Ancestry estimation and control of population stratification for sequence-based association studies
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Chaolong Wang | Hyun Min Kang | Sebastian Zöllner | Elaine R Mardis | Xiaowei Zhan | Xihong Lin | Anand Swaroop | Gonçalo R Abecasis | Jennifer Bragg-Gresham | Emily Y Chew | G. Abecasis | H. Kang | R. Wilson | R. Fulton | E. Mardis | Xihong Lin | E. Chew | Chaolong Wang | Xiaowei Zhan | A. Swaroop | S. Zöllner | J. Bragg-Gresham | J. Heckenlively | D. Stambolian | K. Branham | Richard K Wilson | Dwight Stambolian | Kari E Branham | John Heckenlively | Robert Fulton | R. Wilson
[1] Weihua Guan,et al. Genotype‐based matching to correct for population stratification in large‐scale case‐control genetic association studies , 2009, Genetic epidemiology.
[2] P. Donnelly,et al. The effects of human population structure on large genetic association studies , 2004, Nature Genetics.
[3] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[4] Ying Liu,et al. FaST linear mixed models for genome-wide association studies , 2011, Nature Methods.
[5] John Novembre,et al. The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research. , 2008, American journal of human genetics.
[6] R N Bergman,et al. Mapping Genes for NIDDM: Design of the Finland—United States Investigation of NIDDM Genetics (FUSION) Study , 1998, Diabetes Care.
[7] Sivakumar Gowrisankar,et al. A rare penetrant mutation in CFH confers high risk of age-related macular degeneration , 2011, Nature Genetics.
[8] P. Schönemann,et al. Fitting one matrix to another under choice of a central dilation and a rigid motion , 1970 .
[9] Richard R. Hudson,et al. Generating samples under a Wright-Fisher neutral model of genetic variation , 2002, Bioinform..
[10] Terence P. Speed,et al. High-quality DNA sequence capture of 524 disease candidate genes , 2011, Proceedings of the National Academy of Sciences.
[11] H. Kang,et al. Variance component model to account for sample structure in genome-wide association studies , 2010, Nature Genetics.
[12] S. Gabriel,et al. Analysis of 6,515 exomes reveals a recent origin of most human protein-coding variants , 2012, Nature.
[13] Bradley P. Coe,et al. Copy number variation detection and genotyping from exome sequence data , 2012, Genome research.
[14] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[15] M. Jakobsson,et al. Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe , 2012, Science.
[16] D. Reich,et al. Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.
[17] Russ Wolfinger,et al. SNP selection and multidimensional scaling to quantify population structure , 2009, Genetic epidemiology.
[18] D. Clayton,et al. Population structure, differential bias and genomic control in a large-scale, case-control association study , 2005, Nature Genetics.
[19] Hugo Y. K. Lam,et al. Performance comparison of exome DNA sequencing technologies , 2011, Nature Biotechnology.
[20] Noah A. Rosenberg,et al. A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations , 2012, PLoS genetics.
[21] Taylor J. Maxwell,et al. Deep resequencing reveals excess rare recent variants consistent with explosive population growth , 2010, Nature communications.
[22] K. Frazer,et al. Human genetic variation and its contribution to complex traits , 2009, Nature Reviews Genetics.
[23] G. Abecasis,et al. Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data. , 2012, American journal of human genetics.
[24] L. Cardon,et al. Population stratification and spurious allelic association , 2003, The Lancet.
[25] M. Feldman,et al. Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .
[26] M. Stephens,et al. Genome-wide Efficient Mixed Model Analysis for Association Studies , 2012, Nature Genetics.
[27] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[28] Gonçalo R. Abecasis,et al. The variant call format and VCFtools , 2011, Bioinform..
[29] Chengsong Zhu,et al. Nonmetric Multidimensional Scaling Corrects for Population Structure in Association Mapping With Different Sample Types , 2009, Genetics.
[30] D. Reich,et al. Population Structure and Eigenanalysis , 2006, PLoS genetics.
[31] Claudio J. Verzilli,et al. An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People , 2012, Science.
[32] J. Shendure,et al. Exome sequencing as a tool for Mendelian disease gene discovery , 2011, Nature Reviews Genetics.
[33] Xiaofeng Zhu,et al. On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals , 2003, Genetic epidemiology.
[34] Alkes L. Price,et al. New approaches to population stratification in genome-wide association studies , 2010, Nature Reviews Genetics.
[35] Margaret A. Pericak-Vance,et al. Genetic variants near TIMP3 and high-density lipoprotein–associated loci influence susceptibility to age-related macular degeneration , 2010, Proceedings of the National Academy of Sciences.
[36] Margaret A. Pericak-Vance,et al. Identification of a Rare Coding Variant in Complement 3 Associated with Age-related Macular Degeneration , 2013, Nature Genetics.
[37] Sharon R Grossman,et al. Integrating common and rare genetic variation in diverse human populations , 2010, Nature.
[38] M. Daly,et al. Genetic Mapping in Human Disease , 2008, Science.
[39] Emily H Turner,et al. Target-enrichment strategies for next-generation sequencing , 2010, Nature Methods.
[40] Eran Halperin,et al. A model based approach for analysis of spatial structure in genetic data , 2013 .
[41] E. Banks,et al. Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth. , 2012, American journal of human genetics.
[42] Si Quang Le,et al. SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples. , 2011, Genome research.
[43] Joshua M. Korn,et al. Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease , 2011, Nature Genetics.
[44] Amit R. Indap,et al. Genes mirror geography within Europe , 2008, Nature.
[45] F. Collins,et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits , 2009, Proceedings of the National Academy of Sciences.
[46] Zachary A. Szpiech,et al. Statistical Applications in Genetics and Molecular Biology Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis , 2011 .
[47] M. McCarthy,et al. Genome-wide association studies for complex traits: consensus, uncertainty and challenges , 2008, Nature Reviews Genetics.
[48] J. Todd,et al. Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes , 2009, Science.
[49] K. Holsinger,et al. Genetics in geographically structured populations: defining, estimating and interpreting FST , 2009, Nature Reviews Genetics.
[50] L. Liang,et al. Extremely low-coverage sequencing and imputation increases power for genome-wide association studies , 2012, Nature Genetics.
[51] G. Abecasis,et al. Low-coverage sequencing: implications for design of complex trait association studies. , 2011, Genome research.
[52] G. McVean,et al. Differential confounding of rare and common variants in spatially structured populations , 2011, Nature Genetics.