CAFR-CNN: coarse-to-fine adaptive faster R-CNN for cross-domain joint optic disc and cup segmentation

Glaucoma is a leading cause of blindness. Accurate and efficient segmentation of the optic disc and cup from fundus images is important for glaucoma screening. However, using off-the-shelf networks against new datasets may lead to degraded performances due to domain shift. To address this issue, in this paper, we propose a coarse-to-fine adaptive Faster R-CNN framework for cross-domain joint optic disc and cup segmentation. The proposed CAFR-CNN consists of the Faster R-CNN detector, a spatial attention-based region alignment module, a pyramid ROI alignment module and a prototype-based semantic alignment module. The Faster R-CNN detector extracts features from fundus images using a VGG16 network as a backbone. The spatial attention-based region alignment module extracts the region of interest through a spatial mechanism and aligns the feature distribution from different domains via multilayer adversarial learning to achieve a coarse-grained adaptation. The pyramid ROI alignment module learns multilevel contextual features to prevent misclassifications due to the similar appearances of the optic disc and cup. The prototype-based semantic alignment module minimizes the distance of global prototypes with the same category between the target domain and source domain to achieve a fine-grained adaptation. We evaluated the proposed CAFR-CNN framework under different scenarios constructed from four public retinal fundus image datasets (REFUGE2, DRISHTI-GS, DRIONS-DB and RIM-ONE-r3). The experimental results show that the proposed method outperforms the current state-of-the-art methods and has good accuracy and robustness: it not only avoids the adverse effects of low contrast and noise interference but also preserves the shape priors and generates more accurate contours.

[1]  Hao Chen,et al.  Semantic-Aware Generative Adversarial Nets for Unsupervised Domain Adaptation in Chest X-ray Segmentation , 2018, MLMI@MICCAI.

[2]  Keerthi Ram,et al.  Fully Convolutional Networks for Monocular Retinal Depth Estimation and Optic Disc-Cup Segmentation , 2019, IEEE Journal of Biomedical and Health Informatics.

[3]  Elijah Blessing Rajsingh,et al.  An empirical study on optic disc segmentation using an active contour model , 2015, Biomed. Signal Process. Control..

[4]  Jesús Alberto Meda-Campaña,et al.  On the Estimation and Control of Nonlinear Systems With Parametric Uncertainties and Noisy Outputs , 2018, IEEE Access.

[5]  Stephen Lin,et al.  Optic Cup Segmentation for Glaucoma Detection Using Low-Rank Superpixel Representation , 2014, MICCAI.

[6]  Majid A. Al-Taee,et al.  Dense Fully Convolutional Segmentation of the Optic Disc and Cup in Colour Fundus for Glaucoma Diagnosis , 2018, Symmetry.

[7]  Tien Yin Wong,et al.  Automatic detection of the optic cup using vessel kinking in digital retinal fundus images , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[8]  Yue Zhang,et al.  Task Driven Generative Modeling for Unsupervised Domain Adaptation: Application to X-ray Image Segmentation , 2018, MICCAI.

[9]  Tin Aung,et al.  The Prevalence and Types of Glaucoma in an Urban Chinese Population: The Singapore Chinese Eye Study. , 2015, JAMA ophthalmology.

[10]  Tien Yin Wong,et al.  ORIGA-light: An online retinal fundus image database for glaucoma analysis and research , 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

[11]  Jayanthi Sivaswamy,et al.  Drishti-GS: Retinal image dataset for optic nerve head(ONH) segmentation , 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

[12]  Changsheng Li,et al.  JointRCNN: A Region-Based Convolutional Neural Network for Optic Disc and Cup Segmentation , 2020, IEEE Transactions on Biomedical Engineering.

[13]  Mark Sandler,et al.  MobileNetV2: Inverted Residuals and Linear Bottlenecks , 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[14]  Xiaowei Xu,et al.  What Can Be Transferred: Unsupervised Domain Adaptation for Endoscopic Lesions Segmentation , 2020, 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[15]  Mamta Juneja,et al.  Survey on segmentation and classification approaches of optic cup and optic disc for diagnosis of glaucoma , 2018, Biomed. Signal Process. Control..

[16]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[17]  A. Sevastopolsky,et al.  Optic disc and cup segmentation methods for glaucoma detection with modification of U-Net convolutional neural network , 2017, Pattern Recognition and Image Analysis.

[18]  Umarani Balakrishnan NDC-IVM: An automatic segmentation of optic disc and cup region from medical images for glaucoma detection , 2017 .

[19]  Jiang Liu,et al.  Quadratic divergence regularized SVM for optic disc segmentation. , 2017, Biomedical optics express.

[20]  Chuan Chen,et al.  Learning Semantic Representations for Unsupervised Domain Adaptation , 2018, ICML.

[21]  Sang Jun Park,et al.  Towards Accurate Segmentation of Retinal Vessels and the Optic Disc in Fundoscopic Images with Generative Adversarial Networks , 2018, Journal of Digital Imaging.

[22]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[23]  R A Hitchings,et al.  Quantitative evaluation of the optic nerve head in early glaucoma , 1998, The British journal of ophthalmology.

[24]  Qing Liu,et al.  DDNet: Cartesian-polar Dual-domain Network for the Joint Optic Disc and Cup Segmentation , 2019, ArXiv.

[25]  Ganesh R. Naik,et al.  Retinal Fundus Image Analysis for Diagnosis of Glaucoma: A Comprehensive Survey , 2016, IEEE Access.

[26]  Lin Yang,et al.  Translating and Segmenting Multimodal Medical Volumes with Cycle- and Shape-Consistency Generative Adversarial Network , 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[27]  S. Drance,et al.  Risk factors for progression of visual field abnormalities in normal-tension glaucoma. , 2001, American journal of ophthalmology.

[28]  Dacheng Tao,et al.  Sparse Dissimilarity-Constrained Coding for Glaucoma Screening , 2015, IEEE Transactions on Biomedical Engineering.

[29]  Mu-Yen Chen,et al.  Wavelet-Based EEG Processing for Epilepsy Detection Using Fuzzy Entropy and Associative Petri Net , 2019, IEEE Access.

[30]  Ning Tan,et al.  Optic Disc and Cup Segmentation Based on Deep Convolutional Generative Adversarial Networks , 2019, IEEE Access.

[31]  Dante Mújica-Vargas,et al.  Genetic Algorithm with Radial Basis Mapping Network for the Electricity Consumption Modeling , 2020, Applied Sciences.

[32]  Xiaoxiao Li,et al.  REFUGE Challenge: A Unified Framework for Evaluating Automated Methods for Glaucoma Assessment from Fundus Photographs , 2019, Medical Image Anal..

[33]  Xiaogang Wang,et al.  Pyramid Scene Parsing Network , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[34]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[35]  Peng Liu,et al.  CFEA: Collaborative Feature Ensembling Adaptation for Domain Adaptation in Unsupervised Optic Disc and Cup Segmentation , 2019, MICCAI.

[36]  J. Jonas,et al.  Ranking of optic disc variables for detection of glaucomatous optic nerve damage. , 2000, Investigative ophthalmology & visual science.

[37]  Wei Liu,et al.  SSD: Single Shot MultiBox Detector , 2015, ECCV.

[38]  Kaiming He,et al.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[39]  Mariano Rincón,et al.  Identification of the optic nerve head with genetic algorithms , 2008, Artif. Intell. Medicine.

[40]  P. Netland,et al.  Assessment of intraocular pressure by palpation. , 1995, American journal of ophthalmology.

[41]  Ying Sun,et al.  Convex hull based neuro-retinal optic cup ellipse optimization in glaucoma diagnosis , 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[42]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[43]  Alexander Ilin,et al.  Semi-Supervised Few-Shot Learning with Prototypical Networks , 2017, ArXiv.

[44]  Ming Yang,et al.  PM-Net: Pyramid Multi-label Network for Joint Optic Disc and Cup Segmentation , 2019, MICCAI.

[45]  Ross B. Girshick,et al.  Fast R-CNN , 2015, 1504.08083.

[46]  Hao Chen,et al.  Synergistic Image and Feature Adaptation: Towards Cross-Modality Domain Adaptation for Medical Image Segmentation , 2019, AAAI.

[47]  Luc Van Gool,et al.  Deep Retinal Image Understanding , 2016, MICCAI.

[48]  Forrest N. Iandola,et al.  DenseNet: Implementing Efficient ConvNet Descriptor Pyramids , 2014, ArXiv.

[49]  Francisco Fumero,et al.  RIM-ONE: An open retinal image database for optic nerve evaluation , 2011, 2011 24th International Symposium on Computer-Based Medical Systems (CBMS).

[50]  Li Fei-Fei,et al.  ImageNet: A large-scale hierarchical image database , 2009, CVPR.

[51]  M. Usman Akram,et al.  Improved automated detection of glaucoma from fundus image using hybrid structural and textural features , 2017, IET Image Process..

[52]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[53]  Ali Farhadi,et al.  YOLOv3: An Incremental Improvement , 2018, ArXiv.

[54]  Xiaochun Cao,et al.  Joint Optic Disc and Cup Segmentation Based on Multi-Label Deep Network and Polar Transformation , 2018, IEEE Transactions on Medical Imaging.

[55]  Junzhou Huang,et al.  Progressive Feature Alignment for Unsupervised Domain Adaptation , 2018, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[56]  Guoying Zhao,et al.  A spatial-aware joint optic disc and cup segmentation method , 2019, Neurocomputing.

[57]  François Chollet,et al.  Xception: Deep Learning with Depthwise Separable Convolutions , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[58]  Fan Zhang,et al.  Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-Weighting , 2020, 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[59]  Juan Humberto Sossa Azuela,et al.  Hybrid neural networks for big data classification , 2020, Neurocomputing.

[60]  Trevor Darrell,et al.  Rich Feature Hierarchies for Accurate Object Detection and Semantic Segmentation , 2013, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[61]  T. Wong,et al.  Global prevalence of glaucoma and projections of glaucoma burden through 2040: a systematic review and meta-analysis. , 2014, Ophthalmology.

[62]  José de Jesús Rubio,et al.  SOFMLS: Online Self-Organizing Fuzzy Modified Least-Squares Network , 2009, IEEE Transactions on Fuzzy Systems.

[63]  David Ricardo Cruz,et al.  Novel Nonlinear Hypothesis for the Delta Parallel Robot Modeling , 2020, IEEE Access.

[64]  Chi-Wing Fu,et al.  Patch-Based Output Space Adversarial Learning for Joint Optic Disc and Cup Segmentation , 2019, IEEE Transactions on Medical Imaging.

[65]  Chi-Wing Fu,et al.  Boundary and Entropy-driven Adversarial Learning for Fundus Image Segmentation , 2019, MICCAI.