On the distribution and packing of RNA and protein ribosomes.

From the analysis of the measured radii of gyration of the RNA (Rg = 6.6 +/- 0.3 nm) and protein (Rg = 10.2 +/- 0.5 nm) components of the 50-S subparticle of Escherichia coli ribosomes it is concluded that proteins containing a large amount of hydrodynamically bound water are located on the periphery of the tightly packed RNA. We found that the common features of the measured X-ray scattering curves of the E. coli 70-S ribosome, its 30-S and 50-S subparticles and wheat 80-S ribosomes in the region of scattering angles corresponding to scattering vectors mu from 1 to 5 nm-1 reflect features of the RNA compact packing. A hypothesis is proposed that the compact packing of RNA helices in the range of Bragg distances of 4.5--2.0 nm is a general structural feature of all ribosomal particles.

[1]  I. Serdyuk,et al.  Study of 30-S ribosomal subparticle protein-deficient ribonucleoprotein derivatives by X-ray diffusion-scattering. , 1977, European journal of biochemistry.

[2]  J A Lake,et al.  Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes. , 1976, Journal of molecular biology.

[3]  R. Crichton,et al.  New low resolution model for 50S subunit of Escherichia coli ribosomes. , 1976, Proceedings of the National Academy of Sciences of the United States of America.

[4]  I. Serdyuk,et al.  Joint use of light, x‐ray and neutron scattering for investigation of RNA and protein mutual distribution within the 50S subparticle of E. coli ribosomes , 1975, FEBS letters.

[5]  B. Schoenborn,et al.  A neutron scattering study of the distribution of protein and RNA in the 30 S ribosomal subunit of Escherichia coli. , 1975, Journal of molecular biology.

[6]  R. Fessenden,et al.  Structural studies on the 30 S ribosomal subunit from Escherichia coli. , 1974, Journal of molecular biology.

[7]  I. Serdyuk,et al.  Determination of radii of gyration of particles in the 200 to 70 Å interval by the light scattering method. Polystyrene in toluene and poly(methyl methacrylate) in acetonitrile , 1974 .

[8]  B. Schoenborn,et al.  Asymmetry in the 50S ribosomal subunit of Escherichia coli. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[9]  D. Weeks,et al.  The wheat embryo cell-free system. , 1974, Methods in enzymology.

[10]  W. Hill,et al.  A molecular weight determination of the 16S ribosomal ribonucleic acid from Escherichia coli. , 1973, Biochemistry.

[11]  M. A. Ajtkhozhin,et al.  Informosomes of germinating wheat embryos , 1973 .

[12]  S. Edelstein,et al.  [4] Measurement of partial specific volume by sedimentation equilibrium in H2OD2O solutions , 1973 .

[13]  T. Hohn,et al.  An x-ray small angle study of the bacteriophages fr and R17. , 1971, European journal of biochemistry.

[14]  J. Škerjanc,et al.  The partial specific volume of chymotrypsinogen A in aqueous urea solutions. , 1970, European journal of biochemistry.

[15]  A. Gulik,et al.  Conformation of single-stranded polynucleotides: small-angle x-ray scattering and spectroscopic study of polyribocytidylic acid in water and in water-alcohol solutions. , 1970, Journal of molecular biology.

[16]  K. V. van Holde,et al.  Effects of solvent environment and mode of preparation on the physical properties of ribosomes fron Escherichia coli. , 1970, Journal of molecular biology.

[17]  B. Fedorov,et al.  On the presence of a dense internal region in the 50 S subparticle of E. coli ribosomes , 1970, FEBS letters.

[18]  J. Venable,et al.  Low-angle x-ray diffraction maxima from ribosomes. , 1970, Biochimica et biophysica acta.

[19]  A. Spirin The second Sir Hans Krebs Lecture. Informosomes. , 2005, European journal of biochemistry.

[20]  S. Bonanou,et al.  A possible structure of the rabbit reticulocyte ribosome. An exercise in model building. , 1969, The Biochemical journal.

[21]  J. Anderegg,et al.  X-ray scattering study of ribosomes from Escherichia coli. , 1969, Journal of molecular biology.

[22]  J. Sturtevant,et al.  Volume changes accompanying the thermal denaturation of deoxyribonucleic acid. I. Denaturation at neutral pH , 1969 .

[23]  J. A. Lake,et al.  An iterative method of slit‐correcting small angle X‐ray data , 1967 .

[24]  A. Chrambach,et al.  Physical heterogeneity of the ribosomal proteins from Escherichia coli. , 1967, Journal of molecular biology.

[25]  C. Kurland The requirements for specific sRNA binding by ribosomes. , 1966, Journal of molecular biology.

[26]  A. Spirin,et al.  Studies on the structure of ribosomes. 3. Stepwise unfolding of the 50 s particles without loss of ribosomal protein. , 1966, Journal of molecular biology.

[27]  R. Bock,et al.  Isolation and physical properties of the ribosomal ribonucleic acid of Escherichia coli. , 1965, Biochemistry.

[28]  R. Langridge Ribosomes: A Common Structural Feature , 1963, Science.

[29]  P. Spahr Amino acid composition of ribosomes from Escherichia coli. , 1962, Journal of molecular biology.

[30]  A. Klug,et al.  X-ray diffraction studies on ribosomes from various sources. , 1961, Journal of molecular biology.

[31]  C. Kurland Molecular characterization of ribonucleic acid from Escherichia coli ribosomes , 1960 .

[32]  A. Tissières,et al.  Nucleotide composition of ribonucleoprotein particles from Escherichia coli , 1959 .

[33]  A. Tissières,et al.  Ribonucleoprotein Particles from Escherichia Coli , 1958, Nature.