A segment alignment approach to protein comparison
暂无分享,去创建一个
Adam Godzik | Yuzhen Ye | Lukasz Jaroszewski | Weizhong Li | A. Godzik | Weizhong Li | L. Jaroszewski | Yuzhen Ye
[1] Dan Gusfield,et al. Algorithms on Strings, Trees, and Sequences - Computer Science and Computational Biology , 1997 .
[2] Richard Bonneau,et al. Ab initio protein structure prediction of CASP III targets using ROSETTA , 1999, Proteins.
[3] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[4] T L Blundell,et al. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. , 2001, Journal of molecular biology.
[5] D. Baker,et al. Prediction of local structure in proteins using a library of sequence-structure motifs. , 1998, Journal of molecular biology.
[6] E. Lander,et al. Protein secondary structure prediction using nearest-neighbor methods. , 1993, Journal of molecular biology.
[7] M Mezei,et al. Chameleon sequences in the PDB. , 1998, Protein engineering.
[8] Haruki Nakamura,et al. Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices , 1994, Cell.
[9] A. Godzik,et al. Comparison of sequence profiles. Strategies for structural predictions using sequence information , 2008, Protein science : a publication of the Protein Society.
[10] Eugene W. Myers,et al. Optimal alignments in linear space , 1988, Comput. Appl. Biosci..
[11] S. Henikoff,et al. Amino acid substitution matrices. , 2000, Advances in protein chemistry.
[12] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[13] L Rychlewski,et al. Secondary structure prediction using segment similarity. , 1997, Protein engineering.
[14] P E Bourne,et al. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. , 1998, Protein engineering.
[15] Michael S. Waterman,et al. Introduction to computational biology , 1995 .
[16] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[17] Melissa S. Cline,et al. Predicting reliable regions in protein sequence alignments , 2002, Bioinform..
[18] Leszek Rychlewski,et al. Improving the quality of twilight‐zone alignments , 2000, Protein science : a publication of the Protein Society.
[19] M J Sternberg,et al. Progress in protein structure prediction: assessment of CASP3. , 1999, Current opinion in structural biology.
[20] B. Rost,et al. Protein structures sustain evolutionary drift. , 1997, Folding & design.
[21] Mikhail S. Gelfand,et al. Gene recognition in eukaryotic DNA by comparison of genomic sequences , 2001, Bioinform..
[22] P. Pevzner,et al. Gene recognition via spliced sequence alignment. , 1996, Proceedings of the National Academy of Sciences of the United States of America.