A multistep mechanism for the activation of rearrangement in the immune system

Rearrangement of immune receptor loci is a developmentally controlled process that takes place exclusively in lymphoid cells. We have used a stable transfection system in pre-B cells to show that DNA methylation brings about histone underacetylation, histone H3(K9) methylation, DNaseI resistance, and strong inhibition of both transcription and recombination. Strikingly, this repression is maintained in dividing cells even after removal of the original methyl groups responsible for its establishment, but in this state, rearrangement can now be induced by reacetylation of local histones using the drug Trichostatin A. This same combination of demethylation and histone acetylation is also required to activate germline transcription and recombination from the endogenous κ locus in vivo. These results indicate that the regulation of rearrangement is carried out by a multilayered synergistic process.

[1]  Tony Kouzarides,et al.  The Methyl-CpG-binding Protein MeCP2 Links DNA Methylation to Histone Methylation* , 2003, The Journal of Biological Chemistry.

[2]  M. Szyf,et al.  Demethylase Activity Is Directed by Histone Acetylation* , 2001, The Journal of Biological Chemistry.

[3]  C. Allis,et al.  Correlation Between Histone Lysine Methylation and Developmental Changes at the Chicken β-Globin Locus , 2001, Science.

[4]  B. Turner,et al.  Chromatin Remodeling at the Ig Loci Prior to V(D)J Recombination1 , 2001, The Journal of Immunology.

[5]  M. Krangel V(D)j Recombination Becomes Accessible , 2001, The Journal of experimental medicine.

[6]  T. Honjo,et al.  Histone Acetylation Determines the Developmentally Regulated Accessibility for T Cell Receptor γ Gene Recombination , 2001, The Journal of experimental medicine.

[7]  F. Ding,et al.  Genomic Imprinting Disrupted by a Maternal Effect Mutation in the Dnmt1 Gene , 2001, Cell.

[8]  R. Grosschedl,et al.  Matrix Attachment Region-Dependent Function of the Immunoglobulin μ Enhancer Involves Histone Acetylation at a Distance without Changes in Enhancer Occupancy , 2001, Molecular and Cellular Biology.

[9]  R. Kingston,et al.  Histone acetylation and hSWI/SNF remodeling act in concert to stimulate V(D)J cleavage of nucleosomal DNA. , 2000, Molecular cell.

[10]  Jianzhu Chen,et al.  Deletion of Germline Promoter PDβ1 from the TCRβ Locus Causes Hypermethylation that Impairs Dβ1 Recombination by Multiple Mechanisms , 2000 .

[11]  R. Jaenisch,et al.  Retroviral Expression in Embryonic Stem Cells and Hematopoietic Stem Cells , 2000, Molecular and Cellular Biology.

[12]  S. Spicuglia,et al.  Chromatin Remodeling by the T Cell Receptor (Tcr)-β Gene Enhancer during Early T Cell Development , 2000, The Journal of Experimental Medicine.

[13]  U. Storb,et al.  A linkage map of distal mouse Chromosome 4 in the vicinity of Ssm1, a strain-specific modifier of methylation , 2000, Mammalian Genome.

[14]  S. Grewal,et al.  A Chromodomain Protein, Swi6, Performs Imprinting Functions in Fission Yeast during Mitosis and Meiosis , 2000, Cell.

[15]  J. Boyes,et al.  Stimulation of V(D)J recombination by histone acetylation , 2000, Current Biology.

[16]  R. Paro,et al.  Epigenetic inheritance of active chromatin after removal of the main transactivator. , 1999, Science.

[17]  Y. Bergman,et al.  Allelic exclusion in B and T lymphopoiesis. , 1999, Seminars in immunology.

[18]  D. Baltimore,et al.  Chromatin remodeling directly activates V(D)J recombination. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[19]  H. Cedar,et al.  Developmental regulation of immune system gene rearrangement. , 1999, Current opinion in immunology.

[20]  T. Hashimshony,et al.  DNA methylation models histone acetylation , 1998, Nature.

[21]  A. Chess,et al.  Kappa chain monoallelic demethylation and the establishment of allelic exclusion. , 1998, Genes & development.

[22]  J. Strouboulis,et al.  Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription , 1998, Nature Genetics.

[23]  Colin A. Johnson,et al.  Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex , 1998, Nature.

[24]  Y. Bergman,et al.  DNA demethylation: turning genes on. , 1998, Biological chemistry.

[25]  P. Jones,et al.  Altered DNA methylation and genome instability: a new pathway to cancer? , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Stefan U Kass,et al.  DNA methylation directs a time-dependent repression of transcription initiation , 1997, Current Biology.

[27]  Howard Cedar,et al.  A role for nuclear NF–κB in B–cell–specific demethylation of the Igκ locus , 1996, Nature Genetics.

[28]  M. Gellert A new view of V(D)J recombination , 1996, Genes to cells : devoted to molecular & cellular mechanisms.

[29]  G. Nolan,et al.  Applications of retrovirus-mediated expression cloning. , 1996, Experimental hematology.

[30]  S. Horinouchi,et al.  Trichostatin A and trapoxin: Novel chemical probes for the role of histone acetylation in chromatin structure and function , 1995, BioEssays : news and reviews in molecular, cellular and developmental biology.

[31]  T. R. Hebbes,et al.  Core histone hyperacetylation co‐maps with generalized DNase I sensitivity in the chicken beta‐globin chromosomal domain. , 1994, The EMBO journal.

[32]  H. Cedar,et al.  B cell-specific demethylation: A novel role for the intronic κ chain enhancer sequence , 1994, Cell.

[33]  M. Schlissel,et al.  Double-strand signal sequence breaks in V(D)J recombination are blunt, 5'-phosphorylated, RAG-dependent, and cell cycle regulated. , 1993, Genes & development.

[34]  T. Bestor,et al.  Properties and localization of DNA methyltransferase in preimplantation mouse embryos: implications for genomic imprinting. , 1992, Genes & development.

[35]  M. Lieber,et al.  CpG methylated minichromosomes become inaccessible for V(D)J recombination after undergoing replication. , 1992, The EMBO journal.

[36]  J. Gibbs Ras C-terminal processing enzymes—New drug targets? , 1991, Cell.

[37]  W. Ostertag,et al.  Embryonic stem cell virus, a recombinant murine retrovirus with expression in embryonic stem cells. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[38]  D. Schatz,et al.  RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination. , 1990, Science.

[39]  B. V. Van Ness,et al.  Initiation and processing of two kappa immunoglobulin germ line transcripts in mouse B cells , 1990, Molecular and cellular biology.

[40]  David Baltimore,et al.  The V(D)J recombination activating gene, RAG-1 , 1989, Cell.

[41]  Y. Bergman,et al.  The mouse albumin promoter and a distal upstream site are simultaneously DNase I hypersensitive in liver chromatin and bind similar liver-abundant factors in vitro. , 1988, Genes & development.

[42]  H. Cedar,et al.  Effect of CpG methylation on Msp I. , 1983, Nucleic acids research.

[43]  David Baltimore,et al.  Organization and reorganization of immunoglobulin genes in A-MuLV-transformed cells: Rearrangement of heavy but not light chain genes , 1981, Cell.

[44]  J. Herman,et al.  Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer , 1999, Nature Genetics.

[45]  S. Lewis,et al.  The mechanism of V(D)J joining: lessons from molecular, immunological, and comparative analyses. , 1994, Advances in immunology.