Medaka Genomics and the Methods and Resources for Decoding Genomic Functions

[1]  Z. Gong,et al.  Maize Ac/Ds transposon system leads to highly efficient germline transmission of transgenes in medaka (Oryzias latipes). , 2011, Biochimie.

[2]  Y. Takei,et al.  Evolutionary implication of the absence of atrial natriuretic peptide (ANP) in euryhaline Oryzias fishes , 2011, Environmental Biology of Fishes.

[3]  H. Gutzeit,et al.  Effective generation of transgenic reporter and gene trap lines of the medaka (Oryzias latipes) using the Ac/Ds transposon system , 2011, Transgenic Research.

[4]  K. Naruse Genetics, Genomics, and Biological Resources in the Medaka, Oryzias latipes , 2011 .

[5]  C. Peichel,et al.  Adaptive Divergence in the Thyroid Hormone Signaling Pathway in the Stickleback Radiation , 2010, Current Biology.

[6]  T. Todo,et al.  High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library , 2010, BMC Molecular Biology.

[7]  Dirk Becker,et al.  FLP/FRT Recombination from Yeast: Application of a Two Gene Cassette Scheme as an Inducible System in Plants , 2010, Sensors.

[8]  K. Naruse,et al.  M-marker 2009, a marker set for mapping medaka mutants using PCR length polymorphisms with an automated microchip gel electrophoresis system. , 2010, BioTechniques.

[9]  S. Higashijima,et al.  Identification of Germline Stem Cells in the Ovary of the Teleost Medaka , 2010, Science.

[10]  L. Parenti,et al.  A New, Remarkably Colorful, Small Ricefish of the Genus Oryzias (Beloniformes, Adrianichthyidae) from Sulawesi, Indonesia , 2010, Copeia.

[11]  Jeremy Schmutz,et al.  Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer , 2010, Science.

[12]  Minoru Tanaka,et al.  The National BioResource Project Medaka (NBRP Medaka): an integrated bioresource for biological and biomedical sciences. , 2010, Experimental animals.

[13]  T. Todo,et al.  Infrared laser‐mediated local gene induction in medaka, zebrafish and Arabidopsis thaliana , 2009, Development, growth & differentiation.

[14]  Kenjiro Watanabe,et al.  Infrared laser–mediated gene induction in targeted single cells in vivo , 2009, Nature Methods.

[15]  Yunhan Hong,et al.  3640 Unique EST Clusters from the Medaka Testis and Their Potential Use for Identifying Conserved Testicular Gene Expression in Fish and Mammals , 2008, PloS one.

[16]  L. Parenti A Phylogenetic Analysis and Taxonomic Revision of Ricefishes, Oryzias and Relatives (Beloniformes, Adrianichthyidae) , 2008 .

[17]  Lynne R. Parenti fls A phylogenetic analysis and taxonomic revision of ricefishes, Oryzias and relatives (Beloniformes, Adrianichthyidae) , 2008 .

[18]  D. Saito,et al.  Generation of transgenic medaka using modified bacterial artificial chromosome , 2008, Development, growth & differentiation.

[19]  Fumiko Ohta,et al.  The medaka draft genome and insights into vertebrate genome evolution , 2007, Nature.

[20]  M. Carl,et al.  Mutant analyses reveal different functions of fgfr1 in medaka and zebrafish despite conserved ligand-receptor relationships. , 2007, Developmental biology.

[21]  T. R. Roberts Systematic observations on tropical Asian medakas or ricefishes of the genusOryzias, with descriptions of four new species , 1998, Ichthyological Research.

[22]  Ian Mayer,et al.  The Molecular Genetics of Evolutionary Change in Sticklebacks , 2006 .

[23]  F. Huntingford,et al.  Biology of the Three-Spined Stickleback , 2006 .

[24]  Y. Sakaki,et al.  Generation of medaka gene knockout models by target-selected mutagenesis , 2006, Genome Biology.

[25]  Eric S. Lander,et al.  Genetic evidence for complex speciation of humans and chimpanzees , 2006, Nature.

[26]  K. Naruse,et al.  Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences. , 2005, Molecular phylogenetics and evolution.

[27]  S. Fuerstenberg,et al.  A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING , 2005, Nature Biotechnology.

[28]  Y. Kohara,et al.  Large-scale analysis of the genes involved in fin regeneration and blastema formation in the medaka, Oryzias latipes , 2004, Mechanisms of Development.

[29]  Y. Kohara,et al.  Medaka genomics: a bridge between mutant phenotype and gene function , 2004, Mechanisms of Development.

[30]  Y. Kohara,et al.  Large-scale isolation of ESTs from medaka embryos and its application to medaka developmental genetics , 2004, Mechanisms of Development.

[31]  Y. Takehana,et al.  Geographic Variation and Diversity of the Cytochrome b Gene in Wild Populations of Medaka (Oryzias latipes) from Korea and China , 2004, Zoological science.

[32]  M. Sakaizuml Genetic divergence in wild populations of Medaka, Oryzias latipes (Pisces: Oryziatidae) from Japan and China , 1986, Genetica.

[33]  L. Parenti,et al.  Adrianichthys roseni and Oryzias nebulosus, two new ricefishes (Atherinomorpha: Beloniformes: Adrianichthyidae) from Lake Poso, Sulawesi, Indonesia , 2004, Ichthyological Research.

[34]  Y. Takei,et al.  Asian medaka fishes offer new models for studying mechanisms of seawater adaptation. , 2003, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

[35]  Edwin Cuppen,et al.  Efficient target-selected mutagenesis in zebrafish. , 2003, Genome research.

[36]  N. Nagai,et al.  Geographic Variation and Diversity of the Cytochrome b Gene in Japanese Wild Populations of Medaka, Oryzias latipes , 2003, Zoological science.

[37]  Carl T Wittwer,et al.  High-resolution genotyping by amplicon melting analysis using LCGreen. , 2003, Clinical chemistry.

[38]  Martin Parniske,et al.  A TILLING Reverse Genetics Tool and a Web-Accessible Collection of Mutants of the Legume Lotus japonicus 1 , 2003, Plant Physiology.

[39]  Steven Henikoff,et al.  Large-scale discovery of induced point mutations with high-throughput TILLING. , 2003, Genome research.

[40]  C. Kimmel,et al.  Inhibition of zebrafish fgf8 pre‐mRNA splicing with morpholino oligos: A quantifiable method for gene knockdown , 2001, Genesis.

[41]  S. Henikoff,et al.  High-throughput screening for induced point mutations. , 2001, Plant physiology.

[42]  Daniel Lee,et al.  The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species , 2001, Nucleic Acids Res..

[43]  S. Henikoff,et al.  Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. , 2000, Plant physiology.

[44]  L. Zane,et al.  Mitochondrial phylogeny of notothenioids: a molecular approach to Antarctic fish evolution and biogeography. , 2000, Systematic biology.

[45]  A. Godwin,et al.  Mutation detection using a novel plant endonuclease. , 1998, Nucleic acids research.

[46]  K. Naruse Classification and phylogeny of fishes of the genus Oryzias and its relatives( Development of Medaka Biology in Japan-Part I) , 1996 .

[47]  Susan A. Foster,et al.  The Evolutionary biology of the threespine stickleback , 1995 .

[48]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[49]  M. Sakaizumi Rigid Isolation between the Northern Population and the Southern Population of the Medaka, Oryzias latipes(Genetics) , 1984 .

[50]  H. Uwa,et al.  Detailed and Banding Karyotype Analyses of the Medaka, Oryzias latipes in Cultured Cells , 1981 .

[51]  N. Egami Effect of Artificial Photoperiodicity on Time of Oviposition in the Fish,Oryzias latipes , 1954 .