Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses
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Polly M Fordyce | Hana El-Samad | Peter Walter | Joseph L DeRisi | D. Pincus | J. Derisi | H. El-Samad | P. Walter | P. Fordyce | Christopher S Nelson | P. Kimmig | David Pincus | Philipp Kimmig | Philipp Kimmig | David Pincus
[1] J. Sambrook,et al. A 22 bp cis‐acting element is necessary and sufficient for the induction of the yeast KAR2 (BiP) gene by unfolded proteins. , 1992, The EMBO journal.
[2] K. Struhl,et al. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted α Helices: Crystal structure of the protein-DNA complex , 1992, Cell.
[3] J. Sambrook,et al. The promoter region of the yeast KAR2 (BiP) gene contains a regulatory domain that responds to the presence of unfolded proteins in the endoplasmic reticulum , 1993, Molecular and cellular biology.
[4] V. Berlin,et al. The FKB2 gene of Saccharomyces cerevisiae, encoding the immunosuppressant-binding protein FKBP-13, is regulated in response to accumulation of unfolded proteins in the endoplasmic reticulum. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[5] P. Walter,et al. The Unfolded- Protein-response Pathway in Yeast , 2022 .
[6] T. Richmond,et al. Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition. , 1995, Journal of molecular biology.
[7] K. Mori,et al. Signalling from endoplasmic reticulum to nucleus: transcription factor with a basic‐leucine zipper motif is required for the unfolded protein‐response pathway , 1996, Genes to cells : devoted to molecular & cellular mechanisms.
[8] P. Walter,et al. A Novel Mechanism for Regulating Activity of a Transcription Factor That Controls the Unfolded Protein Response , 1996, Cell.
[9] K. Mori,et al. Palindrome with Spacer of One Nucleotide Is Characteristic of thecis-Acting Unfolded Protein Response Element inSaccharomyces cerevisiae * , 1998, The Journal of Biological Chemistry.
[10] P. Walter,et al. Intracellular signaling from the endoplasmic reticulum to the nucleus. , 1998, Annual review of cell and developmental biology.
[11] Toshio Hakoshima,et al. Structural basis for the diversity of DNA recognition by bZIP transcription factors , 2000, Nature Structural Biology.
[12] Peter Walter,et al. Functional and Genomic Analyses Reveal an Essential Coordination between the Unfolded Protein Response and ER-Associated Degradation , 2000, Cell.
[13] M. Schumacher,et al. The Structure of a CREB bZIP·Somatostatin CRE Complex Reveals the Basis for Selective Dimerization and Divalent Cation-enhanced DNA Binding* , 2000, The Journal of Biological Chemistry.
[14] P. Walter,et al. Block of HAC1 mRNA Translation by Long-Range Base Pairing Is Released by Cytoplasmic Splicing upon Induction of the Unfolded Protein Response , 2001, Cell.
[15] Maria Miller,et al. Structural Basis for DNA Recognition by the Basic Region Leucine Zipper Transcription Factor CCAAT/Enhancer-binding Protein α* , 2003, The Journal of Biological Chemistry.
[16] Peter Walter,et al. Gcn4p and Novel Upstream Activating Sequences Regulate Targets of the Unfolded Protein Response , 2004, PLoS biology.
[17] Barrett C. Foat,et al. Profiling condition-specific, genome-wide regulation of mRNA stability in yeast. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[18] A. Fedorova,et al. The GCN4 bZIP can bind to noncognate gene regulatory sequences. , 2006, Biochimica et biophysica acta.
[19] A. Philippakis,et al. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities , 2006, Nature Biotechnology.
[20] Alexandre V. Morozov,et al. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE , 2006, ISMB.
[21] Hao Li,et al. fREDUCE: Detection of degenerate regulatory elements using correlation with expression , 2007, BMC Bioinformatics.
[22] S. Quake,et al. A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors , 2007, Science.
[23] Christopher L. Warren,et al. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. , 2008, Molecular cell.
[24] K. Yamamoto,et al. DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity , 2009, Science.
[25] Daniel E. Newburger,et al. High-resolution DNA-binding specificity analysis of yeast transcription factors. , 2009, Genome research.
[26] Maria Miller. The importance of being flexible: the case of basic region leucine zipper transcriptional regulators. , 2009, Current protein & peptide science.
[27] Masayuki Yamamoto,et al. Structural Basis of Alternative DNA Recognition by Maf Transcription Factors , 2009, Molecular and Cellular Biology.
[28] Daniel E. Newburger,et al. Diversity and Complexity in DNA Recognition by Transcription Factors , 2009, Science.
[29] John C Chaput,et al. Random mutagenesis by error-prone PCR. , 2010, Methods in molecular biology.
[30] S. Quake,et al. De Novo Identification and Biophysical Characterization of Transcription Factor Binding Sites with Microfluidic Affinity Analysis , 2010, Nature Biotechnology.
[31] A. Saito,et al. The signalling from endoplasmic reticulum-resident bZIP transcription factors involved in diverse cellular physiology. , 2011, Journal of biochemistry.
[32] S. Luo,et al. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument , 2011, Nature Biotechnology.
[33] Raluca Gordân,et al. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights , 2011, Genome Biology.
[34] Hana El-Samad,et al. Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae. , 2012, Molecular cell.