Cytomegalovirus infection disrupts the influence of short-chain fatty acid producers on Treg/Th17 balance

[1]  C. Brander,et al.  Cytomegalovirus mediates expansion of IL-15-responsive innate-memory cells with SIV killing function. , 2021, The Journal of clinical investigation.

[2]  A. Villringer,et al.  Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior , 2021, Translational Psychiatry.

[3]  Xiaoying Shen,et al.  RhCMV serostatus and vaccine adjuvant impact immunogenicity of RhCMV/SIV vaccines , 2020, Scientific Reports.

[4]  K. Śliżewska,et al.  The Effect of Probiotics on the Production of Short-Chain Fatty Acids by Human Intestinal Microbiome , 2020, Nutrients.

[5]  Wen-Tao Ma,et al.  The Commensal Microbiota and Viral Infection: A Comprehensive Review , 2019, Front. Immunol..

[6]  Y. Mao-Draayer,et al.  Bidirectional regulatory potentials of short-chain fatty acids and their G-protein-coupled receptors in autoimmune neuroinflammation , 2019, Scientific Reports.

[7]  X. Zhang,et al.  Statistical evaluation of diet-microbe associations , 2019, BMC Microbiology.

[8]  P. Griffiths,et al.  Estimation of the worldwide seroprevalence of cytomegalovirus: A systematic review and meta‐analysis , 2019, Reviews in medical virology.

[9]  David J. Klinke,et al.  An elastic-net logistic regression approach to generate classifiers and gene signatures for types of immune cells and T helper cell subsets , 2019, BMC Bioinformatics.

[10]  P. Pandiyan,et al.  Microbiome Dependent Regulation of Tregs and Th17 Cells in Mucosa , 2019, Front. Immunol..

[11]  T. Schmidt,et al.  Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers , 2018, mBio.

[12]  J. Garssen,et al.  Pro‐ and anti‐inflammatory effects of short chain fatty acids on immune and endothelial cells , 2018, European journal of pharmacology.

[13]  N. Curtis,et al.  The influence of the intestinal microbiome on vaccine responses. , 2018, Vaccine.

[14]  G. Jiang,et al.  Subclinical Cytomegalovirus Infection Is Associated with Altered Host Immunity, Gut Microbiota, and Vaccine Responses , 2018, Journal of Virology.

[15]  S. de Saeger,et al.  Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition , 2018, Scientific Reports.

[16]  M. Veldhoen,et al.  Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases , 2018, Nature Communications.

[17]  Jean M. Macklaim,et al.  Microbiome Datasets Are Compositional: And This Is Not Optional , 2017, Front. Microbiol..

[18]  P. Barry,et al.  Rhesus monkeys for a nonhuman primate model of cytomegalovirus infections. , 2017, Current opinion in virology.

[19]  Maha Almanan,et al.  Tissue-specific control of latent CMV reactivation by regulatory T cells , 2017, PLoS pathogens.

[20]  L. Picker,et al.  CD8+ T cell programming by cytomegalovirus vectors: applications in prophylactic and therapeutic vaccination. , 2017, Current opinion in immunology.

[21]  A. Keshavarzian,et al.  Effect of cytomegalovirus and Epstein-Barr virus replication on intestinal mucosal gene expression and microbiome composition of HIV-infected and uninfected individuals. , 2017, AIDS.

[22]  M. Wills,et al.  LPS promotes a monocyte phenotype permissive for human cytomegalovirus immediate-early gene expression upon infection but not reactivation from latency , 2017, Scientific Reports.

[23]  A. Weljie,et al.  ACSS2-mediated acetyl-CoA synthesis from acetate is necessary for human cytomegalovirus infection , 2017, Proceedings of the National Academy of Sciences.

[24]  Eric A. Franzosa,et al.  Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity , 2016, Cell.

[25]  D. Antonopoulos,et al.  Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis , 2016, The ISME Journal.

[26]  Cheng-gong Yu,et al.  Faecalibacterium prausnitzii supernatant ameliorates dextran sulfate sodium induced colitis by regulating Th17 cell differentiation. , 2016, World journal of gastroenterology.

[27]  F. Bäckhed,et al.  From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites , 2016, Cell.

[28]  Matheus C. Bürger,et al.  Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response. , 2016, Cell host & microbe.

[29]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[30]  M. Reeves,et al.  Cytomegalovirus latency and reactivation: recent insights into an age old problem , 2016, Reviews in medical virology.

[31]  A. Margolles,et al.  Intestinal Short Chain Fatty Acids and their Link with Diet and Human Health , 2016, Front. Microbiol..

[32]  Makoto Fujii,et al.  Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease , 2016, Digestion.

[33]  Sara Omenetti,et al.  The Treg/Th17 Axis: A Dynamic Balance Regulated by the Gut Microbiome , 2015, Front. Immunol..

[34]  D. Lu,et al.  Persistent effects of early infant diet and associated microbiota on the juvenile immune system , 2015, Gut microbes.

[35]  M. Hudgens,et al.  The interplay between immune maturation, age, chronic viral infection and environment , 2015, Immunity & Ageing.

[36]  L. Lanier,et al.  Epigenetic modification and antibody-dependent expansion of memory-like NK cells in human cytomegalovirus-infected individuals. , 2015, Immunity.

[37]  Elhanan Borenstein,et al.  Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species , 2015, Cell.

[38]  Tommi Vatanen,et al.  The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. , 2015, Cell host & microbe.

[39]  M. Diamond,et al.  Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection , 2015, Science.

[40]  Atul J. Butte,et al.  Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences , 2015, Cell.

[41]  D. Lu,et al.  Breast-fed and bottle-fed infant rhesus macaques develop distinct gut microbiotas and immune systems , 2014, Science Translational Medicine.

[42]  M. Reeves,et al.  The intimate relationship between human cytomegalovirus and the dendritic cell lineage , 2014, Front. Microbiol..

[43]  Yongchao Ge,et al.  Human Cytomegalovirus Modulates Monocyte-Mediated Innate Immune Responses during Short-Term Experimental Latency In Vitro , 2014, Journal of Virology.

[44]  G. Miller,et al.  Activation and Repression of Epstein-Barr Virus and Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycles by Short- and Medium-Chain Fatty Acids , 2014, Journal of Virology.

[45]  Charity W. Law,et al.  voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.

[46]  J. Blanchard,et al.  Untangling the Genetic Basis of Fibrolytic Specialization by Lachnospiraceae and Ruminococcaceae in Diverse Gut Communities , 2013 .

[47]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[48]  J. McCune,et al.  SIV Replication in the Infected Rhesus Macaque Is Limited by the Size of the Preexisting TH17 Cell Compartment , 2012, Science Translational Medicine.

[49]  P. Mirmonsef,et al.  Short‐Chain Fatty Acids Induce Pro‐Inflammatory Cytokine Production Alone and in Combination with Toll‐Like Receptor Ligands , 2012, American journal of reproductive immunology.

[50]  L. Mosca,et al.  Antiviral activity of Lactobacillus brevis towards herpes simplex virus type 2: role of cell wall associated components. , 2011, Anaerobe.

[51]  V. Tremaroli,et al.  Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88 , 2011, Gut.

[52]  L. Picker,et al.  Cytomegalovirus-Specific T Cell Immunity Is Maintained in Immunosenescent Rhesus Macaques , 2011, The Journal of Immunology.

[53]  J. Im,et al.  Dysbiosis of the Faecal Microbiota in Patients with Crohn's Disease and Their Unaffected Relatives (Gut 2011;60:631-637) , 2011 .

[54]  J. Doré,et al.  Identification of NF-κB Modulation Capabilities within Human Intestinal Commensal Bacteria , 2011, Journal of biomedicine & biotechnology.

[55]  Matthew S. Lewis,et al.  Profound early control of highly pathogenic SIV by an effector-memory T cell vaccine , 2011, Nature.

[56]  Xavier Robin,et al.  pROC: an open-source package for R and S+ to analyze and compare ROC curves , 2011, BMC Bioinformatics.

[57]  I. Messaoudi,et al.  Nonhuman primate models of human immunology. , 2011, Antioxidants & redox signaling.

[58]  P. Vandamme,et al.  Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives , 2011, Gut.

[59]  A. Kimura,et al.  IL‐6: Regulator of Treg/Th17 balance , 2010, European journal of immunology.

[60]  William A. Walters,et al.  Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.

[61]  B. Gay,et al.  Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes. , 2010, International journal of systematic and evolutionary microbiology.

[62]  Trevor Hastie,et al.  Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.

[63]  P. Mastromarino,et al.  Inhibition of herpes simplex virus type 2 by vaginal lactobacilli. , 2009, Journal of physiology and pharmacology : an official journal of the Polish Physiological Society.

[64]  Dan R. Littman,et al.  Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria , 2009, Cell.

[65]  P. Moss,et al.  Cytomegalovirus‐seropositivity has a profound influence on the magnitude of major lymphoid subsets within healthy individuals , 2009, Clinical and experimental immunology.

[66]  J. Doré,et al.  Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.

[67]  D. Schrenk,et al.  Inhibition of histone-deacetylase activity by short-chain fatty acids and some polyphenol metabolites formed in the colon. , 2008, The Journal of nutritional biochemistry.

[68]  F. Bushman,et al.  The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis , 2008, PLoS pathogens.

[69]  D. Jonkers,et al.  Review article: the role of butyrate on colonic function , 2007, Alimentary pharmacology & therapeutics.

[70]  M. Diamond,et al.  Herpesvirus latency confers symbiotic protection from bacterial infection , 2007, Nature.

[71]  D. Sedmak,et al.  Lipopolysaccharide, Tumor Necrosis Factor Alpha, or Interleukin-1β Triggers Reactivation of Latent Cytomegalovirus in Immunocompetent Mice , 2006, Journal of Virology.

[72]  Eoin L. Brodie,et al.  Greengenes: Chimera-checked 16S rRNA gene database and workbench compatible in ARB , 2006 .

[73]  Louis J. Picker,et al.  Broadly targeted human cytomegalovirus-specific CD4+ and CD8+ T cells dominate the memory compartments of exposed subjects , 2005, The Journal of experimental medicine.

[74]  J. Davie Inhibition of histone deacetylase activity by butyrate. , 2003, The Journal of nutrition.

[75]  H. Flint,et al.  The microbiology of butyrate formation in the human colon. , 2002, FEMS microbiology letters.

[76]  H. Flad,et al.  Induction of proliferation and cytokine production in human T lymphocytes by lipopolysaccharide (LPS). , 2000, Toxicology.

[77]  W. Wade,et al.  Bulleidia extructa gen. nov., sp. nov., isolated from the oral cavity. , 2000, International journal of systematic and evolutionary microbiology.

[78]  J. Sprent,et al.  T Cell Stimulation In Vivo by Lipopolysaccharide (LPS) , 1997, The Journal of experimental medicine.

[79]  J. Shanley,et al.  The effect of short-chain fatty acids on the susceptibility of human umbilical vein endothelial cells to human cytomegalovirus infection. , 1994, Journal of virological methods.

[80]  H. Sato,et al.  Sodium butyrate-inducible replication of human cytomegalovirus in a human epithelial cell line. , 1991, Virology.

[81]  H. Steward Responses , 1991, Problems and Perspectives of Conventional Disarmament in Europe.

[82]  Karen Simmons Early-life human cytomegalovirus infections in Canadians : implications for a healthy development , 2019 .

[83]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[84]  R. Franke,et al.  Induction by sodium butyrate of cytomegalovirus replication in human endothelial cells , 2005, Archives of Virology.

[85]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..