A new method to cluster DNA sequences using Fourier power spectrum
暂无分享,去创建一个
Changchuan Yin | Rong Lucy He | Chenglong Yu | Stephen S-T Yau | Changchuan Yin | S. Yau | Chenglong Yu | Tung Hoang | Hui Zheng | Tung Hoang | Hui Zheng | Rong Lucy He
[1] Changchuan Yin,et al. A Novel Construction of Genome Space with Biological Geometry , 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.
[2] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[3] Alan V. Oppenheim,et al. Discrete-Time Signal Pro-cessing , 1989 .
[4] B. Berkhout,et al. Identification of a new human coronavirus , 2004, Nature Medicine.
[5] Stephen S.-T. Yau,et al. DNA sequence comparison by a novel probabilistic method , 2011, Inf. Sci..
[6] Changchuan Yin,et al. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence. , 2007, Journal of theoretical biology.
[7] Ron A M Fouchier,et al. Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans , 2009, Science.
[8] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[9] D J Alexander,et al. A review of avian influenza in different bird species. , 2000, Veterinary microbiology.
[10] B. Blaisdell,et al. Average values of a dissimilarity measure not requiring sequence alignment are twice the averages of conventional mismatch counts requiring sequence alignment for a computer-generated model system , 2007, Journal of Molecular Evolution.
[11] Somdatta Sinha,et al. Using genomic signatures for HIV-1 sub-typing , 2010, BMC Bioinformatics.
[12] J. A. Tenreiro Machado,et al. Fractional dynamics in DNA , 2011 .
[13] Jonas S. Almeida,et al. Alignment-free sequence comparison-a review , 2003, Bioinform..
[14] J. F. Young,et al. Variation of influenza A, B, and C viruses. , 1982, Science.
[15] Shigehiko Kanaya,et al. Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis. , 2002, Gene.
[16] Vera Afreixo,et al. Spectrum and symbol distribution of nucleotide sequences. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[17] David Spiro,et al. Sequencing and Analyses of All Known Human Rhinovirus Genomes Reveal Structure and Evolution , 2009, Science.
[18] Yizhar Lavner,et al. Gene prediction by spectral rotation measure: a new method for identifying protein-coding regions. , 2003, Genome research.
[19] Troy Hernandez,et al. Real Time Classification of Viruses in 12 Dimensions , 2013, PloS one.
[20] Allan C. Wilson,et al. Mitochondrial DNA sequences of primates: Tempo and mode of evolution , 2005, Journal of Molecular Evolution.
[21] Bo Zhao,et al. A novel clustering method via nucleotide-based Fourier power spectrum analysis , 2011, Journal of Theoretical Biology.
[22] Changchuan Yin,et al. A Fourier Characteristic of Coding Sequences: Origins and a Non-Fourier Approximation , 2005, J. Comput. Biol..
[23] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[24] S. Tiwari,et al. Prediction of probable genes by Fourier analysis of genomic sequences , 1997, Comput. Appl. Biosci..
[25] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[26] Obi L. Griffith,et al. The Genome Sequence of the SARS-Associated Coronavirus , 2003, Science.
[27] Dimitris Anastassiou,et al. Frequency-domain analysis of biomolecular sequences , 2000, Bioinform..
[28] Armando J. Pinho,et al. Genome analysis with inter-nucleotide distances , 2009, Bioinform..
[29] Chenglong Yu,et al. A Novel Method of Characterizing Genetic Sequences: Genome Space with Biological Distance and Applications , 2011, PloS one.
[30] R. Webster,et al. Evolution and ecology of influenza A viruses. , 1992, Current topics in microbiology and immunology.
[31] Robert R. Sokal,et al. A statistical method for evaluating systematic relationships , 1958 .
[32] P. P. Vaidyanathan,et al. The role of signal-processing concepts in genomics and proteomics , 2004, J. Frankl. Inst..
[33] Chenglong Yu,et al. A protein map and its application. , 2008, DNA and cell biology.
[34] Samson S. Y. Wong,et al. Characterization and Complete Genome Sequence of a Novel Coronavirus, Coronavirus HKU1, from Patients with Pneumonia , 2005, Journal of Virology.