Measuring retroactivity from noise in gene regulatory networks.
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[1] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[2] James W. Nilsson,et al. Electric Circuits , 1983 .
[3] Stephen Wolfram,et al. Mathematica: a system for doing mathematics by computer (2nd ed.) , 1991 .
[4] P. Bouloc,et al. Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). , 1998, Genes & development.
[5] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[6] M. Elowitz,et al. A synthetic oscillatory network of transcriptional regulators , 2000, Nature.
[7] W. Hillen,et al. Tet repressor induction without Mg2+. , 2000, Biochemistry.
[8] T. Kepler,et al. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. , 2001, Biophysical journal.
[9] C. Rao,et al. Control, exploitation and tolerance of intracellular noise , 2002, Nature.
[10] Ertugrul M. Ozbudak,et al. Regulation of noise in the expression of a single gene , 2002, Nature Genetics.
[11] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[12] Hiroaki Kitano,et al. Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. , 2003, Omics : a journal of integrative biology.
[13] M. L. Simpson,et al. Frequency domain analysis of noise in autoregulated gene circuits , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[14] C. Rao,et al. Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm , 2003 .
[15] U. Alon,et al. Detailed map of a cis-regulatory input function , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[16] M. L. Simpson,et al. Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation. , 2004, Journal of theoretical biology.
[17] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[18] D. Endy. Foundations for engineering biology , 2005, Nature.
[19] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[20] M. Elowitz,et al. Reconstruction of genetic circuits , 2005, Nature.
[21] T. Elston,et al. Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.
[22] Herbert M. Sauro,et al. SBW - A Modular Framework for Systems Biology , 2006, Proceedings of the 2006 Winter Simulation Conference.
[23] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[24] Christopher A. Voigt,et al. Genetic parts to program bacteria. , 2006, Current opinion in biotechnology.
[25] J. Elf,et al. Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell , 2007, Science.
[26] Eduardo Sontag,et al. Modular cell biology: retroactivity and insulation , 2008, Molecular systems biology.
[27] M. Berger,et al. The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters , 2008, Molecular microbiology.
[28] J. Keasling. Synthetic biology for synthetic chemistry. , 2008, ACS chemical biology.
[29] Julien F. Ollivier,et al. Colored extrinsic fluctuations and stochastic gene expression , 2008, Molecular systems biology.
[30] M. Elowitz,et al. Regulatory activity revealed by dynamic correlations in gene expression noise , 2008, Nature Genetics.
[31] M. L. Simpson,et al. Transient-mediated fate determination in a transcriptional circuit of HIV , 2007, Nature Genetics.
[32] D. Endy,et al. Refinement and standardization of synthetic biological parts and devices , 2008, Nature Biotechnology.
[33] Deepak Chandran,et al. TinkerCell: modular CAD tool for synthetic biology , 2009, Journal of biological engineering.
[34] Nicolas E. Buchler,et al. Protein sequestration generates a flexible ultrasensitive response in a genetic network , 2009, Molecular systems biology.
[35] Domitilla Del Vecchio,et al. On the compromise between retroactivity attenuation and noise amplification in gene regulatory networks , 2009, Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference.
[36] Brian Munsky,et al. Listening to the noise: random fluctuations reveal gene network parameters , 2009, Molecular systems biology.
[37] Priscilla E. M. Purnick,et al. The second wave of synthetic biology: from modules to systems , 2009, Nature Reviews Molecular Cell Biology.
[38] Daniel C. Ducat,et al. Insulation of a synthetic hydrogen metabolism circuit in bacteria , 2010, Journal of biological engineering.