Evolutionary multi-objective optimization and Pareto-frontal uncertainty quantification of interatomic forcefields for thermal conductivity simulations

Abstract Predictive Molecular Dynamics simulations of thermal transport require forcefields that can simultaneously reproduce several structural, thermodynamic and vibrational properties of materials like lattice constants, phonon density of states, and specific heat. This requires a multi-objective optimization approach for forcefield parameterization. Existing methodologies for forcefield parameterization use ad-hoc and empirical weighting schemes to convert this into a single-objective optimization problem. Here, we provide and describe software to perform multi-objective optimization of Stillinger–Weber forcefields (SWFF) for two-dimensional layered materials using the recently developed 3rd generation non-dominated sorting genetic algorithm (NSGA-III). NSGA-III converges to the set of optimal forcefields lying on the Pareto front in the multi-dimensional objective space. This set of forcefields is used for uncertainty quantification of computed thermal conductivity due to variability in the forcefield parameters. We demonstrate this new optimization scheme by constructing a SWFF for a representative two-dimensional material, 2H-MoSe2 and quantifying the uncertainty in their computed thermal conductivity. Program summary Program Title: MOGA-NSGA3 Program Files doi: http://dx.doi.org/10.17632/pbc6nb7hp9.1 Licensing Provisions: GNU General Public License 3 Programming Language: C++ Nature of problem: Interatomic forcefields used for molecular dynamics simulations of thermal conductivity must be parameterized to accurately capture structural and vibrational properties of the material system being modeled. Therefore, these forcefields must be simultaneously optimized against several (n ≥ 5) material properties. However, such parameterization is difficult using existing forcefield parameterization schemes, which are limited to optimization of a single or few (n 3) objectives. Solution method: We present software to perform evolutionary optimization of forcefields for thermal conductivity simulations using the recently developed 3rd generation non-dominated sorting genetic algorithm (NSGA-III). The algorithm’s unique reference-point-based niching and non-dominated sorting schemes enable efficient exploration of higher-dimensional objective spaces while preserving diversity among forcefield populations. The best set of forcefields on the Pareto front are used for estimating uncertainty in computed thermal conductivity due to forcefield parameterization.

[1]  Kalyanmoy Deb,et al.  An Evolutionary Many-Objective Optimization Algorithm Using Reference-Point-Based Nondominated Sorting Approach, Part I: Solving Problems With Box Constraints , 2014, IEEE Transactions on Evolutionary Computation.

[2]  Kresse,et al.  Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set. , 1996, Physical review. B, Condensed matter.

[3]  F Müller-Plathe,et al.  Reversing the perturbation in nonequilibrium molecular dynamics: an easy way to calculate the shear viscosity of fluids. , 1999, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[4]  W. Goddard,et al.  General Multiobjective Force Field Optimization Framework, with Application to Reactive Force Fields for Silicon Carbide. , 2014, Journal of chemical theory and computation.

[5]  Julian D. Gale,et al.  The General Utility Lattice Program (GULP) , 2003 .

[6]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[7]  Alexander P. Moore,et al.  Understanding the uncertainty of interatomic potentials’ parameters and formalism , 2017 .

[8]  Betsy M Rice,et al.  Parameterizing complex reactive force fields using multiple objective evolutionary strategies (MOES). Part 1: ReaxFF models for cyclotrimethylene trinitramine (RDX) and 1,1-diamino-2,2-dinitroethene (FOX-7). , 2015, Journal of chemical theory and computation.

[9]  K. S. Brown,et al.  Bayesian ensemble approach to error estimation of interatomic potentials. , 2004, Physical review letters.

[10]  J. Hunger,et al.  Optimization and analysis of force field parameters by combination of genetic algorithms and neural networks , 1999 .

[11]  A. N. Gandi,et al.  Thermal conductivity of bulk and monolayer MoS2 , 2016 .

[12]  Corporate The MPI Forum MPI: a message passing interface , 1993, Supercomputing '93.

[13]  Costas Papadimitriou,et al.  Bayesian uncertainty quantification and propagation in molecular dynamics simulations: a high performance computing framework. , 2012, The Journal of chemical physics.

[14]  Junmei Wang,et al.  Automatic parameterization of force field by systematic search and genetic algorithms , 2001, J. Comput. Chem..

[15]  D. Frenkel,et al.  An enhanced version of the heat exchange algorithm with excellent energy conservation properties. , 2015, The Journal of chemical physics.

[16]  Jan Peter Hessling Uncertainty Quantification and Model Calibration , 2017 .

[17]  Weber,et al.  Computer simulation of local order in condensed phases of silicon. , 1985, Physical review. B, Condensed matter.

[18]  Q. K. Timerghazin,et al.  Genetic algorithm optimization of point charges in force field development: challenges and insights. , 2015, The journal of physical chemistry. A.

[19]  Message Passing Interface Forum MPI: A message - passing interface standard , 1994 .

[20]  Blöchl,et al.  Projector augmented-wave method. , 1994, Physical review. B, Condensed matter.

[21]  Joanna Trylska,et al.  Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA , 2011, EvoBio.

[22]  T. Ikeshoji,et al.  Non-equilibrium molecular dynamics calculation of heat conduction in liquid and through liquid-gas interface , 1994 .

[23]  M. Buehler,et al.  Thermal transport in monolayer graphene oxide: Atomistic insights into phonon engineering through surface chemistry , 2014 .