A Machine Learning Method for the Prediction of Receptor Activation in the Simulation of Synapses
暂无分享,去创建一个
Javier DeFelipe | Angel Merchán-Pérez | J. DeFelipe | J. Peña | Á. Merchán-Pérez | Jesus Montes | Elena Gomez | Jose-Maria Peña | Jesús Montes | Elena Gomez
[1] Peter Somogyi,et al. Cell Type and Pathway Dependence of Synaptic AMPA Receptor Number and Variability in the Hippocampus , 1998, Neuron.
[2] Theodore W. Berger,et al. Integrated Multiscale Modeling of the Nervous System: Predicting Changes in Hippocampal Network Activity by a Positive AMPA Receptor Modulator , 2011, IEEE Transactions on Biomedical Engineering.
[3] Christopher J. Lee. Open Peer Review by a Selected-Papers Network , 2011, Front. Comput. Neurosci..
[4] C. Nicholson,et al. Diffusion in brain extracellular space. , 2008, Physiological reviews.
[5] Petter Laake,et al. Different modes of expression of AMPA and NMDA receptors in hippocampal synapses , 1999, Nature Neuroscience.
[6] J. Friedman,et al. Projection Pursuit Regression , 1981 .
[7] P. Maini,et al. Multiscale modeling in biology , 2007 .
[8] Terrence J Sejnowski,et al. A Monte Carlo model reveals independent signaling at central glutamatergic synapses. , 2002, Biophysical journal.
[9] Scott B. Baden,et al. Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces , 2008, SIAM J. Sci. Comput..
[10] K. P. Lehre,et al. The Number of Glutamate Transporter Subtype Molecules at Glutamatergic Synapses: Chemical and Stereological Quantification in Young Adult Rat Brain , 1998, The Journal of Neuroscience.
[11] Mark A. J. Chaplain,et al. Multiscale mathematical modelling in biology and medicine , 2011 .
[12] D. Kullmann,et al. Extrasynaptic Glutamate Diffusion in the Hippocampus: Ultrastructural Constraints, Uptake, and Receptor Activation , 1998, The Journal of Neuroscience.
[13] Charles Nicholson,et al. In vivo diffusion analysis with quantum dots and dextrans predicts the width of brain extracellular space. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[14] San Cristóbal Mateo,et al. The Lack of A Priori Distinctions Between Learning Algorithms , 1996 .
[15] J. Henley,et al. Shaping the synaptic signal: molecular mobility inside and outside the cleft , 2011, Trends in Neurosciences.
[16] R. Silver,et al. The density of AMPA receptors activated by a transmitter quantum at the climbing fibre‐Purkinje cell synapse in immature rats , 2003, The Journal of physiology.
[17] Masahiko Watanabe,et al. Input-Specific Intrasynaptic Arrangements of Ionotropic Glutamate Receptors and Their Impact on Postsynaptic Responses , 2009, The Journal of Neuroscience.
[18] D. Rusakov,et al. Receptor actions of synaptically released glutamate: the role of transporters on the scale from nanometers to microns. , 2008, Biophysical journal.
[19] T. Schikorski,et al. Inactivity Produces Increases in Neurotransmitter Release and Synapse Size , 2001, Neuron.
[20] E Weinan,et al. Multi-scale Modeling and Computation , 2003 .
[21] J. R. Quinlan. Learning With Continuous Classes , 1992 .
[22] C. Nicholson,et al. Extracellular space structure revealed by diffusion analysis , 1998, Trends in Neurosciences.
[23] อนิรุธ สืบสิงห์,et al. Data Mining Practical Machine Learning Tools and Techniques , 2014 .
[24] Helmut Kröger,et al. Realistic modelling of receptor activation in hippocampal excitatory synapses: analysis of multivesicular release, release location, temperature and synaptic cross-talk , 2010, Brain Structure and Function.
[25] Roger Brent,et al. Detailed Simulations of Cell Biology with Smoldyn 2.1 , 2010, PLoS Comput. Biol..
[26] Thomas A. Nielsen,et al. Modulation of Glutamate Mobility Reveals the Mechanism Underlying Slow-Rising AMPAR EPSCs and the Diffusion Coefficient in the Synaptic Cleft , 2004, Neuron.
[27] P. Bassereau,et al. Lateral Diffusion on Tubular Membranes: Quantification of Measurements Bias , 2011, PloS one.
[28] Ian H. Witten,et al. Induction of model trees for predicting continuous classes , 1996 .
[29] J. DeFelipe,et al. Gender differences in human cortical synaptic density , 2008, Proceedings of the National Academy of Sciences.
[30] I. Shrivastava,et al. Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer. , 2000, Biophysical journal.
[31] S. Plimpton,et al. Microbial cell modeling via reacting diffusive particles , 2005 .
[32] T. Secomb,et al. Effect of cell arrangement and interstitial volume fraction on the diffusivity of monoclonal antibodies in tissue. , 1993, Biophysical journal.
[33] Nicholas T. Carnevale,et al. Simulation of networks of spiking neurons: A review of tools and strategies , 2006, Journal of Computational Neuroscience.
[34] D. Bray,et al. Stochastic simulation of chemical reactions with spatial resolution and single molecule detail , 2004, Physical biology.
[35] L. Savtchenko,et al. The optimal height of the synaptic cleft , 2007, Proceedings of the National Academy of Sciences.
[36] R. Weinberg,et al. Immunogold localization of AMPA and NMDA receptors in somatic sensory cortex of albino rat , 1999, The Journal of comparative neurology.
[37] T. Schikorski,et al. Quantitative Ultrastructural Analysis of Hippocampal Excitatory Synapses Materials and Methods Terminology Fixation and Embedding , 2022 .
[38] D. Bruns,et al. Real-time measurement of transmitter release from single synaptic vesicles , 1995, Nature.
[39] Erik De Schutter,et al. Monte Carlo Methods for Simulating Realistic Synaptic Microphysiology Using MCell , 2000 .
[40] Michael L. Hines,et al. The NEURON Book , 2006 .
[41] L. Savtchenko,et al. Central Synapses Release a Resource-Efficient Amount of Glutamate , 2012, Nature Neuroscience.
[42] Theodore W. Berger,et al. A Computational Model to Investigate Astrocytic Glutamate Uptake Influence on Synaptic Transmission and Neuronal Spiking , 2012, Front. Comput. Neurosci..
[43] E. Gray,et al. The Fine Structure of the Nervous System , 1971 .
[44] J. Freidman,et al. Multivariate adaptive regression splines , 1991 .
[45] David Gavaghan,et al. Multi-scale computational modelling in biology and physiology , 2007, Progress in Biophysics and Molecular Biology.
[46] G. Colombo,et al. Molecular dynamics simulations of proteins and peptides: from folding to drug design. , 2008, Current protein & peptide science.
[47] Erik De Schutter,et al. Computational neuroscience : realistic modeling for experimentalists , 2000 .
[48] S. Hyakin,et al. Neural Networks: A Comprehensive Foundation , 1994 .
[49] E. Teller,et al. Regression and Correlation Analysis , 1990 .
[50] Efthimios Kaxiras,et al. An Overview of Multiscale Simulations of Materials , 2004 .
[51] James M. Bower,et al. The book of GENESIS - exploring realistic neural models with the GEneral NEural SImulation System (2. ed.) , 1994 .
[52] V. Tennyson. The Fine Structure of the Nervous System. , 1970 .
[53] M L Hines,et al. Neuron: A Tool for Neuroscientists , 2001, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.
[54] S. Palay,et al. The Fine Structure of the Nervous System: Neurons and Their Supporting Cells , 1991 .
[55] Belur V. Dasarathy,et al. Nearest neighbor (NN) norms: NN pattern classification techniques , 1991 .
[56] M. Praprotnik,et al. Multiscale molecular modeling. , 2013, Methods in molecular biology.
[57] Adel K. Afifi,et al. The Fine Structure of the Nervous System , 1991, Neurology.
[58] B. Sakmann,et al. Quantal components of unitary EPSCs at the mossy fibre synapse on CA3 pyramidal cells of rat hippocampus. , 1993, The Journal of physiology.
[59] K. Moulder,et al. Spontaneous and Evoked Glutamate Release Activates Two Populations of NMDA Receptors with Limited Overlap , 2008, The Journal of Neuroscience.
[60] Kristen M Harris,et al. Ultrastructure of synapses in the mammalian brain. , 2012, Cold Spring Harbor perspectives in biology.
[61] K. Fuxe,et al. From the Golgi–Cajal mapping to the transmitter-based characterization of the neuronal networks leading to two modes of brain communication: Wiring and volume transmission , 2007, Brain Research Reviews.