On the metrics and euler-lagrange equations of computational anatomy.

This paper reviews literature, current concepts and approaches in computational anatomy (CA). The model of CA is a Grenander deformable template, an orbit generated from a template under groups of diffeomorphisms. The metric space of all anatomical images is constructed from the geodesic connecting one anatomical structure to another in the orbit. The variational problems specifying these metrics are reviewed along with their associated Euler-Lagrange equations. The Euler equations of motion derived by Arnold for the geodesics in the group of divergence-free volume-preserving diffeomorphisms of incompressible fluids are generalized for the larger group of diffeomorphisms used in CA with nonconstant Jacobians. Metrics that accommodate photometric variation are described extending the anatomical model to incorporate the construction of neoplasm. Metrics on landmarked shapes are reviewed as well as Joshi's diffeomorphism metrics, Bookstein's thin-plate spline approximate-metrics, and Kendall's affine invariant metrics. We conclude by showing recent experimental results from the Toga & Thompson group in growth, the Van Essen group in macaque and human cortex mapping, and the Csernansky group in hippocampus mapping for neuropsychiatric studies in aging and schizophrenia.

[1]  W. Boothby An introduction to differentiable manifolds and Riemannian geometry , 1975 .

[2]  F. Bookstein,et al.  The Measurement of Biological Shape and Shape Change. , 1980 .

[3]  R. Bajcsy,et al.  A computerized system for the elastic matching of deformed radiographic images to idealized atlas images. , 1983, Journal of computer assisted tomography.

[4]  D. Kendall SHAPE MANIFOLDS, PROCRUSTEAN METRICS, AND COMPLEX PROJECTIVE SPACES , 1984 .

[5]  Demetri Terzopoulos,et al.  Multiresolution computation of visible-surface representations , 1984 .

[6]  Alan C. Evans,et al.  Anatomical-Functional Correlation Using an Adjustable MRI-Based Region of Interest Atlas with Positron Emission Tomography , 1988, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[7]  Ruzena Bajcsy,et al.  Multiresolution elastic matching , 1989, Comput. Vis. Graph. Image Process..

[8]  R. Bajcsy,et al.  Evaluation of Elastic Matching System for Anatomic (CT, MR) and Functional (PET) Cerebral Images , 1989, Journal of computer assisted tomography.

[9]  Demetri Terzopoulos,et al.  Physically-based facial modelling, analysis, and animation , 1990, Comput. Animat. Virtual Worlds.

[10]  Ron Kikinis,et al.  Extraction of morphometric information from dual echo magnetic resonance brain images , 1990, Other Conferences.

[11]  Dimitris N. Metaxas,et al.  Dynamic 3D models with local and global deformations: deformable superquadrics , 1990, [1990] Proceedings Third International Conference on Computer Vision.

[12]  Alex Pentland,et al.  Closed-Form Solutions for Physically Based Shape Modeling and Recognition , 1991, IEEE Trans. Pattern Anal. Mach. Intell..

[13]  Fred L. Bookstein,et al.  Morphometric Tools for Landmark Data. , 1998 .

[14]  D. Louis Collins,et al.  Warping of a computerized 3-D atlas to match brain image volumes for quantitative neuroanatomical and functional analysis , 1991, Medical Imaging.

[15]  Constance M. Pechura,et al.  Mapping the brain and its functions: integrating enabling technologies into neuroscience research , 1991 .

[16]  U. Grenander,et al.  Structural Image Restoration through Deformable Templates , 1991 .

[17]  Y. Amit,et al.  A Nonhomogeneous Markov Process for the Estimation of Gaussian Random Fields with Nonlinear Observations , 1991 .

[18]  T. Greitz,et al.  A computerized brain atlas: construction, anatomical content, and some applications. , 1991, Journal of computer assisted tomography.

[19]  Dimitris N. Metaxas,et al.  Dynamic 3D Models with Local and Global Deformations: Deformable Superquadrics , 1991, IEEE Trans. Pattern Anal. Mach. Intell..

[20]  Karl J. Friston,et al.  Plastic transformation of PET images. , 1991, Journal of computer assisted tomography.

[21]  Fred L. Bookstein,et al.  Edge information at landmarks in medical images , 1992, Other Conferences.

[22]  Karl Heinz Höhne,et al.  A volume-based anatomical atlas , 1992, IEEE Computer Graphics and Applications.

[23]  James S. Duncan,et al.  Boundary Finding with Parametrically Deformable Models , 1992, IEEE Trans. Pattern Anal. Mach. Intell..

[24]  A. Galaburda,et al.  Human Cerebral Cortex: Localization, Parcellation, and Morphometry with Magnetic Resonance Imaging , 1992, Journal of Cognitive Neuroscience.

[25]  M. LeMay,et al.  Abnormalities of the left temporal lobe and thought disorder in schizophrenia. A quantitative magnetic resonance imaging study. , 1992, The New England journal of medicine.

[26]  A. Galaburda,et al.  Topographical variation of the human primary cortices: implications for neuroimaging, brain mapping, and neurobiology. , 1993, Cerebral cortex.

[27]  M I Miller,et al.  Mathematical textbook of deformable neuroanatomies. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[28]  A. Dale,et al.  Improved Localizadon of Cortical Activity by Combining EEG and MEG with MRI Cortical Surface Reconstruction: A Linear Approach , 1993, Journal of Cognitive Neuroscience.

[29]  R Kikinis,et al.  Auditory P300 abnormalities and left posterior superior temporal gyrus volume reduction in schizophrenia. , 1993, Archives of general psychiatry.

[30]  Michael I. Miller,et al.  REPRESENTATIONS OF KNOWLEDGE IN COMPLEX SYSTEMS , 1994 .

[31]  Demetri Terzopoulos,et al.  Computer-assisted registration, segmentation, and 3D reconstruction from images of neuronal tissue sections , 1994, IEEE Trans. Medical Imaging.

[32]  Ruzena Bajcsy,et al.  Matching structural images of the human brain using statistical and geometrical image features , 1994, Other Conferences.

[33]  J. Marsden,et al.  Introduction to mechanics and symmetry , 1994 .

[34]  D. Collins,et al.  Automatic 3D Intersubject Registration of MR Volumetric Data in Standardized Talairach Space , 1994, Journal of computer assisted tomography.

[35]  Alexis Gourdon,et al.  Computing the Differential Characteristics of Isointensity Surfaces , 1995, Comput. Vis. Image Underst..

[36]  Arthur W. Toga,et al.  A Probabilistic Atlas of the Human Brain: Theory and Rationale for Its Development The International Consortium for Brain Mapping (ICBM) , 1995, NeuroImage.

[37]  Michael I. Miller,et al.  Hierarchical brain mapping via a generalized Dirichlet solution for mapping brain manifolds , 1995, Optics & Photonics.

[38]  D. Louis Collins,et al.  Automatic 3‐D model‐based neuroanatomical segmentation , 1995 .

[39]  A. Trouvé Action de groupe de dimension infinie et reconnaissance de formes , 1995 .

[40]  Godfrey D. Pearlson,et al.  Posterior superior temporal gyrus in schizophrenia: grey matter changes and clinical correlates , 1995, Schizophrenia Research.

[41]  Karl J. Friston,et al.  Spatial registration and normalization of images , 1995 .

[42]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[43]  D. V. van Essen,et al.  Computerized Mappings of the Cerebral Cortex: A Multiresolution Flattening Method and a Surface-Based Coordinate System , 1996, Journal of Cognitive Neuroscience.

[44]  Jerry L Prince,et al.  A computerized approach for morphological analysis of the corpus callosum. , 1996, Journal of computer assisted tomography.

[45]  James S. Duncan,et al.  Deformable boundary finding in medical images by integrating gradient and region information , 1996, IEEE Trans. Medical Imaging.

[46]  G. Christensen,et al.  Hippocampal MR imaging morphometry by means of general pattern matching. , 1996, Radiology.

[47]  Alexis Gourdon,et al.  The 3D Marching Lines Algorithm , 1996, CVGIP Graph. Model. Image Process..

[48]  F L Bookstein,et al.  Biometrics, biomathematics and the morphometric synthesis. , 1996, Bulletin of mathematical biology.

[49]  Michael I. Miller,et al.  Deformable templates using large deformation kinematics , 1996, IEEE Trans. Image Process..

[50]  Timothy F. Cootes,et al.  Active Shape Models and the shape approximation problem , 1996, Image Vis. Comput..

[51]  C. Davatzikos Spatial normalization of 3D brain images using deformable models. , 1996, Journal of computer assisted tomography.

[52]  Anand Rangarajan,et al.  The Softassign Procrustes Matching Algorithm , 1997, IPMI.

[53]  Guillermo Sapiro,et al.  Creating connected representations of cortical gray matter for functional MRI visualization , 1997, IEEE Transactions on Medical Imaging.

[54]  D. V. van Essen,et al.  Structural and Functional Analyses of Human Cerebral Cortex Using a Surface-Based Atlas , 1997, The Journal of Neuroscience.

[55]  M W Vannier,et al.  Three-dimensional hippocampal MR morphometry with high-dimensional transformation of a neuroanatomic atlas. , 1997, Radiology.

[56]  Paul Dupuis,et al.  Variational problems on ows of di eomorphisms for image matching , 1998 .

[57]  R. Kikinis,et al.  An Automated Registration Algorithm for Measuring MRI Subcortical Brain Structures , 1997, NeuroImage.

[58]  Christos Davatzikos,et al.  Spatial Transformation and Registration of Brain Images Using Elastically Deformable Models , 1997, Comput. Vis. Image Underst..

[59]  Michael I. Miller,et al.  On The Geometry and Shape of Brain Sub-Manifolds , 1997, Int. J. Pattern Recognit. Artif. Intell..

[60]  Christos Davatzikos,et al.  Finding parametric representations of the cortical sulci using an active contour model , 1997, Medical Image Anal..

[61]  F. Bookstein Shape and the information in medical images: a decade of the morphometric synthesis , 1997, Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis.

[62]  Michael I. Miller,et al.  Volumetric transformation of brain anatomy , 1997, IEEE Transactions on Medical Imaging.

[63]  U. Grenander,et al.  Statistical methods in computational anatomy , 1997, Statistical methods in medical research.

[64]  Nicholas Ayache,et al.  3D-2D Projective Registration of Free-Form Curves and Surfaces , 1997, Comput. Vis. Image Underst..

[65]  Michael I. Miller,et al.  Dynamic Programming Generation of Curves on Brain Surfaces , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[66]  Lawrence H. Staib,et al.  Elastic Model Based Non-rigid Registration Incorporation Statistical Shape Information , 1998, MICCAI.

[67]  Laurent Younes,et al.  Computable Elastic Distances Between Shapes , 1998, SIAM J. Appl. Math..

[68]  U. Grenander,et al.  Computational anatomy: an emerging discipline , 1998 .

[69]  D. V. van Essen,et al.  Functional and structural mapping of human cerebral cortex: solutions are in the surfaces. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[70]  Timothy F. Cootes,et al.  Active Appearance Models , 1998, ECCV.

[71]  Ron Kikinis,et al.  A High Performance Computing Approach to the Registration of Medical Imaging Data , 1998, Parallel Comput..

[72]  M. Corbetta,et al.  A Common Network of Functional Areas for Attention and Eye Movements , 1998, Neuron.

[73]  Lawrence H. Staib,et al.  Integrated approaches to non-rigid registration in medical images , 1998, Proceedings Fourth IEEE Workshop on Applications of Computer Vision. WACV'98 (Cat. No.98EX201).

[74]  U. Grenander,et al.  Hippocampal morphometry in schizophrenia by high dimensional brain mapping. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[75]  V. Arnold,et al.  Topological methods in hydrodynamics , 1998 .

[76]  Alex Pentland,et al.  Characterization of Neuropathological Shape Deformations , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[77]  Muge M. Bakircioglu,et al.  Curve matching on brain surfaces using frenet distances , 1998, Human brain mapping.

[78]  A. Dale,et al.  High‐resolution intersubject averaging and a coordinate system for the cortical surface , 1999, Human brain mapping.

[79]  Michael I. Miller,et al.  Landmark matching on brain surfaces via large deformation diffeomorphisms on the sphere , 1999, Medical Imaging.

[80]  Anders M. Dale,et al.  Cortical Surface-Based Analysis I. Segmentation and Surface Reconstruction , 1999, NeuroImage.

[81]  James C. Gee,et al.  On matching brain volumes , 1999, Pattern Recognit..

[82]  Paul M. Thompson,et al.  An Introduction to Brain Warping , 1999 .

[83]  David A. Rottenberg,et al.  Quasi-Conformally Flat Mapping the Human Cerebellum , 1999, MICCAI.

[84]  B. Wandell Computational neuroimaging of human visual cortex. , 1999, Annual review of neuroscience.

[85]  Christos Davatzikos,et al.  Nonlinear elastic registration of brain images with tumor pathology using a biomechanical model [MRI] , 1999, IEEE Transactions on Medical Imaging.

[86]  Stan Sclaroff,et al.  Deformable shape detection and description via model-based region grouping , 1999, Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No PR00149).

[87]  Alan C. Evans,et al.  Structural maturation of neural pathways in children and adolescents: in vivo study. , 1999, Science.

[88]  Michael I. Miller,et al.  Brain Segmentation and the Generation of Cortical Surfaces , 1999, NeuroImage.

[89]  J. Rapoport,et al.  Progressive cortical change during adolescence in childhood-onset schizophrenia. A longitudinal magnetic resonance imaging study. , 1999, Archives of general psychiatry.

[90]  Jerry L. Prince,et al.  Reconstruction of the human cerebral cortex from magnetic resonance images , 1999, IEEE Transactions on Medical Imaging.

[91]  Paul M. Thompson,et al.  Anatomically Driven Strategies for High-Dimensional Brain Image Warping and Pathology Detection , 1999 .

[92]  R. Bajcsy,et al.  Elastic Matching: Continuum Mechanical and Probabilistic Analysis , 1999 .

[93]  A. Dale,et al.  Cortical Surface-Based Analysis II: Inflation, Flattening, and a Surface-Based Coordinate System , 1999, NeuroImage.

[94]  James S. Duncan,et al.  Game-Theoretic Integration for Image Segmentation , 1999, IEEE Trans. Pattern Anal. Mach. Intell..

[95]  James C. Gee,et al.  Numerical Methods for High-Dimensional Warps , 1999 .

[96]  N. Ayache,et al.  Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections , 1999 .

[97]  Sven Kreiborg,et al.  Surface-bounded growth modeling applied to human mandibles , 2000, IEEE Transactions on Medical Imaging.

[98]  Arthur W. Toga,et al.  Brain Image Analysis and Atlas Construction , 2000 .

[99]  Lawrence H. Staib,et al.  Boundary Finding with Prior Shape and Smoothness Models , 2000, IEEE Trans. Pattern Anal. Mach. Intell..

[100]  Alan C. Evans,et al.  Growth patterns in the developing brain detected by using continuum mechanical tensor maps , 2000, Nature.

[101]  Jerry L Prince,et al.  Current methods in medical image segmentation. , 2000, Annual review of biomedical engineering.

[102]  N. Hata,et al.  Three-Dimensional Optical Flow Method for Measurement of Volumetric Brain Deformation from Intraoperative MR Images , 2000, Journal of computer assisted tomography.

[103]  B. Wandell,et al.  Visualization and Measurement of the Cortical Surface , 2000, Journal of Cognitive Neuroscience.

[104]  Michael I. Miller,et al.  Bayesian Construction of Geometrically Based Cortical Thickness Metrics , 2000, NeuroImage.

[105]  Lawrence H. Staib,et al.  Shape-based 3D surface correspondence using geodesics and local geometry , 2000, Proceedings IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2000 (Cat. No.PR00662).

[106]  S. Joshi,et al.  Early DAT is distinguished from aging by high-dimensional mapping of the hippocampus , 2000, Neurology.

[107]  Michael I. Miller,et al.  Landmark matching via large deformation diffeomorphisms , 2000, IEEE Trans. Image Process..

[108]  Jean-Francois Mangin,et al.  Multisubject Non-rigid Registration of Brain MRI Using Intensity and Geometric Features , 2001, MICCAI.

[109]  Karl J. Friston,et al.  A Voxel-Based Morphometric Study of Ageing in 465 Normal Adult Human Brains , 2001, NeuroImage.

[110]  Muge M. Bakircioglu,et al.  Mapping visual cortex in monkeys and humans using surface-based atlases , 2001, Vision Research.

[111]  A Bartesaghi,et al.  A system for the generation of curves on 3D brain images , 2001, Human brain mapping.

[112]  J. Rapoport,et al.  Mapping adolescent brain change reveals dynamic wave of accelerated gray matter loss in very early-onset schizophrenia , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[113]  Nicholas Ayache,et al.  Three-dimensional multimodal brain warping using the Demons algorithm and adaptive intensity corrections , 2001, IEEE Transactions on Medical Imaging.

[114]  Alan C. Evans,et al.  A Unified Statistical Approach to Deformation-Based Morphometry , 2001, NeuroImage.

[115]  J Mazziotta,et al.  A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[116]  J. T. Ratnanather,et al.  Validating Cortical Surface Analysis of Medial Prefrontal Cortex , 2001, NeuroImage.

[117]  M. Miller,et al.  Statistical Analysis of Hippocampal Asymmetry in Schizophrenia , 2001, NeuroImage.

[118]  Max A. Viergever,et al.  Measuring biological shape using geometry-based shape transformations , 2001, Image Vis. Comput..

[119]  Dinggang Shen,et al.  A framework for predictive modeling of anatomical deformations , 2001, IEEE Transactions on Medical Imaging.

[120]  G. Sapiro,et al.  Geometric partial differential equations and image analysis [Book Reviews] , 2001, IEEE Transactions on Medical Imaging.

[121]  Dinggang Shen,et al.  An adaptive-focus statistical shape model for segmentation and shape modeling of 3-D brain structures , 2001, IEEE Transactions on Medical Imaging.

[122]  L. Younes,et al.  Local Analysis on a Shape Manifold , 2002 .

[123]  Anders M. Dale,et al.  Improved Localization of Cortical Activity By Combining EEG and MEG with MRI Cortical Surface Reconstruction , 2002 .

[124]  Alain Trouvé,et al.  Diffeomorphisms Groups and Pattern Matching in Image Analysis , 1998, International Journal of Computer Vision.

[125]  Michael I. Miller,et al.  Group Actions, Homeomorphisms, and Matching: A General Framework , 2004, International Journal of Computer Vision.

[126]  Anja Vogler,et al.  An Introduction to Multivariate Statistical Analysis , 2004 .