Mutagenicity and repair of oxidative DNA damage: insights from studies using defined lesions.

Oxidative DNA damage has been implicated in mutagenesis, carcinogenesis and aging. Endogenous cellular processes such as aerobic metabolism generate reactive oxygen species (ROS) that interact with DNA to form dozens of DNA lesions. If unrepaired, these lesions can exert a number of deleterious effects including the induction of mutations. In an effort to understand the genetic consequences of cellular oxidative damage, many laboratories have determined the patterns of mutations generated by the interaction of ROS with DNA. Compilation of these mutational spectra has revealed that GC-->AT transitions and GC-->TA transversions are the most commonly observed mutations resulting from oxidative damage to DNA. Since mutational spectra convey only the end result of a complex cascade of events, which includes formation of multiple adducts, repair processing, and polymerase errors, it is difficult if not impossible to assess the mutational specificity of individual DNA lesions directly from these spectra. This problem is especially complicated in the case of oxidative DNA damage owing to the multiplicity of lesions formed by a single damaging agent. The task of assigning specific features of mutational spectra to individual DNA lesions has been made possible with the advent of a technology to analyze the mutational properties of single defined adducts, in vitro and in vivo. At the same time, parallel progress in the discovery and cloning of repair enzymes has advanced understanding of the biochemical mechanisms by which cells excise DNA damage. This combination of tools has brought our understanding of DNA lesions to a new level of sophistication. In this review, we summarize the known properties of individual oxidative lesions in terms of their structure, mutagenicity and repairability.

[1]  Kendric C. Smith,et al.  DNA sequence analysis of γ-radiation (anoxic)-induced and spontaneous lacId mutations in Escherichia coli K-12 , 1994 .

[2]  P. D. de Jong,et al.  Base substitutions, frameshifts, and small deletions constitute ionizing radiation-induced point mutations in mammalian cells. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[3]  E. Seeberg,et al.  The base excision repair pathway. , 1995, Trends in biochemical sciences.

[4]  M. Dizdaroglu,et al.  DNA Base Damage Generated in Vivo in Hepatic Chromatin of Mice Upon Whole Body γ-irradiation , 1993 .

[5]  R. Deslauriers,et al.  A novel intramolecular hydrogen bond in the crystal structure of 5-hydroxymethyl-2'-deoxyuridine, an antiviral and antineoplastic nucleoside. Conformational analysis of the deoxyribose ring , 1980 .

[6]  B. Ames,et al.  Assays of oxidative DNA damage biomarkers 8-oxo-2'-deoxyguanosine and 8-oxoguanine in nuclear DNA and biological fluids by high-performance liquid chromatography with electrochemical detection. , 1994, Methods in enzymology.

[7]  J. Essigmann,et al.  Characterization of a mammalian homolog of the Escherichia coli MutY mismatch repair protein , 1995, Molecular and cellular biology.

[8]  M. Dizdaroglu Chemical determination of oxidative DNA damage by gas chromatography-mass spectrometry. , 1994, Methods in enzymology.

[9]  K. Yarema,et al.  Evaluation of the Genetic Effects of Defined DNA Lesions Formed by DNA-Damaging Agents , 1995 .

[10]  J. G. Scandalios,et al.  Oxidative stress and the molecular biology of antioxidant defenses. , 1997 .

[11]  M. Hagan,et al.  Formation of cytosine glycol and 5,6-dihydroxycytosine in deoxyribonucleic acid on treatment with osmium tetroxide. , 1986, The Biochemical journal.

[12]  A. Matsukage,et al.  Misincorporation of dAMP opposite 2-hydroxyadenine, an oxidative form of adenine. , 1995, Nucleic acids research.

[13]  S. Mitra,et al.  Repair of 8-hydroxyguanine in DNA by mammalian N-methylpurine-DNA glycosylase. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[14]  P. Bolton,et al.  Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR. , 1993, The Journal of biological chemistry.

[15]  E. Ohtsuka,et al.  8-Hydroxyguanine (7,8-dihydro-8-oxoguanine) in hot spots of the c-Ha-ras gene: effects of sequence contexts on mutation spectra. , 1995, Carcinogenesis.

[16]  H. Kamiya,et al.  Effects of sequence contexts on misincorporation of nucleotides opposite 2‐hydroxyadenine , 1996, FEBS letters.

[17]  H. Aburatani,et al.  Cloning and characterization of mammalian 8-hydroxyguanine-specific DNA glycosylase/apurinic, apyrimidinic lyase, a functional mutM homologue. , 1997, Cancer research.

[18]  D. D. Levy,et al.  Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-2'-deoxyuridine-5'-triphosphate. , 1991, Nucleic acids research.

[19]  D. Shugar,et al.  Tautomerism of Isoguanosine and Solvent-Induced Keto-Enol Equilibrium , 1976, Zeitschrift fur Naturforschung. Section C, Biosciences.

[20]  S. Linn,et al.  Oxidative Damage to DNA Constituents by Iron-mediated Fenton Reactions , 1996, The Journal of Biological Chemistry.

[21]  R. Cunningham,et al.  Cloning and Expression of the cDNA Encoding the Human Homologue of the DNA Repair Enzyme, Escherichia coli Endonuclease III* , 1997, The Journal of Biological Chemistry.

[22]  H. Hayatsu,et al.  The permanganate oxidation of thymidine and thymidylic acid. , 1971, Biochimica et biophysica acta.

[23]  G. Teebor,et al.  Ionizing radiation and tritium transmutation both cause formation of 5-hydroxymethyl-2'-deoxyuridine in cellular DNA. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[24]  F. Taddei,et al.  Counteraction by MutT protein of transcriptional errors caused by oxidative damage. , 1997, Science.

[25]  John A. Murphy,et al.  Reactions of oxyl radicals with DNA. , 1995, Free radical biology & medicine.

[26]  M. Dizdaroglu Formation of an 8-hydroxyguanine moiety in deoxyribonucleic acid on gamma-irradiation in aqueous solution. , 1985, Biochemistry.

[27]  J. F. Bleichrodt,et al.  The decomposition of adenine by ionizing radiation. , 1971, Radiation research.

[28]  S A Benner,et al.  Enzymatic recognition of the base pair between isocytidine and isoguanosine. , 1993, Biochemistry.

[29]  R. Boorstein,et al.  Oxidative damage to 5-methylcytosine in DNA. , 1995, Nucleic acids research.

[30]  N. J. Gibson,et al.  Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs. , 1994, Biochemistry.

[31]  B. Ames,et al.  Hydroxymethyluracil DNA glycosylase in mammalian cells. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[32]  H. Sugiyama,et al.  Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA. , 1997, Nucleic acids research.

[33]  R. Cunningham,et al.  Endonuclease III (nth) mutants of Escherichia coli. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[34]  J. Essigmann,et al.  Kinetics of oxidized cytosine repair by endonuclease III of Escherichia coli. , 1997, Biochemistry.

[35]  A. Grollman,et al.  Site-specific mutagenesis using a gapped duplex vector: a study of translesion synthesis past 8-oxodeoxyguanosine in E. coli. , 1991, Mutation research.

[36]  R. Floyd The role of 8-hydroxyguanine in carcinogenesis. , 1990, Carcinogenesis.

[37]  T. Lindahl,et al.  Molecular cloning and functional analysis of a Schizosaccharomyces pombe homologue of Escherichia coli endonuclease III. , 1996, Nucleic acids research.

[38]  B. Ames,et al.  Endogenous oxidative damage of deoxycytidine in DNA. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[39]  Q. -. Zhang,et al.  Enzymatic release of 5-formyluracil by mammalian liver extracts from DNA irradiated with ionizing radiation. , 1995, International journal of radiation biology.

[40]  B Demple,et al.  Repair of oxidative damage to DNA: enzymology and biology. , 1994, Annual review of biochemistry.

[41]  W. Haseltine,et al.  gamma Ray induced deoxyribonucleic acid strand breaks. 3' Glycolate termini. , 1983, The Journal of biological chemistry.

[42]  T. Lindahl,et al.  Cloning and characterization of a functional human homolog of Escherichia coli endonuclease III. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[43]  B. Ames,et al.  Normal oxidative damage to mitochondrial and nuclear DNA is extensive. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[44]  V. Bohr,et al.  Repair of Oxidative Damage to Nuclear and Mitochondrial DNA in Mammalian Cells* , 1997, The Journal of Biological Chemistry.

[45]  E. Seeberg,et al.  Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts. , 1995, Biochemistry.

[46]  S. Clarkson,et al.  Defective Transcription-Coupled Repair of Oxidative Base Damage in Cockayne Syndrome Patients from XP Group G , 1997, Science.

[47]  R. Cunningham,et al.  New substrates for old enzymes. 5-Hydroxy-2'-deoxycytidine and 5-hydroxy-2'-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA N-glycosylase, while 5-hydroxy-2'-deoxyuridine is a substrate for uracil DNA N-glycosylase. , 1994, The Journal of biological chemistry.

[48]  E. Loechler The role of adduct site-specific mutagenesis in understanding how carcinogen-DNA adducts cause mutations: perspective, prospects and problems. , 1996, Carcinogenesis.

[49]  J. Miller,et al.  The mutY gene: a mutator locus in Escherichia coli that generates G.C----T.A transversions. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[50]  M. Dizdaroglu,et al.  A novel activity of E. coli uracil DNA N‐glycosylase excision of isodialuric acid (5,6‐dihydroxyuracil), a major product of oxidative DNA damage, from DNA , 1995, FEBS letters.

[51]  R. Schaaper,et al.  Spontaneous mutation in the Escherichia coli lacI gene. , 1991, Genetics.

[52]  B. Halliwell,et al.  Nickel(II)- and cobalt(II)-dependent damage by hydrogen peroxide to the DNA bases in isolated human chromatin. , 1991, Cancer research.

[53]  M L Michaels,et al.  The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine) , 1992, Journal of bacteriology.

[54]  S. Farr,et al.  Oxidative stress responses in Escherichia coli and Salmonella typhimurium. , 1991, Microbiological reviews.

[55]  C. Sonntag,et al.  The chemical basis of radiation biology , 1987 .

[56]  J. T. Reardon,et al.  In vitro repair of oxidative DNA damage by human nucleotide excision repair system: possible explanation for neurodegeneration in xeroderma pigmentosum patients. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[57]  S. Wallace Oxidative Damage to DNA and Its Repair , 1997 .

[58]  H. Kamiya,et al.  Substitution and deletion mutations induced by 2-hydroxyadenine in Escherichia coli: effects of sequence contexts in leading and lagging strands. , 1997, Nucleic acids research.

[59]  R. Barbey,et al.  Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[60]  H. Tanooka,et al.  5-Formyldeoxyuridine: a new type of DNA damage induced by ionizing radiation and its mutagenicity to salmonella strain TA102. , 1990, Mutation research.

[61]  L. Loeb,et al.  8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G----T and A----C substitutions. , 1992, The Journal of biological chemistry.

[62]  S. Wallace,et al.  Characterization of Escherichia coli Endonuclease VIII* , 1997, The Journal of Biological Chemistry.

[63]  J. Clark,et al.  Template length, sequence context, and 3'-5' exonuclease activity modulate replicative bypass of thymine glycol lesions in vitro. , 1989, Biochemistry.

[64]  H. Kamiya,et al.  Formation of 2-Hydroxydeoxyadenosine Triphosphate, an Oxidatively Damaged Nucleotide, and Its Incorporation by DNA Polymerases , 1995, The Journal of Biological Chemistry.

[65]  C. Yanofsky,et al.  The unusual mutagenic specificity of an E. Coli mutator gene. , 1966, Proceedings of the National Academy of Sciences of the United States of America.

[66]  Steven A. Benner,et al.  Enzymatic incorporation of a new base pair into DNA and RNA , 1989 .

[67]  L. Samson,et al.  Base excision repair deficient mice lacking the Aag alkyladenine DNA glycosylase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[68]  J. Cadet,et al.  Quantitative measurement of the diastereoisomers of cis thymidine glycol in gamma-irradiated DNA. , 1987, Free radical research communications.

[69]  S. Wallace,et al.  5-Hydroxypyrimidine deoxynucleoside triphosphates are more efficiently incorporated into DNA by exonuclease-free Klenow fragment than 8-oxopurine deoxynucleoside triphosphates. , 1994, Nucleic acids research.

[70]  E. Gajewski,et al.  Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization. , 1992, Biochemistry.

[71]  B. Blount,et al.  Excision of oxidative cytosine modifications from gamma-irradiated DNA by Escherichia coli endonuclease III and human whole-cell extracts. , 1996, Analytical Biochemistry.

[72]  J. Miller,et al.  Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage , 1996, Journal of bacteriology.

[73]  M. Moriya Single-stranded shuttle phagemid for mutagenesis studies in mammalian cells: 8-oxoguanine in DNA induces targeted G.C-->T.A transversions in simian kidney cells. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[74]  S. V. Gupta,et al.  Comparison of the mutagenic activity of 5-hydroxymethyldeoxyuridine with 5-substituted 2'-deoxyuridine analogs in the Ames Salmonella/microsome test. , 1986, Mutation research.

[75]  A. Ootsuyama,et al.  Formation of 8-hydroxyguanine moiety in cellular DNA by agents producing oxygen radicals and evidence for its repair. , 1986, Carcinogenesis.

[76]  E. Seeberg,et al.  DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the AlkA enzyme in Escherichia coli. , 1994, The Journal of biological chemistry.

[77]  A. Barton,et al.  Purification, characterization, gene cloning, and expression of Saccharomyces cerevisiae redoxyendonuclease, a homolog of Escherichia coli endonuclease III. , 1997, Biochemistry.

[78]  M. Yoshida,et al.  Substrate and mispairing properties of 5-formyl-2'-deoxyuridine 5'-triphosphate assessed by in vitro DNA polymerase reactions. , 1997, Nucleic acids research.

[79]  J. Essigmann,et al.  Genetic effects of oxidative DNA damage: comparative mutagenesis of 7,8-dihydro-8-oxoguanine and 7,8-dihydro-8-oxoadenine in Escherichia coli. , 1992, Nucleic acids research.

[80]  J. Yokota,et al.  Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage , 1997, Oncogene.

[81]  T. Lindahl,et al.  DNA glycosylase activities for thymine residues damaged by ring saturation, fragmentation, or ring contraction are functions of endonuclease III in Escherichia coli. , 1984, The Journal of biological chemistry.

[82]  S. J. Culp,et al.  Structural and conformational analyses of 8-hydroxy-2'-deoxyguanosine. , 1989, Chemical research in toxicology.

[83]  O. Aruoma,et al.  Iron ion-dependent modification of bases in DNA by the superoxide radical-generating system hypoxanthine/xanthine oxidase. , 1989, The Journal of biological chemistry.

[84]  L. Sowers,et al.  Synthesis and cleavage of oligodeoxynucleotides containing a 5-hydroxyuracil residue at a defined site. , 1997, Chemical research in toxicology.

[85]  M. Dizdaroglu,et al.  Substrate specificity of the Escherichia coli endonuclease III: excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals. , 1993, Biochemistry.

[86]  J. Skokowski,et al.  DNA base modifications in chromatin of human cancerous tissues , 1992, FEBS letters.

[87]  L. Loeb,et al.  Mutagenic spectrum resulting from DNA damage by oxygen radicals. , 1991, Biochemistry.

[88]  S. Wallace,et al.  Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants , 1997, Journal of bacteriology.

[89]  A. Yacoub,et al.  The Drosophila Ribosomal Protein S3 Contains a DNA Deoxyribophosphodiesterase (dRpase) Activity* , 1997, The Journal of Biological Chemistry.

[90]  S. Wallace,et al.  Isolation and characterization of endonuclease VIII from Escherichia coli. , 1994, Biochemistry.

[91]  P. Bolton,et al.  Structure of a Duplex DNA Containing a Thymine Glycol Residue in Solution* , 1997, The Journal of Biological Chemistry.

[92]  D. A. Kreutzer,et al.  Oxidized, deaminated cytosines are a source of C --> T transitions in vivo. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[93]  L. A. Lipscomb,et al.  X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[94]  T. Rossman,et al.  Genetic effects of 5-hydroxymethyl-2'-deoxyuridine, a product of ionizing radiation. , 1987, Mutation research.

[95]  G. Verdine,et al.  A mammalian DNA repair enzyme that excises oxidatively damaged guanines maps to a locus frequently lost in lung cancer , 1997, Current Biology.

[96]  G. A. van der Marel,et al.  Repair and replication of plasmids with site-specific 8-oxodG and 8-AAFdG residues in normal and repair-deficient human cells. , 1992, Nucleic acids research.

[97]  J. Cadet,et al.  Measurement of oxidative damage at pyrimidine bases in gamma-irradiated DNA. , 1996, Chemical research in toxicology.

[98]  G. A. van der Marel,et al.  Use of shuttle vectors to study the molecular processing of defined carcinogen-induced DNA damage: mutagenicity of single O4-ethylthymine adducts in HeLa cells. , 1990, Nucleic acids research.

[99]  B. Halliwell,et al.  Free radicals in biology and medicine , 1985 .

[100]  B. Ames,et al.  Oxidative damage to DNA during aging: 8-hydroxy-2'-deoxyguanosine in rat organ DNA and urine. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[101]  J. Essigmann,et al.  Site-specific mutagenesis: retrospective and prospective. , 1991, Carcinogenesis.

[102]  J. Miller,et al.  mutM, a second mutator locus in Escherichia coli that generates G.C----T.A transversions , 1988, Journal of bacteriology.

[103]  J. Essigmann,et al.  Genetic effects of thymine glycol: site-specific mutagenesis and molecular modeling studies. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[104]  H. Maki,et al.  Cloning and expression of cDNA for a human enzyme that hydrolyzes 8-oxo-dGTP, a mutagenic substrate for DNA synthesis. , 1993, The Journal of biological chemistry.

[105]  J. Essigmann,et al.  Possible role for thymine glycol in the selective inhibition of DNA synthesis on oxidized DNA templates. , 1985, Cancer research.

[106]  E. Seeberg,et al.  Base excision of oxidative purine and pyrimidine DNA damage in Saccharomyces cerevisiae by a DNA glycosylase with sequence similarity to endonuclease III from Escherichia coli. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[107]  H. Hayatsu,et al.  Spectra of superoxide-induced mutations in the lacI gene of a wild-type and a mutM strain of Escherichia coli K-12. , 1995, Mutation research.

[108]  S. Tannenbaum,et al.  Analysis of methylated and oxidized purines in urine by capillary gas chromatography-mass spectrometry. , 1989, Chemical research in toxicology.

[109]  D. Patel,et al.  NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site. , 1991, Biochemistry.

[110]  R. Tyrrell,et al.  Mutagenesis by hydrogen peroxide treatment of mammalian cells: a molecular analysis. , 1990, Carcinogenesis.

[111]  B. Van Houten,et al.  UvrABC nuclease complex repairs thymine glycol, an oxidative DNA base damage. , 1990, Mutation research.

[112]  H. C. Yeo,et al.  DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[113]  L. Loeb,et al.  Mutation spectrum of copper-induced DNA damage. , 1991, The Journal of biological chemistry.

[114]  H. Krokan,et al.  DNA glycosylases in the base excision repair of DNA. , 1997, The Biochemical journal.

[115]  H. Maki,et al.  MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis , 1992, Nature.

[116]  K. Rietveld,et al.  Gamma-ray induced mutational spectrum in the lacI gene of Escherichia coli: comparison of induced vs. spontaneous spectra at the molecular level , 1980 .

[117]  S. Wallace,et al.  Thymine glycols and urea residues in M13 DNA constitute replicative blocks in vitro. , 1985, Nucleic acids research.

[118]  G. Fazakerley,et al.  Structures of base pairs with 5-(hydroxymethyl)-2'-deoxyuridine in DNA determined by NMR spectroscopy. , 1993, Biochemistry.

[119]  J. Miller,et al.  Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[120]  E. Ohtsuka,et al.  NMR studies of a DNA containing 8-hydroxydeoxyguanosine. , 1991, Nucleic acids research.

[121]  C. Desmaze,et al.  Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[122]  S. Linn,et al.  Formation, Prevention, and Repair of DNA Damage by Iron/Hydrogen Peroxide* , 1997, The Journal of Biological Chemistry.

[123]  M. Augustus,et al.  Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[124]  M. Dizdaroglu,et al.  Novel activities of human uracil DNA N-glycosylase for cytosine-derived products of oxidative DNA damage. , 1996, Nucleic acids research.

[125]  E. Ohtsuka,et al.  c-Ha-ras containing 8-hydroxyguanine at codon 12 induces point mutations at the modified and adjacent positions. , 1992, Cancer research.

[126]  G. Teebor,et al.  Identification of the cis-thymine glycol moiety in oxidized deoxyribonucleic acid. , 1981, Biochemistry.

[127]  S. Nakajima,et al.  Characterization of endonuclease III (nth) and endonuclease VIII (nei) mutants of Escherichia coli K-12 , 1997, Journal of bacteriology.

[128]  L. Sowers,et al.  A proposed mechanism for the mutagenicity of 5-formyluracil. , 1996, Mutation research.

[129]  H. Ayaki,et al.  Specificity of ionizing radiation-induced mutagenesis in the lac region of single-stranded phage M13 mp10 DNA. , 1986, Nucleic acids research.

[130]  R. Barbey,et al.  Inactivation of OGG1 increases the incidence of G · C→T · A transversions in Saccharomyces cerevisiae : evidence for endogenous oxidative damage to DNA in eukaryotic cells , 1997, Molecular and General Genetics MGG.

[131]  J. J. Steinberg,et al.  Quantitative determination of the 5-(hydroxymethyl)uracil moiety in the DNA of gamma-irradiated cells. , 1985, Biochemistry.

[132]  Gregory L. Verdine,et al.  Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily , 1996, Current Biology.

[133]  M. Aida,et al.  An ab initio molecular orbital study on the characteristics of 8-hydroxyguanine. , 1987, Mutation research.

[134]  B. Pullman,et al.  On the conformational dependence of the proton chemical shifts in nucleosides and nucleotides. II. Proton shifts in the ribose ring of purine nucleosides as a function of the torsion angle about the glycosyl bond. , 1977, Journal of theoretical biology.

[135]  E. Gajewski,et al.  Modification of DNA bases in mammalian chromatin by radiation-generated free radicals. , 1990, Biochemistry.

[136]  F. Hanaoka,et al.  8-Hydroxyadenine (7,8-dihydro-8-oxoadenine) induces misincorporation in in vitro DNA synthesis and mutations in NIH 3T3 cells. , 1995, Nucleic acids research.

[137]  M. Ikehara,et al.  Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides. Characteristic shifts for the syn conformation. , 1977, Journal of the American Chemical Society.

[138]  Susan S. Wallace,et al.  Major oxidative products of cytosine, 5-hydroxycytosine and 5- hydroxyuracil, exhibit sequence context-dependent mispairing in vitro , 1994, Nucleic Acids Res..

[139]  S. J. Culp,et al.  Nitrogen-15 nuclear magnetic resonance studies on the tautomerism of 8-hydroxy-2'-deoxyguanosine, 8-hydroxyguanosine, and other C8-substituted guanine nucleosides , 1990 .

[140]  R. Teoule,et al.  Structure and in vitro replication of DNA templates containing 7,8-dihydro-8-oxoadenine. , 1991, Nucleic acids research.

[141]  H. Kasai,et al.  Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues , 1987, Nature.

[142]  J. Essigmann,et al.  Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome. , 1990, Biochemistry.

[143]  L. Loeb,et al.  Reverse chemical mutagenesis: identification of the mutagenic lesions resulting from reactive oxygen species-mediated damage to DNA. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[144]  J. E. Leclerc,et al.  Sequence dependence for bypass of thymine glycols in DNA by DNA polymerase I. , 1986, Nucleic acids research.

[145]  A. Grollman,et al.  Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG , 1991, Nature.

[146]  D. C. Malins,et al.  4,6-Diamino-5-formamidopyrimidine, 8-hydroxyguanine and 8-hydroxyadenine in DNA from neoplastic liver of English sole exposed to carcinogens. , 1990, Biochemical and biophysical research communications.

[147]  J. Miller,et al.  A repair system for 8-oxo-7,8-dihydrodeoxyguanine. , 1992, Biochemistry.

[148]  A. Grollman,et al.  Translesional synthesis on DNA templates containing 8-oxo-7,8-dihydrodeoxyadenosine. , 1993, Biochemistry.

[149]  K. Frenkel,et al.  Effect of metals on nucleoside hydroperoxide, a product of ionizing radiation in DNA. , 1989, Free radical biology & medicine.

[150]  B. Cho,et al.  Structure of oxidatively damaged nucleic acid adducts. 3. Tautomerism, ionization and protonation of 8-hydroxyadenosine studied by 15N NMR spectroscopy. , 1991, Nucleic acids research.

[151]  A. Sancar,et al.  A new mechanism for repairing oxidative damage to DNA: (A)BC excinuclease removes AP sites and thymine glycols from DNA. , 1989, Biochemistry.

[152]  G. Margison,et al.  Targeted deletion of alkylpurine-DNA-N-glycosylase in mice eliminates repair of 1,N6-ethenoadenine and hypoxanthine but not of 3,N4-ethenocytosine or 8-oxoguanine. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[153]  T. Kunkel,et al.  DNA replication fidelity with 8-oxodeoxyguanosine triphosphate. , 1994, Biochemistry.

[154]  R. Teoule,et al.  Thymine fragment damage retained in the DNA polynucleotide chain after gamma irradiation in aerated solutions. II. , 1977, Radiation research.

[155]  T. Lindahl,et al.  Thymine lesions produced by ionizing radiation in double-stranded DNA. , 1985, Biochemistry.

[156]  T. Tsuzuki,et al.  Mouse MTH1 Protein with 8-Oxo-7,8-dihydro-2′-deoxyguanosine 5′-Triphosphatase Activity That Prevents Transversion Mutation , 1995, The Journal of Biological Chemistry.

[157]  J. Cadet,et al.  Artifacts associated with the measurement of oxidized DNA bases. , 1997 .

[158]  S. Nishimura,et al.  Hydroxylation of deoxy guanosine at the C-8 position by polyphenols and aminophenols in the presence of hydrogen peroxide and ferric ion. , 1984, Gan.