Torsional elasticity and energetics of F1-ATPase
暂无分享,去创建一个
[1] H. Stahlberg,et al. Bacterial Na+‐ATP synthase has an undecameric rotor , 2001, EMBO reports.
[2] Kazuhiko Kinosita,et al. F1-ATPase Is a Highly Efficient Molecular Motor that Rotates with Discrete 120° Steps , 1998, Cell.
[3] P. Boyer. The ATP synthase--a splendid molecular machine. , 1997, Annual review of biochemistry.
[4] Martin Karplus,et al. How subunit coupling produces the γ-subunit rotary motion in F1-ATPase , 2008, Proceedings of the National Academy of Sciences.
[5] Jianhua Xing,et al. Making ATP. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[6] Jan Pieter Abrahams,et al. Structure at 2.8 Â resolution of F1-ATPase from bovine heart mitochondria , 1994, Nature.
[7] W. Junge,et al. ATP synthase: an electrochemical transducer with rotatory mechanics. , 1997, Trends in biochemical sciences.
[8] Hiroyasu Itoh,et al. Rotation of F1-ATPase: how an ATP-driven molecular machine may work. , 2004, Annual review of biophysics and biomolecular structure.
[9] P. Kollman,et al. Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models , 1992 .
[10] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[11] Ilya A. Balabin,et al. Insights into the molecular mechanism of rotation in the Fo sector of ATP synthase. , 2004, Biophysical journal.
[12] Helmut Grubmüller,et al. Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase , 2002, Nature Structural Biology.
[13] A. Mulkidjanian,et al. Transient accumulation of elastic energy in proton translocating ATP synthase , 1999, FEBS letters.
[14] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[15] Hendrik Sielaff,et al. Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalk , 2011, Proceedings of the National Academy of Sciences.
[16] George Oster,et al. Energy transduction in the F1 motor of ATP synthase , 1998, Nature.
[17] Klaus Schulten,et al. ATP Hydrolysis in the βTP and βDP Catalytic Sites of F1-ATPase , 2004 .
[18] Berk Hess,et al. P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation. , 2008, Journal of chemical theory and computation.
[19] Jianpeng Ma,et al. A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase. , 2004, Journal of molecular biology.
[20] M. Parrinello,et al. Polymorphic transitions in single crystals: A new molecular dynamics method , 1981 .
[21] M Karplus,et al. The missing link between thermodynamics and structure in F1-ATPase , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[22] Hendrik Sielaff,et al. Torque generation and elastic power transmission in the rotary FOF1-ATPase , 2009, Nature.
[23] K. Dill,et al. Hydrogen bonding in globular proteins. , 1992, Journal of molecular biology.
[24] R. Friesner,et al. Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides† , 2001 .
[25] Kazuhiko Kinosita,et al. Direct observation of the rotation of F1-ATPase , 1997, Nature.
[26] Wei Yang,et al. A Structure-Based Model for the Synthesis and Hydrolysis of ATP by F1-ATPase , 2005, Cell.
[27] A G Leslie,et al. Molecular architecture of the rotary motor in ATP synthase. , 1999, Science.
[28] H. Berendsen,et al. Molecular dynamics with coupling to an external bath , 1984 .
[29] Grubmüller,et al. Predicting slow structural transitions in macromolecular systems: Conformational flooding. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[30] Andrew G. W. Leslie,et al. The structure of the central stalk in bovine F1-ATPase at 2.4 Å resolution , 2000, Nature Structural Biology.
[31] S. Nosé. A unified formulation of the constant temperature molecular dynamics methods , 1984 .
[32] Carsten Kutzner,et al. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.
[33] W. Junge,et al. Viscoelastic dynamics of actin filaments coupled to rotary F-ATPase: angular torque profile of the enzyme. , 2001, Biophysical journal.
[34] Michael Börsch,et al. 36° step size of proton‐driven c‐ring rotation in FoF1‐ATP synthase , 2009, The EMBO journal.
[35] Hendrik Sielaff,et al. Domain compliance and elastic power transmission in rotary FOF1-ATPase , 2008, Proceedings of the National Academy of Sciences.
[36] Bert L. de Groot,et al. tCONCOORD‐GUI: Visually supported conformational sampling of bioactive molecules , 2009, J. Comput. Chem..
[37] Masasuke Yoshida,et al. Axle-Less F1-ATPase Rotates in the Correct Direction , 2008, Science.
[38] T. Darden,et al. A smooth particle mesh Ewald method , 1995 .
[39] A. Dautant,et al. Crystal Structure of the Mg·ADP-inhibited State of the Yeast F1c10-ATP Synthase* , 2010, The Journal of Biological Chemistry.