Using community metabolomics as a new approach to discriminate marine microbial particulate organic matter in the western English Channel
暂无分享,去创建一个
M. Viant | A. Allen | C. Dupont | U. Sommer | C. Llewellyn
[1] S. Wright,et al. Phytoplankton pigments in oceanography , 2016 .
[2] Jennifer A Kirwan,et al. Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control , 2014, Scientific Data.
[3] Jianguo Fang,et al. Shikonin targets cytosolic thioredoxin reductase to induce ROS-mediated apoptosis in human promyelocytic leukemia HL-60 cells. , 2014, Free radical biology & medicine.
[4] T. Williams,et al. Marine metaproteomics: deciphering the microbial metabolic food web. , 2014, Trends in microbiology.
[5] S. Giovannoni,et al. Implications of streamlining theory for microbial ecology , 2014, The ISME Journal.
[6] Christopher L. Follett,et al. Closely related phytoplankton species produce similar suites of dissolved organic matter , 2014, Front. Microbiol..
[7] Oliver A.H. Jones,et al. Metabolomic analysis of soil communities can be used for pollution assessment , 2014, Environmental toxicology and chemistry.
[8] Manuel Manchado,et al. Differences in betaine lipids and fatty acids between Pseudoisochrysis paradoxa VLP and Diacronema vlkianum VLP isolates (Haptophyta). , 2013, Phytochemistry.
[9] Richard Baran,et al. Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics , 2013, Marine drugs.
[10] P. Nightingale,et al. Production of methanol, acetaldehyde, and acetone in the Atlantic Ocean , 2013 .
[11] R. Volkamer,et al. Formation of gas-phase carbonyls from heterogeneous oxidation of polyunsaturated fatty acids at the air–water interface and of the sea surface microlayer , 2013 .
[12] C. Klausmeier,et al. Functional traits explain phytoplankton responses to environmental gradients across lakes of the United States. , 2013, Ecology.
[13] A. Gómez-Cadenas,et al. Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants , 2013, International journal of molecular sciences.
[14] M. Viant,et al. Mass spectrometry based environmental metabolomics: a primer and review , 2013, Metabolomics.
[15] J. Kopka,et al. Recent Applications of Metabolomics Toward Cyanobacteria , 2013, Metabolites.
[16] G. Pohnert,et al. Comparative metabolomics of the diatom Skeletonema marinoi in different growth phases , 2012, Metabolomics.
[17] J. Gilbert,et al. Modeling microbial communities: current, developing, and future technologies for predicting microbial community interaction. , 2012, Journal of biotechnology.
[18] J. Brandsma,et al. Spatial distribution of intact polar lipids in North Sea surface waters: Relationship with environmental conditions and microbial community composition , 2012 .
[19] A. Fernie,et al. Leveraging metabolomics for functional investigations in sequenced marine diatoms. , 2012, Trends in plant science.
[20] J. Nicholson,et al. Host-Gut Microbiota Metabolic Interactions , 2012, Science.
[21] M. Viant,et al. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline , 2012, Metabolomics.
[22] G. Siuzdak,et al. XCMS Online: a web-based platform to process untargeted metabolomic data. , 2012, Analytical chemistry.
[23] Ruben E. Valas,et al. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage , 2011, The ISME Journal.
[24] Gautier Koscielny,et al. Ensembl 2012 , 2011, Nucleic Acids Res..
[25] Susumu Goto,et al. KEGG for integration and interpretation of large-scale molecular data sets , 2011, Nucleic Acids Res..
[26] P. Pevzner,et al. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets , 2011, Nature Biotechnology.
[27] Urban Tillmann,et al. The Relevance of Marine Chemical Ecology to Plankton and Ecosystem Function: An Emerging Field , 2011, Marine drugs.
[28] Jane Tang,et al. Microbial Metabolomics , 2011, Current genomics.
[29] Susan M. Huse,et al. Defining seasonal marine microbial community dynamics , 2011, The ISME Journal.
[30] Ralf J. M. Weber,et al. Characterization of isotopic abundance measurements in high resolution FT-ICR and Orbitrap mass spectra for improved confidence of metabolite identification. , 2011, Analytical chemistry.
[31] K. Forchhammer,et al. Metabolic and Transcriptomic Phenotyping of Inorganic Carbon Acclimation in the Cyanobacterium Synechococcus elongatus PCC 79421[W] , 2011, Plant Physiology.
[32] S. Wakeham,et al. Degradation of particulate organic matter in the equatorial Pacific Ocean: Biotic or abiotic? , 2011 .
[33] Susan M. Huse,et al. The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation , 2010, PloS one.
[34] Mark R. Viant,et al. MI-Pack: Increased confidence of metabolite identification in mass spectra by integrating accurate masses and metabolic pathways , 2010 .
[35] J. Gilbert,et al. Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel , 2010, Standards in genomic sciences.
[36] Richard Baran,et al. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. , 2010, Analytical chemistry.
[37] A. Halpern,et al. Characterization of Prochlorococcus clades from iron-depleted oceanic regions , 2010, Proceedings of the National Academy of Sciences.
[38] D. Harbour,et al. Long-term phytoplankton community dynamics in the western English Channel , 2010 .
[39] T. Smyth,et al. A broad spatio-temporal view of the western English Channel observatory , 2010 .
[40] R. Airs,et al. Distribution and Abundance of MAAs in 33 Species of Microalgae across 13 Classes , 2010, Marine drugs.
[41] Limin Fu,et al. Artificial and natural duplicates in pyrosequencing reads of metagenomic data , 2010, BMC Bioinformatics.
[42] A. Ianora,et al. Toxigenic effects of diatoms on grazers, phytoplankton and other microbes: a review , 2010, Ecotoxicology.
[43] Natalia N. Ivanova,et al. The integrated microbial genomes system: an expanding comparative analysis resource , 2009, Nucleic Acids Res..
[44] Jianhua Ruan,et al. A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes , 2009, BMC Bioinformatics.
[45] Theodoros N. Arvanitis,et al. A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data , 2009, Journal of the American Society for Mass Spectrometry.
[46] Lisa R. Moore,et al. Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity , 2009, Nature.
[47] P. Turnbaugh,et al. An Invitation to the Marriage of Metagenomics and Metabolomics , 2008, Cell.
[48] P. May,et al. Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii , 2008, Genetics.
[49] O. Fiehn,et al. High quality metabolomic data for Chlamydomonas reinhardtii , 2008, Plant Methods.
[50] Maureen L. Coleman,et al. Microbial community gene expression in ocean surface waters , 2008, Proceedings of the National Academy of Sciences.
[51] M. Viant,et al. High-throughput tissue extraction protocol for NMR- and MS-based metabolomics. , 2008, Analytical biochemistry.
[52] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[53] P. Villeneuve,et al. Evaluation of the ability of antioxidants to counteract lipid oxidation: existing methods, new trends and challenges. , 2007, Progress in lipid research.
[54] Nigel W. Hardy,et al. Proposed minimum reporting standards for chemical analysis , 2007, Metabolomics.
[55] Mark R. Viant,et al. Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation , 2007, BMC Bioinformatics.
[56] Theodoros N. Arvanitis,et al. Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method. , 2007, Analytical chemistry.
[57] Nicholas H. Putnam,et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation , 2007, Proceedings of the National Academy of Sciences.
[58] H. Senn,et al. Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics. , 2006, Analytical chemistry.
[59] B. Singer,et al. Controlling the False Discovery Rate: A New Application to Account for Multiple and Dependent Tests in Local Statistics of Spatial Association , 2006 .
[60] S. Wakeham,et al. Particulate Organic Matter in the Sea: The Composition Conundrum , 2004, Ambio.
[61] J. Blackford,et al. Phytoplankton community assemblage in the English Channel: a comparison using chlorophyll a derived from HPLC-CHEMTAX and carbon derived from microscopy cell counts , 2004 .
[62] M. T. Arts,et al. Essential fatty acids in the planktonic food web and their ecological role for higher trophic levels , 2004 .
[63] D. Harbour,et al. A temporal study of mycosporine-like amino acids in surface water phytoplankton from the English Channel and correlation with solar irradiation , 2003, Journal of the Marine Biological Association of the United Kingdom.
[64] O. Nishimura,et al. Synthesis and anti‐Helicobacter pylori Activity of Pyloricidin Derivatives. Part 1. Structure—Activity Relationships on the Terminal Peptidic Moiety. , 2002 .
[65] O. Nishimura,et al. Synthesis and anti-Helicobacter pylori activity of pyloricidin derivatives I. Structure-activity relationships on the terminal peptidic moiety. , 2002, The Journal of antibiotics.
[66] D. Harbour,et al. Environmental and nutritional factors determining seasonal variability in the fecundity and egg viability of Calanus helgolandicus in coastal waters off Plymouth, UK , 1996 .
[67] C. Llewellyn,et al. Pigment biomarkers and particulate carbon in the upper water column compared to the ocean interior of the northeast Atlantic , 1996 .
[68] H. Sano,et al. Distribution of betaine lipids in marinealgae , 1995 .
[69] R. Bidigare,et al. The distribution of algal chlorophylls and their degradation products in the Southern Ocean , 1986 .
[70] N. J. Antia,et al. GROWTH OF A MARINE DIATOM AND A HAPTOPHYCEAN ALGA ON PHENYLALANINE OR TYROSINE SERVING AS SOLE NITROGEN SOURCE 1 , 1977 .
[71] N. Handa,et al. A detailed analysis of carbohydrates in marine particulate matter , 1969 .
[72] C. Klausmeier,et al. Functional traits explain phytoplankton community structure and seasonal dynamics in a marine ecosystem. , 2013, Ecology letters.
[73] J. Gilbert,et al. Microbial metagenomics: beyond the genome. , 2011, Annual review of marine science.
[74] Age K. Smilde,et al. UvA-DARE ( Digital Academic Repository ) Assessment of PLSDA cross validation , 2008 .
[75] R. Barlow,et al. Pigment processes in the sea: a selected bibliography , 1997 .
[76] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[77] S. Wakeham,et al. Organic geochemistry of particulate matter in the ocean: the role of particles in oceanic sedimentary cycles , 1989 .
[78] W. Lewis. The Phytoplankton Community , 1979 .
[79] T. Kaneda,et al. Studies on the effect of marine products on cholesterol metabolism in rats. XI. Isolation of a new betaine, ulvaline, from a green laver monosrtoma nitidum and its depressing effect on plasma cholesterol levels. , 1975 .