Retinal Structure Detection in OCTA Image via Voting-Based Multitask Learning

Automated detection of retinal structures, such as retinal vessels (RV), the foveal avascular zone (FAZ), and retinal vascular junctions (RVJ), are of great importance for understanding diseases of the eye and clinical decision-making. In this paper, we propose a novel Voting-based Adaptive Feature Fusion multi-task network (VAFF-Net) for joint segmentation, detection, and classification of RV, FAZ, and RVJ in optical coherence tomography angiography (OCTA). A task-specific voting gate module is proposed to adaptively extract and fuse different features for specific tasks at two levels: features at different spatial positions from a single encoder, and features from multiple encoders. In particular, since the complexity of the microvasculature in OCTA images makes simultaneous precise localization and classification of retinal vascular junctions into bifurcation/crossing a challenging task, we specifically design a task head by combining the heatmap regression and grid classification. We take advantage of three different en face angiograms from various retinal layers, rather than following existing methods that use only a single en face. We carry out extensive experiments on three OCTA datasets acquired using different imaging devices, and the results demonstrate that the proposed method performs on the whole better than either the state-of-the-art single-purpose methods or existing multi-task learning solutions. We also demonstrate that our multi-task learning method generalizes across other imaging modalities, such as color fundus photography, and may potentially be used as a general multi-task learning tool. We also construct three datasets for multiple structure detection, and part of these datasets with the source code and evaluation benchmark have been released for public access.

[1]  Tristan T. Hormel,et al.  An end-to-end network for segmenting the vasculature of three retinal capillary plexuses from OCT angiographic volumes. , 2021, Biomedical optics express.

[2]  Junyan Lyu,et al.  BSDA-Net: A Boundary Shape and Distance Aware Joint Learning Framework for Segmenting and Classifying OCTA Images , 2021, MICCAI.

[3]  Dimitris N. Metaxas,et al.  UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation , 2021, MICCAI.

[4]  Cheolhong An,et al.  Foveal Avascular Zone Segmentation of Octa Images Using Deep Learning Approach with Unsupervised Vessel Segmentation , 2021, ICASSP 2021 - 2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[5]  Wataru Takano,et al.  Graph Stacked Hourglass Networks for 3D Human Pose Estimation , 2021, 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[6]  Yalin Zheng,et al.  3D Vessel Reconstruction In Oct-Angiography Via Depth Map Estimation , 2021, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).

[7]  Yan Wang,et al.  TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation , 2021, ArXiv.

[8]  T. MacGillivray,et al.  Macular vessel density, branching complexity and foveal avascular zone size in normal tension glaucoma , 2021, Scientific reports.

[9]  Cason B. Robbins,et al.  Characterization of Retinal Microvascular and Choroidal Structural Changes in Parkinson Disease. , 2020, JAMA ophthalmology.

[10]  Qiang Chen,et al.  IPN-V2 and OCTA-500: Methodology and Dataset for Retinal Image Segmentation , 2020, ArXiv.

[11]  T. Wong,et al.  Retinal microvasculature dysfunction is associated with Alzheimer’s disease and mild cognitive impairment , 2020, Alzheimer's research & therapy.

[12]  Su Ruan,et al.  Multi-task deep learning based CT imaging analysis for COVID-19 pneumonia: Classification and segmentation , 2020, Computers in Biology and Medicine.

[13]  Vasudevan Lakshminarayanan,et al.  The Foveal Avascular Zone Image Database (FAZID) , 2020, Optical Engineering + Applications.

[14]  K. Freund,et al.  Three-Dimensional Characterization of the Normal Human Parafoveal Microvasculature Using Structural Criteria and High-Resolution Confocal Microscopy , 2020, Investigative ophthalmology & visual science.

[15]  Yalin Zheng,et al.  ROSE: A Retinal OCT-Angiography Vessel Segmentation Dataset and New Model , 2020, IEEE Transactions on Medical Imaging.

[16]  Yali Jia,et al.  DcardNet: Diabetic Retinopathy Classification at Multiple Levels Based on Structural and Angiographic Optical Coherence Tomography , 2020, IEEE Transactions on Biomedical Engineering.

[17]  Qiang Chen,et al.  Image Projection Network: 3D to 2D Image Segmentation in OCTA Images , 2020, IEEE Transactions on Medical Imaging.

[18]  Wouter Van Gansbeke,et al.  Multi-Task Learning for Dense Prediction Tasks: A Survey , 2020, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[19]  Ming-Ming Cheng,et al.  Dynamic Feature Integration for Simultaneous Detection of Salient Object, Edge, and Skeleton , 2020, IEEE Transactions on Image Processing.

[20]  Mingchao Li,et al.  Fast and robust fovea detection framework for OCT images based on foveal avascular zone segmentation , 2020 .

[21]  Tao He,et al.  Multi-task learning for the segmentation of organs at risk with label dependence , 2020, Medical Image Anal..

[22]  Luc Van Gool,et al.  MTI-Net: Multi-Scale Task Interaction Networks for Multi-Task Learning , 2020, ECCV.

[23]  He Zhao,et al.  Retinal vascular junction detection and classification via deep neural networks , 2020, Comput. Methods Programs Biomed..

[24]  Tom MacGillivray,et al.  Automated Segmentation of Optical Coherence Tomography Angiography Images: Benchmark Data and Clinically Relevant Metrics , 2019, Translational vision science & technology.

[25]  Yongjin Zhou,et al.  Automatic quantification of superficial foveal avascular zone in optical coherence tomography angiography implemented with deep learning , 2019, Visual Computing for Industry, Biomedicine, and Art.

[26]  Jorge Novo,et al.  Deep multi-instance heatmap regression for the detection of retinal vessel crossings and bifurcations in eye fundus images , 2019, Comput. Methods Programs Biomed..

[27]  Alejandro F. Frangi,et al.  CS-Net: Channel and Spatial Attention Network for Curvilinear Structure Segmentation , 2019, MICCAI.

[28]  Songhwai Oh,et al.  Deep Elastic Networks With Model Selection for Multi-Task Learning , 2019, 2019 IEEE/CVF International Conference on Computer Vision (ICCV).

[29]  Zhiwen Yu,et al.  A survey on ensemble learning , 2019, Frontiers of Computer Science.

[30]  Hyunsoo Yoon,et al.  A Feature Transfer Enabled Multi-Task Deep Learning Model on Medical Imaging , 2019, Expert Syst. Appl..

[31]  Rachel E Linderman,et al.  Earliest Evidence of Preclinical Diabetic Retinopathy Revealed Using Optical Coherence Tomography Angiography Perfused Capillary Density. , 2019, American journal of ophthalmology.

[32]  Dinggang Shen,et al.  Joint Classification and Regression via Deep Multi-Task Multi-Channel Learning for Alzheimer's Disease Diagnosis , 2019, IEEE Transactions on Biomedical Engineering.

[33]  Qi Tian,et al.  CenterNet: Keypoint Triplets for Object Detection , 2019, 2019 IEEE/CVF International Conference on Computer Vision (ICCV).

[34]  Shenghua Gao,et al.  CE-Net: Context Encoder Network for 2D Medical Image Segmentation , 2019, IEEE Transactions on Medical Imaging.

[35]  Manuel G. Penedo,et al.  Automatic segmentation of the foveal avascular zone in ophthalmological OCT-A images , 2018, PloS one.

[36]  Ayman El-Baz,et al.  An OCTA Based Diagnosis System Based on a Comprehensive Local Features Analysis for Early Diabetic Retinopathy Detection , 2018, 2018 IEEE International Conference on Imaging Systems and Techniques (IST).

[37]  Mohammed Ghazal,et al.  Early diabetic retinopathy diagnosis based on local retinal blood vessel analysis in optical coherence tomography angiography (OCTA) images , 2018, Medical physics.

[38]  Geraint Rees,et al.  Clinically applicable deep learning for diagnosis and referral in retinal disease , 2018, Nature Medicine.

[39]  Nima Tajbakhsh,et al.  UNet++: A Nested U-Net Architecture for Medical Image Segmentation , 2018, DLMIA/ML-CDS@MICCAI.

[40]  Nicu Sebe,et al.  PAD-Net: Multi-tasks Guided Prediction-and-Distillation Network for Simultaneous Depth Estimation and Scene Parsing , 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[41]  H. Terasaki,et al.  Macular Displacement After Vitrectomy in Eyes With Idiopathic Macular Hole Determined by Optical Coherence Tomography Angiography. , 2018, American journal of ophthalmology.

[42]  Andrew J. Davison,et al.  End-To-End Multi-Task Learning With Attention , 2018, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[43]  Valery Naranjo,et al.  Retinal network characterization through fundus image processing: Significant point identification on vessel centerline , 2017, Signal Process. Image Commun..

[44]  Ayman El-Baz,et al.  Automatic blood vessels segmentation based on different retinal maps from OCTA scans , 2017, Comput. Biol. Medicine.

[45]  Ruikang K. Wang,et al.  Optical coherence tomography angiography: A comprehensive review of current methods and clinical applications , 2017, Progress in Retinal and Eye Research.

[46]  Roberto Cipolla,et al.  Multi-task Learning Using Uncertainty to Weigh Losses for Scene Geometry and Semantics , 2017, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[47]  Lei Liu,et al.  Quantifying Microvascular Abnormalities With Increasing Severity of Diabetic Retinopathy Using Optical Coherence Tomography Angiography , 2017, Investigative ophthalmology & visual science.

[48]  David J. Wilson,et al.  Detailed Vascular Anatomy of the Human Retina by Projection-Resolved Optical Coherence Tomography Angiography , 2017, Scientific Reports.

[49]  Iasonas Kokkinos,et al.  UberNet: Training a Universal Convolutional Neural Network for Low-, Mid-, and High-Level Vision Using Diverse Datasets and Limited Memory , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[50]  Gangjun Liu,et al.  Optical Coherence Tomography Angiography , 2016, Investigative ophthalmology & visual science.

[51]  Erik J. Bekkers,et al.  Automatic detection of vascular bifurcations and crossings in retinal images using orientation scores , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[52]  A. Gupta,et al.  Cross-Stitch Networks for Multi-task Learning , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[53]  Jia Deng,et al.  Stacked Hourglass Networks for Human Pose Estimation , 2016, ECCV.

[54]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[55]  Ali Farhadi,et al.  You Only Look Once: Unified, Real-Time Object Detection , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[56]  Kaiming He,et al.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[57]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[58]  Jian Sun,et al.  Delving Deep into Rectifiers: Surpassing Human-Level Performance on ImageNet Classification , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[59]  Ana Maria Mendonça,et al.  An Automatic Graph-Based Approach for Artery/Vein Classification in Retinal Images , 2014, IEEE Transactions on Image Processing.

[60]  Manuel G. Penedo,et al.  Automatic detection and characterisation of retinal vessel tree bifurcations and crossovers in eye fundus images , 2011, Comput. Methods Programs Biomed..

[61]  Yoshua Bengio,et al.  Understanding the difficulty of training deep feedforward neural networks , 2010, AISTATS.

[62]  Pujin Cheng,et al.  FARGO: A Joint Framework for FAZ and RV Segmentation from OCTA Images , 2021, OMIA@MICCAI.