Absolute and relative binding affinity of cucurbit[7]uril towards a series of cationic guests

We determined the relative binding constants (Krel) for guests 1–19 towards cucurbit[7]uril by 1H NMR competition experiments in 100 mM Na3PO4-buffered D2O. In these experiments, we use guest 11 as the reference guest because of its strong binding towards CB[7] and its advantageous spectroscopic properties (e.g. slow exchange on NMR timescale and distinct resonances for key protons). To convert the determined Krel values to absolute binding constants, we performed a direct UV–vis titration of 1 with CB[7] to determine Ka for CB[7]√1. The trends in the determined values of Krel and Ka are discussed with respect to the importance of the concentration of metal ions in the buffer, the influence of hydroxyl groups located at the portals or inside the CB[7] cavity, geometry of the guest (e.g. regioisomers), the number of guest C atoms and secondary electrostatic interactions.

[1]  Ian W. Wyman,et al.  Host-guest complexations of local anaesthetics by cucurbit[7]uril in aqueous solution. , 2010, Organic & biomolecular chemistry.

[2]  F. Diederich,et al.  Modern Supramolecular Chemistry: Strategies for Macrocycle Synthesis , 2008 .

[3]  Y. Ko,et al.  Complexation of aliphatic ammonium ions with a water-soluble cucurbit[6]uril derivative in pure water: isothermal calorimetric, NMR, and X-ray crystallographic study. , 2009, Chemistry.

[4]  Yoshihisa Inoue,et al.  Complexation Thermodynamics of Cucurbit[6]uril with Aliphatic Alcohols, Amines, and Diamines , 2007 .

[5]  Lyle Isaacs,et al.  Acyclic cucurbit[n]uril molecular containers enhance the solubility and bioactivity of poorly soluble pharmaceuticals , 2012, Nature Chemistry.

[6]  S. Ryu,et al.  Supramolecular fishing for plasma membrane proteins using an ultrastable synthetic host-guest binding pair. , 2011, Nature chemistry.

[7]  Michael K Gilson,et al.  New ultrahigh affinity host-guest complexes of cucurbit[7]uril with bicyclo[2.2.2]octane and adamantane guests: thermodynamic analysis and evaluation of M2 affinity calculations. , 2011, Journal of the American Chemical Society.

[8]  W. L. Mock,et al.  Dynamics of molecular recognition involving cucurbituril , 1989 .

[9]  Eunju Kim,et al.  Supramolecular assemblies built with host-stabilized charge-transfer interactions. , 2007, Chemical communications.

[10]  W. Nau,et al.  Strong binding of hydrocarbons to cucurbituril probed by fluorescent dye displacement: a supramolecular gas-sensing ensemble. , 2011, Angewandte Chemie.

[11]  Soumyadip Ghosh,et al.  Acyclic cucurbituril congener binds to local anaesthetics , 2012 .

[12]  Oren A Scherman,et al.  Release of high-energy water as an essential driving force for the high-affinity binding of cucurbit[n]urils. , 2012, Journal of the American Chemical Society.

[13]  Matthias Eikermann,et al.  Acyclic cucurbit[n]uril-type molecular containers bind neuromuscular blocking agents in vitro and reverse neuromuscular block in vivo. , 2012, Angewandte Chemie.

[14]  L. Isaacs,et al.  Cucurbit[7]uril complexation drives thermal trans-cis-azobenzene isomerization and enables colorimetric amine detection. , 2009, Chemistry.

[15]  Tsuyoshi Minami,et al.  Templated synthesis of glycoluril hexamer and monofunctionalized cucurbit[6]uril derivatives. , 2011, Journal of the American Chemical Society.

[16]  Lyle Isaacs,et al.  The cucurbit[n]uril family: prime components for self-sorting systems. , 2005, Journal of the American Chemical Society.

[17]  W. Nau,et al.  Deep Inside Cucurbiturils: Physical Properties and Volumes of their Inner Cavity Determine the Hydrophobic Driving Force for Host–Guest Complexation , 2011 .

[18]  W. L. Mock,et al.  Structure and selectivity in host―guest complexes of cucurbituril , 1986 .

[19]  W. Nau,et al.  The strategic use of supramolecular pK(a) shifts to enhance the bioavailability of drugs. , 2012, Advanced drug delivery reviews.

[20]  Kimoon Kim,et al.  Supramolecular velcro for reversible underwater adhesion. , 2013, Angewandte Chemie.

[21]  Donal H. Macartney,et al.  Encapsulation of Drug Molecules by Cucurbiturils: Effects on their Chemical Properties in Aqueous Solution , 2011 .

[22]  A. Kaifer,et al.  Complexation of ferrocene derivatives by the cucurbit[7]uril host: a comparative study of the cucurbituril and cyclodextrin host families. , 2005, Journal of the American Chemical Society.

[23]  Michael K. Gilson,et al.  A synthetic host-guest system achieves avidin-biotin affinity by overcoming enthalpy–entropy compensation , 2007, Proceedings of the National Academy of Sciences.

[24]  Michael K. Gilson,et al.  Blind prediction of host–guest binding affinities: a new SAMPL3 challenge , 2012, Journal of Computer-Aided Molecular Design.

[25]  P. Zavalij,et al.  Cucurbit[n]uril formation proceeds by step-growth cyclo-oligomerization. , 2008, Journal of the American Chemical Society.

[26]  W. L. Mock,et al.  A cucurbituril-based molecular switch , 1990 .

[27]  Lyle Isaacs,et al.  Acyclic cucurbit[n]uril congeners are high affinity hosts. , 2010, The Journal of organic chemistry.