgenic Arabidopsis. , 2014, Journal of microbiology and biotechnology.
[97] R. Wade,et al. Allosterically gated enzyme dynamics in the cysteine synthase complex regulate cysteine biosynthesis in Arabidopsis thaliana. , 2012, Structure.
[98] J. Ozga,et al. Developmental and seed aging mediated regulation of antioxidative genes and differential expression of proteins during pre- and post-germinative phases in pea. , 2012, Journal of plant physiology.
[99] A. Goel,et al. Changes in oxidative stress enzymes during artificial ageing in cotton (Gossypium hirsutum L.) seeds. , 2003, Journal of plant physiology.
[100] Yihu Song,et al. Dynamic rheological properties of wheat flour dough and proteins , 2007 .
[101] Hai-Yun Wang,et al. GhHb1: a nonsymbiotic hemoglobin gene of cotton responsive to infection by Verticillium dahliae. , 2005, Biochimica et biophysica acta.
[102] K. Kang,et al. Developing rice embryo proteomics reveals essential role for embryonic proteins in regulation of seed germination. , 2009, Journal of proteome research.
[103] Peter R. Shewry,et al. Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain , 2013, JBIC Journal of Biological Inorganic Chemistry.
[104] P. Gulick,et al. The α-tubulin gene family in wheat (Triticum aestivum L.) and differential gene expression during cold acclimation , 2007 .
[105] Jianjun Lei,et al. Functional characterization of the translationally controlled tumor protein (TCTP) gene associated with growth and defense response in cabbage , 2010, Plant Cell, Tissue and Organ Culture (PCTOC).
[106] Zuzana Šramková,et al. Chemical composition and nutritional quality of wheat grain , 2009 .
[107] Kristina L. Ford,et al. Quantitative Proteomic Analysis of Wheat Cultivars with Differing Drought Stress Tolerance , 2011, Front. Plant Sci..
[108] R. Imai,et al. A cold inducible multidomain cystatin from winter wheat inhibits growth of the snow mold fungus, Microdochium nivale , 2006, Planta.
[109] K. Dong,et al. Albumin and globulin dynamics during grain development of elite Chinese wheat cultivar Xiaoyan 6 , 2012 .
[110] H. Vogel,et al. Current understanding of fatty acid biosynthesis and the acyl carrier protein. , 2010, The Biochemical journal.
[111] P. Proost,et al. A Potent Antimicrobial Protein from Onion Seeds Showing Sequence Homology to Plant Lipid Transfer Proteins , 1995, Plant physiology.
[112] D. Ding,et al. Proteomic analysis of heterosis during maize seed germination , 2011, Proteomics.
[113] F. Below,et al. Amino Acid Metabolism in Maize Earshoots. Implications for Assimilate Preconditioning and Nitrogen Signaling1 , 2004, Plant Physiology.
[114] J. Derek Bewleyl,et al. Seed Germination and Dormancy , 2002 .
[115] F. Dupont,et al. Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics , 2008, BMC Plant Biology.
[116] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.