Virally Induced Cellular MicroRNA miR-155 Plays a Key Role in B-Cell Immortalization by Epstein-Barr Virus

ABSTRACT Infection of resting primary human B cells by Epstein-Barr virus (EBV) results in their transformation into indefinitely proliferating lymphoblastoid cell lines (LCLs). LCL formation serves as a model for lymphomagenesis, and LCLs are phenotypically similar to EBV-positive diffuse large B-cell lymphomas (DLBCLs), which represent a common AIDS-associated malignancy. B-cell infection by EBV induces the expression of several cellular microRNAs (miRNAs), most notably miR-155, which is overexpressed in many tumors and can induce B-cell lymphomas when overexpressed in animals. Here, we demonstrate that miR-155 is the most highly expressed miRNA in LCLs and that the selective inhibition of miR-155 function specifically inhibits the growth of both LCLs and the DLBCL cell line IBL-1. Cells lacking miR-155 are inefficient in progressing through S phase and spontaneously undergo apoptosis. In contrast, three other B-cell lymphoma lines, including two EBV-positive Burkitt's lymphoma cell lines, grew normally in the absence of miR-155 function. These data identify the induction of cellular miR-155 expression by EBV as critical for the growth of both laboratory-generated LCLs and naturally occurring DLBCLs and suggest that targeted inhibition of miR-155 function could represent a novel approach to the treatment of DLBCL in vivo.

[1]  G. Meister,et al.  Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas , 2009, Journal of Virology.

[2]  N. Rajewsky,et al.  Discovering microRNAs from deep sequencing data using miRDeep , 2008, Nature Biotechnology.

[3]  Anton J. Enright,et al.  Identification of Virus-Encoded MicroRNAs , 2004, Science.

[4]  E. Flemington,et al.  MicroRNA miR-155 Inhibits Bone Morphogenetic Protein (BMP) Signaling and BMP-Mediated Epstein-Barr Virus Reactivation , 2010, Journal of Virology.

[5]  H. Allgayer,et al.  MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer , 2008, Oncogene.

[6]  E. Hui,et al.  Analysis of Epstein-Barr virus latent gene expression in endemic Burkitt's lymphoma and nasopharyngeal carcinoma tumour cells by using quantitative real-time PCR assays. , 2006, The Journal of general virology.

[7]  B. Cullen,et al.  A Human Herpesvirus MicroRNA Inhibits p21 Expression and Attenuates p21-Mediated Cell Cycle Arrest , 2010, Journal of Virology.

[8]  R. Aguiar,et al.  Coordinated expression of microRNA-155 and predicted target genes in diffuse large B-cell lymphoma. , 2008, Cancer genetics and cytogenetics.

[9]  U. Nater,et al.  Epstein-Barr virus. , 1991, The Journal of family practice.

[10]  Wayne Tam,et al.  Reticuloendotheliosis Virus Strain T Induces miR-155, Which Targets JARID2 and Promotes Cell Survival , 2009, Journal of Virology.

[11]  J. Mrázek,et al.  Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells , 2007, Nucleic acids research.

[12]  M. Lacey,et al.  MicroRNA-155 Is an Epstein-Barr Virus-Induced Gene That Modulates Epstein-Barr Virus-Regulated Gene Expression Pathways , 2008, Journal of Virology.

[13]  J. Burnside,et al.  Sequence Conservation and Differential Expression of Marek's Disease Virus MicroRNAs , 2008, Journal of Virology.

[14]  A. van den Berg,et al.  BIC and miR‐155 are highly expressed in Hodgkin, primary mediastinal and diffuse large B cell lymphomas , 2005, The Journal of pathology.

[15]  Alberto Riva,et al.  Kaposi's Sarcoma-Associated Herpesvirus Encodes an Ortholog of miR-155 , 2007, Journal of Virology.

[16]  E. Kieff Epstein-Barr virus and its replication , 1996 .

[17]  M. Malim,et al.  Immunodeficiency virus rev trans-activator modulates the expression of the viral regulatory genes , 1988, Nature.

[18]  Stefano Volinia,et al.  Pre-B cell proliferation and lymphoblastic leukemia/high-grade lymphoma in E(mu)-miR155 transgenic mice. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[19]  N. Colburn,et al.  MicroRNA-21 promotes cell transformation by targeting the programmed cell death 4 gene , 2008, Oncogene.

[20]  W. S. Hayward,et al.  Multiple proto-oncogene activations in avian leukosis virus-induced lymphomas: evidence for stage-specific events , 1989, Molecular and cellular biology.

[21]  Scott B. Dewell,et al.  Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP , 2010, Cell.

[22]  B. Cullen,et al.  MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs , 2008, Nature.

[23]  Anton J. Enright,et al.  Requirement of bic/microRNA-155 for Normal Immune Function , 2007, Science.

[24]  C. Croce,et al.  Epstein-Barr Virus-Induced miR-155 Attenuates NF-κB Signaling and Stabilizes Latent Virus Persistence , 2008, Journal of Virology.

[25]  Wayne Tam,et al.  Accumulation of miR-155 and BIC RNA in human B cell lymphomas. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Michel C Nussenzweig,et al.  MicroRNA-155 suppresses activation-induced cytidine deaminase-mediated Myc-Igh translocation. , 2008, Immunity.

[27]  E. Morii,et al.  Latent membrane protein-1 of Epstein-Barr virus induces the expression of B-cell integration cluster, a precursor form of microRNA-155, in B lymphoma cell lines. , 2008, Biochemical and biophysical research communications.

[28]  A. Rossi,et al.  Epstein–Barr virus latent membrane protein 1 trans-activates miR-155 transcription through the NF-κB pathway , 2008, Nucleic acids research.

[29]  D. Trono,et al.  A Third-Generation Lentivirus Vector with a Conditional Packaging System , 1998, Journal of Virology.

[30]  Bryan R. Cullen,et al.  In-Depth Analysis of Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Expression Provides Insights into the Mammalian MicroRNA-Processing Machinery , 2009, Journal of Virology.

[31]  S. Kauppinen,et al.  Therapeutic Silencing of MicroRNA-122 in Primates with Chronic Hepatitis C Virus Infection , 2010, Science.

[32]  N. Rajewsky,et al.  Regulation of the Germinal Center Response by MicroRNA-155 , 2007, Science.

[33]  E. Cesarman,et al.  Early events of B-cell receptor signaling are not essential for the proliferation and viability of AIDS-related lymphoma , 2009, Leukemia.

[34]  Shamit Soneji,et al.  Microrna expression distinguishes between germinal center B cell‐like and activated B cell‐like subtypes of diffuse large B cell lymphoma , 2007, International journal of cancer.

[35]  Thomas D. Schmittgen,et al.  Increased expression of microRNA‐155 in Epstein‐Barr virus transformed lymphoblastoid cell lines , 2006, Genes, chromosomes & cancer.

[36]  Bryan R. Cullen,et al.  A viral microRNA functions as an orthologue of cellular miR-155 , 2007, Nature.

[37]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[38]  Margaret S. Ebert,et al.  MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells , 2007, Nature Methods.

[39]  E. Cesarman,et al.  HIV-associated lymphomas and gamma-herpesviruses. , 2009, Blood.

[40]  Ryan M. O’Connell,et al.  Inositol phosphatase SHIP1 is a primary target of miR-155 , 2009, Proceedings of the National Academy of Sciences.

[41]  Thomas Tuschl,et al.  MicroRNA-155 is a negative regulator of activation-induced cytidine deaminase. , 2008, Immunity.

[42]  Alexandra Schäfer,et al.  Epstein–Barr Virus MicroRNAs Are Evolutionarily Conserved and Differentially Expressed , 2006, PLoS pathogens.

[43]  E. Flemington,et al.  Epstein-Barr virus growth/latency III program alters cellular microRNA expression. , 2008, Virology.

[44]  Anton J. Enright,et al.  microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells. , 2007, Immunity.

[45]  Xiaowei Wang,et al.  A Functional MicroRNA-155 Ortholog Encoded by the Oncogenic Marek's Disease Virus , 2008, Journal of Virology.

[46]  Adam Grundhoff,et al.  A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses. , 2006, RNA.

[47]  C. Hother,et al.  Onco-miR-155 targets SHIP1 to promote TNFα-dependent growth of B cell lymphomas , 2009, EMBO molecular medicine.

[48]  B. Cullen,et al.  The role of RNAi and microRNAs in animal virus replication and antiviral immunity. , 2009, Genes & development.

[49]  Alice Shapiro,et al.  MicroRNA-21 targets a network of key tumor-suppressive pathways in glioblastoma cells. , 2008, Cancer research.

[50]  B. Cullen,et al.  A Novel Assay for Viral MicroRNA Function Identifies a Single Nucleotide Polymorphism That Affects Drosha Processing , 2006, Journal of Virology.

[51]  A. van den Berg,et al.  miRNA analysis in B‐cell chronic lymphocytic leukaemia: proliferation centres characterized by low miR‐150 and high BIC/miR‐155 expression , 2008, The Journal of pathology.

[52]  Eric J Wagner,et al.  Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells. , 2002, Molecular cell.

[53]  R. Weinberg,et al.  Assaying microRNA loss-of-function phenotypes in mammalian cells: Emerging tools and their potential therapeutic utility , 2009, RNA biology.

[54]  E. Haralambieva,et al.  Lack of BIC and microRNA miR‐155 expression in primary cases of Burkitt lymphoma , 2006, Genes, chromosomes & cancer.

[55]  R. Aguiar,et al.  Targeting of SMAD5 links microRNA-155 to the TGF-β pathway and lymphomagenesis , 2010, Proceedings of the National Academy of Sciences.