Pinpointing disease genes through phenomic and genomic data fusion
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[1] Roded Sharan,et al. Associating Genes and Protein Complexes with Disease via Network Propagation , 2010, PLoS Comput. Biol..
[2] De novo mutations in epileptic encephalopathies , 2013 .
[3] Alan F. Scott,et al. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders , 2002, Nucleic Acids Res..
[4] Rui Jiang,et al. Constructing a gene semantic similarity network for the inference of disease genes , 2011, BMC Systems Biology.
[5] G. Vriend,et al. A text-mining analysis of the human phenome , 2006, European Journal of Human Genetics.
[6] Rodrigo Lopez,et al. PSI-Search: iterative HOE-reduced profile SSEARCH searching , 2012, Bioinform..
[7] Bassem A. Hassan,et al. Gene prioritization through genomic data fusion , 2006, Nature Biotechnology.
[8] Baris E. Suzek,et al. The Universal Protein Resource (UniProt) in 2010 , 2009, Nucleic Acids Res..
[9] Qifang Liu,et al. Align human interactome with phenome to identify causative genes and networks underlying disease families , 2009, Bioinform..
[10] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[11] María Martín,et al. The Universal Protein Resource (UniProt) in 2010 , 2010 .
[12] Tao Jiang,et al. Uncover disease genes by maximizing information flow in the phenome–interactome network , 2011, Bioinform..
[13] Barbara Heude,et al. Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations , 2009, Nature Genetics.
[14] M. Daly,et al. Guilt by association , 2000, Nature Genetics.
[15] Mingxin Gan. Correlating Information Contents of Gene Ontology Terms to Infer Semantic Similarity of Gene Products , 2014, Comput. Math. Methods Medicine.
[16] P. Robinson,et al. Walking the interactome for prioritization of candidate disease genes. , 2008, American journal of human genetics.
[17] Michael Q. Zhang,et al. Network-based global inference of human disease genes , 2008, Molecular systems biology.
[18] Jan Freudenberg,et al. A similarity-based method for genome-wide prediction of disease-relevant human genes , 2002, ECCB.
[19] John D. Storey. The positive false discovery rate: a Bayesian interpretation and the q-value , 2003 .
[20] Pall I. Olason,et al. A human phenome-interactome network of protein complexes implicated in genetic disorders , 2007, Nature Biotechnology.
[21] Natalie Wilson,et al. Human Protein Reference Database , 2004, Nature Reviews Molecular Cell Biology.
[22] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[23] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[24] James J. Yang. Distribution of Fisher's combination statistic when the tests are dependent , 2010 .
[25] B. Snel,et al. STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. , 2000, Nucleic acids research.
[26] S. Batalov,et al. A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[27] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[28] David J. Porteous,et al. Speeding disease gene discovery by sequence based candidate prioritization , 2005, BMC Bioinformatics.
[29] P. Bork,et al. Association of genes to genetically inherited diseases using data mining , 2002, Nature Genetics.
[30] Jagdish Chandra Patra,et al. Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network , 2010, Bioinform..
[31] Alexander E. Kel,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[32] J. Shendure,et al. Exome sequencing as a tool for Mendelian disease gene discovery , 2011, Nature Reviews Genetics.
[33] D. Lindberg,et al. Unified Medical Language System , 2020, Definitions.
[34] Frances S. Turner,et al. POCUS: mining genomic sequence annotation to predict disease genes , 2003, Genome Biology.
[35] Junjun Zhang,et al. BioMart Central Portal—unified access to biological data , 2009, Nucleic Acids Res..
[36] H. Stefánsson,et al. Genetics of gene expression and its effect on disease , 2008, Nature.
[37] Sandhya Rani,et al. Human Protein Reference Database—2009 update , 2008, Nucleic Acids Res..
[38] D. Botstein,et al. Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease , 2003, Nature Genetics.
[39] Alan R. Powell,et al. Integration of text- and data-mining using ontologies successfully selects disease gene candidates , 2005, Nucleic acids research.
[40] C. Ouzounis,et al. Genome-wide identification of genes likely to be involved in human genetic disease. , 2004, Nucleic acids research.
[41] Alan R. Aronson,et al. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program , 2001, AMIA.
[42] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..