Natural products as starting points for the synthesis of complex and diverse compounds.

Covering: up to 2013. Natural products and their derivatives are used as treatments for numerous diseases. Many of these compounds are structurally complex, possessing a high percentage of sp(3) hybridized carbons and multiple stereogenic centers. Due to the difficulties associated with the isolation of large numbers of novel natural products, lead discovery efforts over the last two decades have shifted toward the screening of less structurally complex synthetic compounds. While there have been many success stories from these campaigns, the modulation of certain biological targets (e.g. protein-protein interactions) and disease areas (e.g. antibacterials) often require complex molecules. Thus, there is considerable interest in the development of strategies to construct large collections of compounds that mimic the complexity of natural products. Several of these strategies focus on the conversion of simple starting materials to value-added products and have been reviewed elsewhere. Herein we review the use of natural products as starting points for the generation of complex compounds, discussing both early ad hoc efforts and a more recent systematization of this approach.

[1]  C. Song Cinchona Alkaloids in Synthesis and Catalysis , 2009 .

[2]  H. Nagase,et al.  Synthesis of novel basic skeletons derived from naltrexone. , 2011, Topics in current chemistry.

[3]  Stuart L Schreiber,et al.  A synthesis strategy yielding skeletally diverse small molecules combinatorially. , 2004, Journal of the American Chemical Society.

[4]  Jie Liang,et al.  Creation and manipulation of common functional groups en route to a skeletally diverse chemical library , 2011, Proceedings of the National Academy of Sciences.

[5]  T. Okamoto,et al.  The chemistry of zerumbone. Part 5: Structural transformation of the dimethylamine derivatives , 2003 .

[6]  R. Utsumi,et al.  Unprecedented olefin-dependent histidine-kinase inhibitory of zerumbone ring-opening material. , 2004, Bioorganic & medicinal chemistry letters.

[7]  Stuart L. Schreiber,et al.  Small molecules of different origins have distinct distributions of structural complexity that correlate with protein-binding profiles , 2010, Proceedings of the National Academy of Sciences.

[8]  J. Letterio,et al.  Bryonolic acid: a large-scale isolation and evaluation of heme oxygenase 1 expression in activated macrophages. , 2010, Journal of Natural Products.

[9]  David J Newman,et al.  Natural products as sources of new drugs over the 30 years from 1981 to 2010. , 2012, Journal of natural products.

[10]  G. Appendino,et al.  Unnatural natural products from the transannular cyclization of lathyrane diterpenes. , 2001, Organic letters.

[11]  M. Sierra,et al.  Diversity oriented synthesis of hispanane-like terpene derivatives from (R)-(+)-sclareolide. , 2005, Chemistry.

[12]  Y. Feng,et al.  Use of biomimetic diversity-oriented synthesis to discover galanthamine-like molecules with biological properties beyond those of the natural product. , 2001, Journal of the American Chemical Society.

[13]  P. Bartlett,et al.  Synthetic strategies in combinatorial chemistry. , 1997, Current opinion in chemical biology.

[14]  R. H. Baltz Renaissance in antibacterial discovery from actinomycetes. , 2008, Current opinion in pharmacology.

[15]  S. Macdonald,et al.  Factors Determining the Selection of Organic Reactions by Medicinal Chemists and the Use of These Reactions in Arrays (Small Focused Libraries) , 2011 .

[16]  H. Nagase,et al.  Novel rearrangement reaction of a 6,14-endoethanomorphinan derivative to a benzomorphan derivative , 2009 .

[17]  S. Schreiber,et al.  Target-oriented and diversity-oriented organic synthesis in drug discovery. , 2000, Science.

[18]  Jeremy R. Duvall,et al.  Discovery of Small-Molecule Modulators of the Sonic Hedgehog Pathway , 2013, Journal of the American Chemical Society.

[19]  Matthew E Welsch,et al.  Privileged scaffolds for library design and drug discovery. , 2010, Current opinion in chemical biology.

[20]  J. Vederas,et al.  Drug Discovery and Natural Products: End of an Era or an Endless Frontier? , 2009, Science.

[21]  R. Hicklin,et al.  A ring-distortion strategy to construct stereochemically complex and structurally diverse compounds from natural products. , 2013, Nature chemistry.

[22]  T. Kirchhausen,et al.  Synthesis of a 10,000-membered library of molecules resembling carpanone and discovery of vesicular traffic inhibitors. , 2006, Journal of the American Chemical Society.

[23]  David R. Spring,et al.  Diversity-Oriented Synthesis: Producing Chemical Tools for Dissecting Biology , 2012 .

[24]  M. Narita,et al.  Drug design and synthesis of epsilon opioid receptor agonist: 17-(cyclopropylmethyl)-4,5alpha-epoxy-3,6beta-dihydroxy-6,14-endoethenomorphinan-7alpha-(N-methyl-N-phenethyl)carboxamide (TAN-821) inducing antinociception mediated by putative epsilon opioid receptor. , 2004, Bioorganic & medicinal chemistry.

[25]  Andrew R. Leach,et al.  Molecular Complexity and Its Impact on the Probability of Finding Leads for Drug Discovery , 2001, J. Chem. Inf. Comput. Sci..

[26]  David R Spring,et al.  Diversity-oriented synthesis: producing chemical tools for dissecting biology. , 2012, Chemical Society reviews.

[27]  A. D. Cross,et al.  The Chemistry of Fumagillin1 , 1961 .

[28]  T. Okamoto,et al.  Chemistry of Zerumbone. 1. Simplified Isolation, Conjugate Addition Reactions, and a Unique Ring Contracting Transannular Reaction of Its Dibromide. , 1999, The Journal of organic chemistry.

[29]  Warren R. J. D. Galloway,et al.  Diversity‐Oriented Synthesis as a Tool for the Discovery of Novel Biologically Active Small Molecules , 2011 .

[30]  Gregory P. Tochtrop,et al.  Approach for expanding triterpenoid complexity via divergent Norrish-Yang photocyclization. , 2013, The Journal of organic chemistry.

[31]  Paul A. Wender,et al.  Function‐Oriented Synthesis, Step Economy, and Drug Design , 2008 .

[32]  Anang A Shelat,et al.  Scaffold composition and biological relevance of screening libraries. , 2007, Nature chemical biology.

[33]  Derek S. Tan,et al.  Diversity-oriented synthesis: exploring the intersections between chemistry and biology , 2005, Nature chemical biology.

[34]  Aaron B. Beeler,et al.  Remodeling of the Natural Product Fumagillol Employing a Reaction Discovery Approach , 2011, Nature Chemistry.

[35]  M. C. de la Torre,et al.  Photochemical access to tetra- and pentacyclic terpene-like products from R-(+)-sclareolide. , 2003, The Journal of organic chemistry.

[36]  David R Spring,et al.  Diversity-oriented synthesis as a tool for the discovery of novel biologically active small molecules. , 2010, Nature communications.

[37]  Stefan Wetzel,et al.  Charting, navigating, and populating natural product chemical space for drug discovery. , 2012, Journal of medicinal chemistry.

[38]  Gregory P. Tochtrop,et al.  Molecular library synthesis using complex substrates: expanding the framework of triterpenoids. , 2013, The Journal of organic chemistry.

[39]  H. Nagase,et al.  Investigation of Beckett-Casy model 1: synthesis of novel 16,17-seco-naltrexone derivatives and their pharmacology. , 2010, Bioorganic & medicinal chemistry letters.

[40]  Palmisano,et al.  An expeditious procedure for the isolation of ingenol from the seeds of euphorbia lathyris , 1999, Journal of natural products.

[41]  B A Pfeifer,et al.  Biosynthesis of Complex Polyketides in a Metabolically Engineered Strain of E. coli , 2001, Science.

[42]  Paul A Wender,et al.  Function-oriented synthesis, step economy, and drug design. , 2008, Accounts of chemical research.

[43]  C. Soccol,et al.  New perspectives of gibberellic acid production: a review , 2012, Critical reviews in biotechnology.

[44]  Stefan Wetzel,et al.  Biology-oriented synthesis. , 2011, Angewandte Chemie.

[45]  Oliver E. Hutt,et al.  Synthesis of skeletally diverse and stereochemically complex library templates derived from isosteviol and steviol. , 2013, Organic letters.

[46]  Jérôme Hert,et al.  Quantifying Biogenic Bias in Screening Libraries , 2009, Nature chemical biology.

[47]  T. Kitayama Attractive Reactivity of a Natural Product, Zerumbone , 2011, Bioscience, biotechnology, and biochemistry.