Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.
暂无分享,去创建一个
G. Crawford | Lingyun Song | A. Safi | Jianhong Ou | Joseph J Balowski | K. Poss | Jingli Cao | Yu Xia | Yingxi Cao | Timothy Curtis | Alexias Safi
[1] M. Goumans,et al. Prrx1b restricts fibrosis and promotes Nrg1-dependent cardiomyocyte proliferation during zebrafish heart regeneration , 2021, Development.
[2] D. Stainier,et al. Conserved and context-dependent roles for pdgfrb signaling during zebrafish vascular mural cell development. , 2021, Developmental biology.
[3] T. Sauka-Spengler,et al. Distinct epicardial gene regulatory programmes drive development and regeneration of the zebrafish heart , 2021, bioRxiv.
[4] Weiqiang Huang,et al. Cellular Senescence Affects Cardiac Regeneration and Repair in Ischemic Heart Disease , 2021, Aging and disease.
[5] J. Söding,et al. Evidence for additive and synergistic action of mammalian enhancers during cell fate determination , 2021, eLife.
[6] P. Maness,et al. Molecular Mechanisms of L1 and NCAM Adhesion Molecules in Synaptic Pruning, Plasticity, and Stabilization , 2021, Frontiers in Cell and Developmental Biology.
[7] Zeba Wunderlich,et al. Enhancer redundancy in development and disease , 2021, Nature Reviews Genetics.
[8] K. Poss,et al. Regulation of zebrafish fin regeneration by vitamin D signaling , 2020, Developmental dynamics : an official publication of the American Association of Anatomists.
[9] Sofia M. C. Robb,et al. Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates , 2020, Science.
[10] Shao-yi Lin,et al. The Role of Transcription Factor 21 in Epicardial Cell Differentiation and the Development of Coronary Heart Disease , 2020, Frontiers in Cell and Developmental Biology.
[11] D. Stainier,et al. AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration , 2020, Circulation research.
[12] Stephen L. Johnson,et al. Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility , 2020, Genome Biology.
[13] F. Pelegri,et al. Decoding an Organ Regeneration Switch by Dissecting Cardiac Regeneration Enhancers. , 2020, Development.
[14] G. Crawford,et al. Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration. , 2020, Development.
[15] B. Göttgens,et al. Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration , 2019, Development.
[16] Zsuzsa Ákos,et al. Coacting enhancers can have complementary functions within gene regulatory networks and promote canalization , 2019, PLoS genetics.
[17] D. Stainier,et al. Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. , 2019, Developmental cell.
[18] Matthew C. Hill,et al. Conserved NPPB+ Border Zone Switches from MEF2 to AP-1 Driven Gene Program. , 2019, Circulation.
[19] Husen M. Umer,et al. funMotifs: Tissue-specific transcription factor motifs , 2019, bioRxiv.
[20] L. Zhu,et al. trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data , 2019, Nature Methods.
[21] Bin Zhou,et al. CCN1-Induced Cellular Senescence Promotes Heart Regeneration. , 2019, Circulation.
[22] R. Sarig,et al. Transient p53-Mediated Regenerative Senescence in the Injured Heart. , 2019, Circulation.
[23] Monte Westerfield,et al. The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources , 2018, Nucleic Acids Res..
[24] Rocío Nieto-Arellano,et al. zfRegeneration: a database for gene expression profiling during regeneration , 2018, Bioinform..
[25] R. Guigó,et al. Damage-responsive elements in Drosophila regeneration , 2018, Genome research.
[26] T. Sauka-Spengler,et al. Functional Heterogeneity within the Developing Zebrafish Epicardium , 2018, bioRxiv.
[27] Ravi Karra,et al. Vegfaa instructs cardiac muscle hyperplasia in adult zebrafish , 2018, Proceedings of the National Academy of Sciences.
[28] K. Poss,et al. The epicardium as a hub for heart regeneration , 2018, Nature Reviews Cardiology.
[29] Joshua D. Wythe,et al. Hippo Signaling Plays an Essential Role in Cell State Transitions during Cardiac Fibroblast Development. , 2018, Developmental cell.
[30] R. Rojas-García,et al. Antibodies against cell adhesion molecules and neural structures in paraneoplastic neuropathies , 2018, Annals of clinical and translational neurology.
[31] Johannes Stegmaier,et al. Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust , 2018, Development.
[32] Tyler H. Garvin,et al. Ultraconserved Enhancers Are Required for Normal Development , 2018, Cell.
[33] Tyler H. Garvin,et al. Enhancer Redundancy Allows for Phenotypic Robustness in Mammalian Development , 2017, Nature.
[34] Shinichi Nakagawa,et al. Zebrafish Regulatory T Cells Mediate Organ-Specific Regenerative Programs. , 2017, Developmental cell.
[35] N. Bursac,et al. Tension Creates an Endoreplication Wavefront that Leads Regeneration of Epicardial Tissue. , 2017, Developmental cell.
[36] A. Jaźwińska,et al. The careg element reveals a common regulation of regeneration in the zebrafish myocardium and fin , 2017, Nature Communications.
[37] S. Hui,et al. Author response: Dissection of zebrafish shha function using site-specific targeting with a Cre-dependent genetic switch , 2017 .
[38] M. Tolstorukov,et al. Resolving Heart Regeneration by Replacement Histone Profiling. , 2017, Developmental cell.
[39] Baoxue Yang,et al. Repulsive guidance molecule b inhibits renal cyst development through the bone morphogenetic protein signaling pathway. , 2016, Cellular signalling.
[40] R. Dey,et al. Regulation, Signaling, and Physiological Functions of G-Proteins. , 2016, Journal of molecular biology.
[41] Roland Eils,et al. Complex heatmaps reveal patterns and correlations in multidimensional genomic data , 2016, Bioinform..
[42] Junsu Kang,et al. Modulation of tissue repair by regeneration enhancer elements , 2016, Nature.
[43] I. Hariharan,et al. Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs , 2016, eLife.
[44] Ravi Karra,et al. Single epicardial cell transcriptome sequencing identifies Caveolin 1 as an essential factor in zebrafish heart regeneration , 2016, Development.
[45] Alexander van Oudenaarden,et al. Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration. , 2016, Developmental cell.
[46] Bin Zhou,et al. Epicardial FSTL1 reconstitution regenerates the adult mammalian heart , 2015, Nature.
[47] Jinhu Wang,et al. Epicardial regeneration is guided by cardiac outflow tract and Hh signaling , 2015, Nature.
[48] Ravi Karra,et al. Author response: Nrg1 is an injury-induced cardiomyocyte mitogen for the endogenous heart regeneration program in zebrafish , 2015 .
[49] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[50] P. Riley,et al. The epicardium signals the way towards heart regeneration , 2014, Stem cell research.
[51] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[52] D. Graves,et al. FOXO Transcription Factors: Their Clinical Significance and Regulation , 2014, BioMed research international.
[53] M. Holtz,et al. Epicardial GATA factors regulate early coronary vascular plexus formation. , 2014, Developmental biology.
[54] R. Young,et al. Super-Enhancers in the Control of Cell Identity and Disease , 2013, Cell.
[55] Ravi Karra,et al. Fibronectin is deposited by injury-activated epicardial cells and is necessary for zebrafish heart regeneration. , 2013, Developmental biology.
[56] Howard Y. Chang,et al. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position , 2013, Nature Methods.
[57] Michael Hiller,et al. Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish , 2013, Nucleic acids research.
[58] G. Bejerano,et al. Enhancers: five essential questions , 2013, Nature Reviews Genetics.
[59] J. Holdway,et al. In vivo monitoring of cardiomyocyte proliferation to identify chemical modifiers of heart regeneration , 2013, Development.
[60] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[61] Jeffrey E. Thatcher,et al. C/EBP Transcription Factors Mediate Epicardial Activation During Heart Development and Injury , 2012, Science.
[62] N. Mercader,et al. Pan-epicardial lineage tracing reveals that epicardium derived cells give rise to myofibroblasts and perivascular cells during zebrafish heart regeneration. , 2012, Developmental biology.
[63] A. Jaźwińska,et al. The regenerative capacity of the zebrafish heart is dependent on TGFβ signaling , 2012, Development.
[64] I. Ellis,et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer , 2011, Nature.
[65] A. Werdich,et al. The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion , 2011, Development.
[66] Haojie Huang,et al. FOXO1: a potential target for human diseases. , 2011, Current drug targets.
[67] J. Holdway,et al. Development and Stem Cells Research Article , 2022 .
[68] J. Holdway,et al. Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. , 2011, Developmental cell.
[69] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[70] David S. Lapointe,et al. ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data , 2010, BMC Bioinformatics.
[71] R. Köster,et al. In vivo synthesis of meganuclease for generating transgenic zebrafish Danio rerio. , 2009, Journal of Fish Biology.
[72] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[73] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[74] Alex Bateman,et al. Large-scale screening for novel low-affinity extracellular protein interactions. , 2008, Genome research.
[75] R. Roberts,et al. A Dynamic Epicardial Injury Response Supports Progenitor Cell Activity during Zebrafish Heart Regeneration , 2006, Cell.
[76] A. Brivanlou,et al. DRAGON, a Bone Morphogenetic Protein Co-receptor* , 2005, Journal of Biological Chemistry.
[77] M. Keating,et al. Heart Regeneration in Zebrafish , 2002, Science.
[78] D. Accili,et al. The forkhead transcription factor Foxo1 (Fkhr) confers insulin sensitivity onto glucose-6-phosphatase expression. , 2001, The Journal of clinical investigation.
[79] S. Pinaud,et al. RNA polymerase II promoter-proximal pausing upregulates c-fos gene expression. , 2000, Gene.