Dynamics of Autophagosome Formation1[OPEN]

Environmental stress activates autophagy and leads to autophagosome formation at the endoplasmic reticulum.

[1]  D. Bassham,et al.  New advances in autophagy in plants: Regulation, selectivity and function. , 2017, Seminars in cell & developmental biology.

[2]  D. Bassham,et al.  SnRK1 activates autophagy via the TOR signaling pathway in Arabidopsis thaliana , 2017, PloS one.

[3]  D. Bassham,et al.  TOR-Dependent and -Independent Pathways Regulate Autophagy in Arabidopsis thaliana , 2017, Front. Plant Sci..

[4]  S. Xiao,et al.  The AMP-Activated Protein Kinase KIN10 Is Involved in the Regulation of Autophagy in Arabidopsis , 2017, Front. Plant Sci..

[5]  Yan Wang,et al.  Plant Bax Inhibitor-1 interacts with ATG6 to regulate autophagy and programmed cell death , 2017, Autophagy.

[6]  Bernadette Carroll,et al.  The lysosome: a crucial hub for AMPK and mTORC1 signalling. , 2017, The Biochemical journal.

[7]  R. Dominguez,et al.  The Cytoskeleton–Autophagy Connection , 2017, Current Biology.

[8]  Yasin F. Dagdas,et al.  ATG8 Expansion: A Driver of Selective Autophagy Diversification? , 2017, Trends in plant science.

[9]  D. Hofius,et al.  Selective autophagy limits cauliflower mosaic virus infection by NBR1-mediated targeting of viral capsid protein and particles , 2017, Proceedings of the National Academy of Sciences.

[10]  Hiroyuki Ishida,et al.  Entire Photodamaged Chloroplasts Are Transported to the Central Vacuole by Autophagy[OPEN] , 2017, Plant Cell.

[11]  Liwen Jiang,et al.  ATG9 regulates autophagosome progression from the endoplasmic reticulum in Arabidopsis , 2017, Proceedings of the National Academy of Sciences.

[12]  D. Klionsky,et al.  Autophagy: machinery and regulation , 2016, Microbial cell.

[13]  T. Nägele,et al.  Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation , 2016, Scientific Reports.

[14]  L. Collinson,et al.  Autophagy initiation by ULK complex assembly on ER tubulovesicular regions marked by ATG9 vesicles , 2016, Nature Communications.

[15]  P. Hussey,et al.  Arabidopsis NAP1 Regulates the Formation of Autophagosomes , 2016, Current Biology.

[16]  Miguel González-Guzmán,et al.  FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway , 2016, Plant Cell.

[17]  S. Howell,et al.  Managing the protein folding demands in the endoplasmic reticulum of plants. , 2016, The New phytologist.

[18]  Caiji Gao,et al.  Biogenesis of Plant Prevacuolar Multivesicular Bodies. , 2016, Molecular plant.

[19]  L. Romero,et al.  Negative Regulation of Autophagy by Sulfide Is Independent of Reactive Oxygen Species1 , 2016, Plant Physiology.

[20]  T. Wollert,et al.  The Atg1–kinase complex tethers Atg9-vesicles to initiate autophagy , 2016, Nature Communications.

[21]  S. Howell,et al.  Activation of autophagy by unfolded proteins during endoplasmic reticulum stress. , 2016, The Plant journal : for cell and molecular biology.

[22]  Caiji Gao,et al.  Endocytic and autophagic pathways crosstalk in plants. , 2015, Current opinion in plant biology.

[23]  J. Sheen,et al.  Novel links in the plant TOR kinase signaling network. , 2015, Current opinion in plant biology.

[24]  S. Xiao,et al.  Autophagy contributes to regulation of the hypoxia response during submergence in Arabidopsis thaliana , 2015, Autophagy.

[25]  Yan Wang,et al.  Disruption of microtubules in plants suppresses macroautophagy and triggers starch excess-associated chloroplast autophagy , 2015, Autophagy.

[26]  Jie Zhou,et al.  Tomato HsfA1a plays a critical role in plant drought tolerance by activating ATG genes and inducing autophagy , 2015, Autophagy.

[27]  S. Zhong,et al.  Fast-suppressor screening for new components in protein trafficking, organelle biogenesis and silencing pathway in Arabidopsis thaliana using DEX-inducible FREE1-RNAi plants. , 2015, Journal of genetics and genomics = Yi chuan xue bao.

[28]  Georgia Drakakaki,et al.  Beyond Glycolysis: GAPDHs Are Multi-functional Enzymes Involved in Regulation of ROS, Autophagy, and Plant Immune Responses , 2015, PLoS genetics.

[29]  Yan Wang,et al.  Cytoplastic Glyceraldehyde-3-Phosphate Dehydrogenases Interact with ATG3 to Negatively Regulate Autophagy and Immunity in Nicotiana benthamiana , 2015, Plant Cell.

[30]  M. Zhang,et al.  The Endosomal Protein CHARGED MULTIVESICULAR BODY PROTEIN1 Regulates the Autophagic Turnover of Plastids in Arabidopsis , 2015, Plant Cell.

[31]  Liwen Jiang,et al.  Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation , 2015, Proceedings of the National Academy of Sciences.

[32]  H. Pai,et al.  Overexpression of the PP2A regulatory subunit Tap46 leads to enhanced plant growth through stimulation of the TOR signalling pathway , 2014, Journal of experimental botany.

[33]  D. Bassham,et al.  New Insight into the Mechanism and Function of Autophagy in Plant Cells. , 2015, International review of cell and molecular biology.

[34]  Jun Xia,et al.  A Unique Plant ESCRT Component, FREE1, Regulates Multivesicular Body Protein Sorting and Plant Growth , 2014, Current Biology.

[35]  G. Galili,et al.  Arabidopsis ATG8-INTERACTING PROTEIN1 Is Involved in Autophagy-Dependent Vesicular Trafficking of Plastid Proteins to the Vacuole[W][OPEN] , 2014, Plant Cell.

[36]  J. Marion,et al.  ATG5 defines a phagophore domain connected to the endoplasmic reticulum during autophagosome formation in plants , 2014, Nature Communications.

[37]  Zvulun Elazar,et al.  Endocytosis and autophagy: exploitation or cooperation? , 2014, Cold Spring Harbor perspectives in biology.

[38]  G. Galili,et al.  Degradation of Organelles or Specific Organelle Components via Selective Autophagy in Plant Cells , 2014, International journal of molecular sciences.

[39]  Jie Zhou,et al.  Role and regulation of autophagy in heat stress responses of tomato plants , 2014, Front. Plant Sci..

[40]  A. Sirko,et al.  Selective autophagy receptor Joka2 co-localizes with cytoskeleton in plant cells , 2014, Plant signaling & behavior.

[41]  Américo Rodrigues,et al.  Mechanisms of regulation of SNF1/AMPK/SnRK1 protein kinases , 2014, Front. Plant Sci..

[42]  V. Žárský,et al.  The exocyst at the interface between cytoskeleton and membranes in eukaryotic cells , 2014, Front. Plant Sci..

[43]  P. Trost,et al.  Plant cytoplasmic GAPDH: redox post-translational modifications and moonlighting properties , 2013, Front. Plant Sci..

[44]  T. Yoshimori,et al.  The autophagosome: origins unknown, biogenesis complex , 2013, Nature Reviews Molecular Cell Biology.

[45]  M. Höftberger,et al.  Arabidopsis Exocyst Subcomplex Containing Subunit EXO70B1 Is Involved in Autophagy‐Related Transport to the Vacuole , 2013, Traffic.

[46]  F. Brandizzi,et al.  IRE1: ER stress sensor and cell fate executor. , 2013, Trends in cell biology.

[47]  Caiji Gao,et al.  A BAR-Domain Protein SH3P2, Which Binds to Phosphatidylinositol 3-Phosphate and ATG8, Regulates Autophagosome Formation in Arabidopsis[C][W] , 2013, Plant Cell.

[48]  A. Papini,et al.  Ultrastructure of autophagy in plant cells , 2013, Autophagy.

[49]  C. Schwechheimer,et al.  The Deubiquitinating Enzyme AMSH1 and the ESCRT-III Subunit VPS2.1 Are Required for Autophagic Degradation in Arabidopsis[C][W][OPEN] , 2013, Plant Cell.

[50]  Yan Wang,et al.  Autophagy Contributes to Leaf Starch Degradation[C][W] , 2013, Plant Cell.

[51]  S. Kwon,et al.  The Rab GTPase RabG3b Positively Regulates Autophagy and Immunity-Associated Hypersensitive Cell Death in Arabidopsis1[W] , 2013, Plant Physiology.

[52]  Jie Zhou,et al.  NBR1-Mediated Selective Autophagy Targets Insoluble Ubiquitinated Protein Aggregates in Plant Stress Responses , 2013, PLoS genetics.

[53]  N. Hayashi,et al.  Atg9 Vesicles Recruit Vesicle-tethering Proteins Trs85 and Ypt1 to the Autophagosome Formation Site* , 2012, The Journal of Biological Chemistry.

[54]  D. Bassham,et al.  What to eat: evidence for selective autophagy in plants. , 2012, Journal of integrative plant biology.

[55]  S. Howell,et al.  Degradation of the Endoplasmic Reticulum by Autophagy during Endoplasmic Reticulum Stress in Arabidopsis[C][W] , 2012, Plant Cell.

[56]  J. Crespo,et al.  Cysteine-Generated Sulfide in the Cytosol Negatively Regulates Autophagy and Modulates the Transcriptional Profile in Arabidopsis[W] , 2012, Plant Cell.

[57]  Rie Ichikawa,et al.  Atg9 vesicles are an important membrane source during early steps of autophagosome formation , 2012, The Journal of cell biology.

[58]  L. Collinson,et al.  Dynamic and transient interactions of Atg9 with autophagosomes, but not membrane integration, are required for autophagy , 2012, Molecular biology of the cell.

[59]  D. Bassham,et al.  Autophagy: pathways for self-eating in plant cells. , 2012, Annual review of plant biology.

[60]  Santiago,et al.  IRE1/bZIP60-Mediated Unfolded Protein Response Plays Distinct Roles in Plant Immunity and Abiotic Stress Responses , 2012, PloS one.

[61]  M. Martin-Magniette,et al.  Mutations in the Arabidopsis Homolog of LST8/GβL, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days[C][W] , 2012, Plant Cell.

[62]  J. Crespo,et al.  Cysteine-Generated Sul fi de in the Cytosol Negatively Regulates Autophagy and Modulates the Transcriptional Pro fi le in Arabidopsis , 2012 .

[63]  R. Vierstra,et al.  The ATG1/ATG13 Protein Kinase Complex Is Both a Regulator and a Target of Autophagic Recycling in Arabidopsis[C][W] , 2011, Plant Cell.

[64]  D. Hardie AMP-activated protein kinase: an energy sensor that regulates all aspects of cell function. , 2011, Genes & development.

[65]  K. Mishiba,et al.  Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor , 2011, Scientific reports.

[66]  B. Fan,et al.  A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. , 2011, The Plant journal : for cell and molecular biology.

[67]  Z. Pei,et al.  Hydrogen sulphide enhances photosynthesis through promoting chloroplast biogenesis, photosynthetic enzyme expression, and thiol redox modification in Spinacia oleracea seedlings , 2011, Journal of experimental botany.

[68]  S. Rothstein,et al.  Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis , 2011, Proceedings of the National Academy of Sciences.

[69]  B. Viollet,et al.  AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1 , 2011, Nature Cell Biology.

[70]  B. Viollet,et al.  Phosphorylation of ULK1 (hATG1) by AMP-Activated Protein Kinase Connects Energy Sensing to Mitophagy , 2011, Science.

[71]  Prakash Venglat,et al.  Target of Rapamycin Regulates Development and Ribosomal RNA Expression through Kinase Domain in Arabidopsis1[W][OA] , 2011, Plant Physiology.

[72]  J. Han,et al.  The PP2A Regulatory Subunit Tap46, a Component of the TOR Signaling Pathway, Modulates Growth and Metabolism in Plants[W] , 2011, Plant Cell.

[73]  C. García-Mata,et al.  Hydrogen sulphide, a novel gasotransmitter involved in guard cell signalling. , 2010, The New phytologist.

[74]  Hong-Gang Wang,et al.  The Association of AMPK with ULK1 Regulates Autophagy , 2010, PloS one.

[75]  D. Bassham,et al.  TOR Is a Negative Regulator of Autophagy in Arabidopsis thaliana , 2010, PloS one.

[76]  Russell L. Jones,et al.  Hydrogen sulfide alleviates aluminum toxicity in germinating wheat seedlings. , 2010, Journal of integrative plant biology.

[77]  N. Mizushima,et al.  The role of the Atg1/ULK1 complex in autophagy regulation. , 2010, Current opinion in cell biology.

[78]  Wen‐Hao Zhang,et al.  Boron toxicity is alleviated by hydrogen sulfide in cucumber (Cucumis sativus L.) seedlings , 2010, Planta.

[79]  N. Oshiro,et al.  Tor Directly Controls the Atg1 Kinase Complex To Regulate Autophagy , 2009, Molecular and Cellular Biology.

[80]  L. Romero,et al.  An O-Acetylserine(thiol)lyase Homolog with l-Cysteine Desulfhydrase Activity Regulates Cysteine Homeostasis in Arabidopsis1[C][W] , 2009, Plant Physiology.

[81]  D. Bassham,et al.  Autophagy is required for tolerance of drought and salt stress in plants , 2009, Autophagy.

[82]  S. Hawley,et al.  SnRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling in Arabidopsis thaliana. , 2009, The Plant journal : for cell and molecular biology.

[83]  Yoshiaki Kamada,et al.  Dynamics and diversity in autophagy mechanisms: lessons from yeast , 2009, Nature Reviews Molecular Cell Biology.

[84]  Chao Zhang,et al.  The unfolded protein response signals through high-order assembly of Ire1 , 2009, Nature.

[85]  Jian-ping Luo,et al.  Hydrogen sulfide promotes wheat seed germination and alleviates oxidative damage against copper stress. , 2008, Journal of integrative plant biology.

[86]  Gareth Griffiths,et al.  Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum , 2008, The Journal of cell biology.

[87]  J. Crespo,et al.  The role of TOR in autophagy regulation from yeast to plants and mammals , 2008, Autophagy.

[88]  K. Yoshimoto,et al.  Mobilization of Rubisco and Stroma-Localized Fluorescent Proteins of Chloroplasts to the Vacuole by an ATG Gene-Dependent Autophagic Process1[W][OA] , 2008, Plant Physiology.

[89]  T. Noda,et al.  The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. , 2008, Molecular biology of the cell.

[90]  S. Pattingre,et al.  Regulation of macroautophagy by mTOR and Beclin 1 complexes. , 2008, Biochimie.

[91]  R. Stroud,et al.  The unfolded protein response signals through high-order assembly of Ire 1 , 2008 .

[92]  R. Sormani,et al.  The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation , 2007, EMBO reports.

[93]  Filip Rolland,et al.  A central integrator of transcription networks in plant stress and energy signalling , 2007, Nature.

[94]  YongSung Kim,et al.  ATG1, an autophagy regulator, inhibits cell growth by negatively regulating S6 kinase , 2007, EMBO reports.

[95]  K. Yoshimoto,et al.  An Arabidopsis Homolog of Yeast ATG6/VPS30 Is Essential for Pollen Germination1[W] , 2007, Plant Physiology.

[96]  D. Bassham,et al.  Degradation of Oxidized Proteins by Autophagy during Oxidative Stress in Arabidopsis1[W][OA] , 2006, Plant Physiology.

[97]  T. Mengiste,et al.  Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. , 2006, The Plant journal : for cell and molecular biology.

[98]  D. Verma,et al.  Arabidopsis TARGET OF RAPAMYCIN Interacts with RAPTOR, Which Regulates the Activity of S6 Kinase in Response to Osmotic Stress Signals , 2005, The Plant Cell Online.

[99]  Kirk Czymmek,et al.  Autophagy Regulates Programmed Cell Death during the Plant Innate Immune Response , 2005, Cell.

[100]  D. Klionsky,et al.  Atg9 Cycles Between Mitochondria and the Pre-Autophagosomal Structure in Yeasts , 2005, Autophagy.

[101]  B. Veit,et al.  The Arabidopsis AtRaptor genes are essential for post-embryonic plant growth , 2005, BMC Biology.

[102]  N. Koizumi,et al.  An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[103]  H. Truong,et al.  An Arabidopsis homolog of RAPTOR/KOG1 is essential for early embryo development. , 2005, Biochemical and biophysical research communications.

[104]  P. Hussey,et al.  Arabidopsis homologues of the autophagy protein Atg8 are a novel family of microtubule binding proteins , 2004, FEBS letters.

[105]  N. Raikhel,et al.  The VTI Family of SNARE Proteins Is Necessary for Plant Viability and Mediates Different Protein Transport Pathways Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.016121. , 2003, The Plant Cell Online.

[106]  R. Vierstra,et al.  The APG8/12-activating Enzyme APG7 Is Required for Proper Nutrient Recycling and Senescence in Arabidopsis thaliana * , 2002, The Journal of Biological Chemistry.

[107]  J. Avruch,et al.  Raptor, a Binding Partner of Target of Rapamycin (TOR), Mediates TOR Action , 2002, Cell.

[108]  D. Shibata,et al.  Leaf Senescence and Starvation-Induced Chlorosis Are Accelerated by the Disruption of an Arabidopsis Autophagy Gene1 , 2002, Plant Physiology.

[109]  F. Berger,et al.  Expression and disruption of the Arabidopsis TOR (target of rapamycin) gene , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[110]  Y. Kimata,et al.  Molecular characterization of two Arabidopsis Ire1 homologs, endoplasmic reticulum-located transmembrane protein kinases. , 2001, Plant physiology.

[111]  P. Roach,et al.  Antagonistic Controls of Autophagy and Glycogen Accumulation by Snf1p, the Yeast Homolog of AMP-Activated Protein Kinase, and the Cyclin-Dependent Kinase Pho85p , 2001, Molecular and Cellular Biology.

[112]  Kazuya Nagano,et al.  Tor-Mediated Induction of Autophagy via an Apg1 Protein Kinase Complex , 2000, The Journal of cell biology.

[113]  D. Hardie,et al.  Regulation of spinach SNF1-related (SnRK1) kinases by protein kinases and phosphatases is associated with phosphorylation of the T loop and is regulated by 5'-AMP. , 1999, The Plant journal : for cell and molecular biology.

[114]  N. Leborgne-Castel,et al.  Overexpression of BiP in Tobacco Alleviates Endoplasmic Reticulum Stress , 1999, Plant Cell.

[115]  Takeshi Noda,et al.  Tor, a Phosphatidylinositol Kinase Homologue, Controls Autophagy in Yeast* , 1998, The Journal of Biological Chemistry.

[116]  P. Walter,et al.  A Novel Mechanism for Regulating Activity of a Transcription Factor That Controls the Unfolded Protein Response , 1996, Cell.

[117]  K. Mori,et al.  Signalling from endoplasmic reticulum to nucleus: transcription factor with a basic‐leucine zipper motif is required for the unfolded protein‐response pathway , 1996, Genes to cells : devoted to molecular & cellular mechanisms.

[118]  D. Klionsky,et al.  Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway , 1995, The Journal of cell biology.

[119]  M. Schlumpberger,et al.  Isolation of autophagocytosis mutants of Saccharomyces cerevisiae , 1994, FEBS letters.

[120]  Y. Ohsumi,et al.  Isolation and characterization of autophagy‐defective mutants of Saccharomyces cerevisiae , 1993, FEBS letters.