Review of probabilistic pollen-climate transfer methods

Abstract Pollen-climate transfer methods are reviewed from a Bayesian perspective and with a special focus on the formulation of uncertainties. This approach is motivated by recent developments of spatial multi-proxy Bayesian hierarchical models (BHM), which allow synthesizing local reconstructions from different proxies for a spatially complete picture of past climate. In order to enhance the pollen realism in these models we try to bridge the gap between spatial statistics and paleoclimatology and show how far classical pollen-climate transfer concepts such as regression methods, mutual climatic range, modern analogues, plant functional types, and biomes can be understood in novel ways by refining the data models used in BHMs. As a case study, we discuss modeling of uncertainty by introducing a new probabilistic pollen ratio model, which is a simplified variation of the modern analogue technique (MAT) including the concept of response surfaces and designed for later inclusion in a spatial multiproxy BHM. Applications to fossil pollen data from varved sediments in three nearby lakes in west-central Wisconsin, USA and for a Holocene fossil pollen record from southern California, USA provide local climate reconstructions of summer temperature for the past millennium and the Holocene respectively. The performance of the probabilistic model is generally similar in comparison to MAT-derived reconstructions using the same data. Furthermore, the combination of co-location and precise dating for the three fossil sites in Wisconsin allows us to study the issue of site-specific uncertainty and to test the assumption of ergodicity in a real-world example. A multivariate ensemble kernel dressing approach derived from the post-processing of climate simulations reveals that the overall interpretation based on the individual reconstructions remains essentially unchanged, but the single-site reconstructions underestimate the overall uncertainty.

[1]  T. Webb,,et al.  Calibrating pollen data in climatic terms: Improving the methods , 1983 .

[2]  Lasse Holmström,et al.  Selection of prior distributions and multiscale analysis in Bayesian temperature reconstructions based on fossil assemblages , 2006 .

[3]  Edward R. Cook,et al.  Asian Monsoon Failure and Megadrought During the Last Millennium , 2010, Science.

[4]  D. Gavin,et al.  A statistical approach to evaluating distance metrics and analog assignments for pollen records , 2003, Quaternary Research.

[5]  B Huntley,et al.  Reconstructing biomes from palaeoecological data: a general method and its application to European pollen data at 0 and 6 ka , 1996 .

[6]  M. Latałowa,et al.  Late Quaternary expansion of Norway spruce Picea abies (L.) Karst. in Europe according to pollen data , 2006 .

[7]  Jerry Nedelman,et al.  Book review: “Bayesian Data Analysis,” Second Edition by A. Gelman, J.B. Carlin, H.S. Stern, and D.B. Rubin Chapman & Hall/CRC, 2004 , 2005, Comput. Stat..

[8]  Eugene R. Wahl,et al.  Robustness of the Mann, Bradley, Hughes reconstruction of Northern Hemisphere surface temperatures: Examination of criticisms based on the nature and processing of proxy climate evidence , 2007 .

[9]  H. Birks,et al.  Strengths and Weaknesses of Quantitative Climate Reconstructions Basedon Late-Quaternary , 2010 .

[10]  C. Schölzel,et al.  Vegetation and climate history in the Westeifel Volcanic Field (Germany) during the past 11 000 years based on annually laminated lacustrine maar sediments , 2009 .

[11]  John W. Williams Variations in tree cover in North America since the last glacial maximum , 2003 .

[12]  V. Mosbrugger,et al.  Eemian to early Würmian climate dynamics: history and pattern of changes in Central Europe , 2004 .

[13]  Patrick J. Bartlein,et al.  Paleoclimatic interpretation of the Elk Lake pollen record , 1993 .

[14]  E. Cook,et al.  Long-Term Aridity Changes in the Western United States , 2004, Science.

[15]  Thomas M. Hamill,et al.  Comparison of Ensemble-MOS Methods Using GFS Reforecasts , 2007 .

[16]  Patrick J. Bartlein,et al.  Climatic response surfaces from pollen data for some eastern North American taxa , 1986 .

[17]  M. Hughes,et al.  Global-scale temperature patterns and climate forcing over the past six centuries , 1998 .

[18]  Andreas Hense,et al.  Transfer Functions for Paleoclimate Reconstructions — Theory and Methods , 2004 .

[19]  David B. Dunson,et al.  Bayesian Data Analysis , 2010 .

[20]  I. C. Prentice,et al.  BIOME3: An equilibrium terrestrial biosphere model based on ecophysiological constraints, resource availability, and competition among plant functional types , 1996 .

[21]  W. Cramer,et al.  A global biome model based on plant physiology and dominance, soil properties and climate , 1992 .

[22]  M. Hughes,et al.  Northern hemisphere temperatures during the past millennium: Inferences, uncertainties, and limitations , 1999 .

[23]  G. Faluvegi,et al.  Global Signatures and Dynamical Origins of the Little Ice Age and Medieval Climate Anomaly , 2009, Science.

[24]  Leonard A. Smith,et al.  From ensemble forecasts to predictive distribution functions , 2008 .

[25]  K. Gajewski,et al.  Modern pollen data from North America and Greenland for multi-scale paleoenvironmental applications , 2005 .

[26]  Eduardo Zorita,et al.  Assessment of three temperature reconstruction methods in the virtual reality of a climate simulation , 2009 .

[27]  H. Wanner,et al.  European Seasonal and Annual Temperature Variability, Trends, and Extremes Since 1500 , 2004, Science.

[28]  V. Mosbrugger,et al.  Reconstructing palaeotemperatures for the Early and Middle Pleistocene using the mutual climatic range method based on plant fossils , 2000 .

[29]  J. Bernabo,et al.  Quantitative Estimates of Temperature Changes Over the Last 2700 Years in Michigan Based on Pollen Data , 1981, Quaternary Research.

[30]  Stephen T. Jackson,et al.  MODERN ANALOGS IN QUATERNARY PALEOECOLOGY: Here Today, Gone Yesterday, Gone Tomorrow? , 2004 .

[31]  R. S. Thompson,et al.  Pollen-based continental climate reconstructions at 6 and 21 ka: a global synthesis , 2011 .

[32]  W. Peltier,et al.  Comparison of North-American pollen-based temperature and global lake-status with CCCma AGCM2 output at 6 ka , 2004 .

[33]  M. Hughes,et al.  Proxy-based reconstructions of hemispheric and global surface temperature variations over the past two millennia , 2008, Proceedings of the National Academy of Sciences.

[34]  Peter John Huybers,et al.  A Bayesian Algorithm for Reconstructing Climate Anomalies in Space and Time. Part I: Development and Applications to Paleoclimate Reconstruction Problems , 2010 .

[35]  John W. Williams,et al.  Obtaining accurate and precise environmental reconstructions from the modern analog technique and North American surface pollen dataset , 2008 .

[36]  H. Birks,et al.  D.G. Frey and E.S. Deevey Review 1: Numerical tools in palaeolimnology – Progress, potentialities, and problems , 1998 .

[37]  V. Garreta Bayesian approach of pollen-based palaeoclimate reconstructions: Toward the modelling of ecological processes , 2010 .

[38]  Hannu Toivonen,et al.  Holocene temperature changes in northern Fennoscandia reconstructed from chironomids using Bayesian modelling , 2002 .

[39]  S. Sugita,et al.  Theory of quantitative reconstruction of vegetation II: all you need is LOVE , 2007 .

[40]  Patrick J. Bartlein,et al.  Holocene Climatic Change in the Northern Midwest: Pollen-Derived Estimates , 1984, Quaternary Research.

[41]  Eugene R. Wahl,et al.  A general framework for determining cutoff values to select pollen analogs with dissimilarity metrics in the modern analog technique , 2004 .

[42]  Simon P. Wilson,et al.  Bayesian palaeoclimate reconstruction , 2006 .

[43]  Michael C. Sawada,et al.  An open source implementation of the Modern Analog Technique (MAT) within the R computing environment , 2006, Comput. Geosci..

[44]  Andreas Hense,et al.  Probability Density Functions as Botanical-Climatological Transfer Functions for Climate Reconstruction , 2002, Quaternary Research.

[45]  Emmanuel S. Gritti,et al.  An extended probabilistic approach of plant vital attributes: an application to European pollen records at 0 and 6 ka , 2004 .

[46]  O. Davis Climate and vegetation patterns in surface samples from arid Western U.S.A.; application to Holocene climatic reconstructions , 1995 .

[47]  Jarrod D. Hadfield,et al.  MCMC methods for multi-response generalized linear mixed models , 2010 .

[48]  J. Guiot,et al.  A few prospective ideas on climate reconstruction: from a statistical single proxy approach towards a multi-proxy and dynamical approach , 2009 .

[49]  E. Wahl Paleoecology and testing of paleoclimate hypotheses in southern California during the Holocene , 2002 .

[50]  C. Gebhardt,et al.  Reconstruction of Quaternary temperature fields by dynamically consistent smoothing , 2008 .

[51]  D. Nychka,et al.  The Value of Multiproxy Reconstruction of Past Climate , 2010 .

[52]  Steve Juggins,et al.  Weighted averaging partial least squares regression (WA-PLS): an improved method for reconstructing environmental variables from species assemblages , 1993, Hydrobiologia.

[53]  Murali Haran,et al.  Piecing together the past: statistical insights into paleoclimatic reconstructions , 2010 .

[54]  Odile Peyron,et al.  Climatic Reconstruction in Europe for 18,000 YR B.P. from Pollen Data , 1998, Quaternary Research.

[55]  J. Iversen Viscum, Hedera and Ilex as Climate Indicators , 1944 .

[56]  H. Birks Strengths and Weaknesses of Quantitative Climate Reconstructions Based on Late-Quaternary Biological Proxies , 2011 .

[57]  David B. Stephenson An Introduction to Probability Forecasting , 2008 .

[58]  A. Hense,et al.  Digitization and geo‐referencing of botanical distribution maps , 2002 .

[59]  A. Hense,et al.  Probabilistic assessment of regional climate change in Southwest Germany by ensemble dressing , 2011 .

[60]  Benjamin Smith,et al.  Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within European climate space , 2008 .

[61]  A. Hense,et al.  Eemian and Early Weichselian temperature and precipitation variability in northern Germany , 2007 .

[62]  Malcolm K. Hughes,et al.  Proxy-Based Northern Hemisphere Surface Temperature Reconstructions: Sensitivity to Method, Predictor Network, Target Season, and Target Domain , 2005 .

[63]  K. Gajewski,et al.  Vegetation and fire history from three lakes with varved sediments in northwestern Wisconsin (U.S.A.) , 1985 .

[64]  Heikki Mannila,et al.  APPLYING BAYESIAN STATISTICS TO ORGANISM-BASED ENVIRONMENTAL RECONSTRUCTION , 2001 .

[65]  J. Overpeck,et al.  Quantitative Interpretation of Fossil Pollen Spectra: Dissimilarity Coefficients and the Method of Modern Analogs , 1985, Quaternary Research.

[66]  Ulf Dieckmann,et al.  The Geometry of Ecological Interactions: Simplifying Spatial Complexity , 2000 .

[67]  J. Guiot,et al.  A method to determine warm and cool steppe biomes from pollen data; application to the Mediterranean and Kazakhstan regions , 1998 .

[68]  Christian Ohlwein,et al.  A pollen-based reconstruction of summer temperature in central North America and implications for circulation patterns during medieval times , 2012 .

[69]  Jarrod Had MCMC Methods for Multi-Response Generalized Linear Mixed Models: The MCMCglmm R Package , 2010 .

[70]  K. Gajewski Late Holocene Climate Changes in Eastern North America Estimated from Pollen Data , 1988, Quaternary Research.

[71]  A. Hense,et al.  Holocene vegetation and climate history of the northern Golan heights (Near East) , 2007 .

[72]  E. Wahl,et al.  Palaeoenvironmental reconstructions using the modern analogue technique: the effects of sample size and decision rules , 2005 .

[73]  Sandy P. Harrison,et al.  Climate change and Arctic ecosystems: 2. Modeling, paleodata‐model comparisons, and future projections , 2003 .

[74]  Simon Brewer,et al.  A probabilistic approach to the use of pollen indicators for plant attributes and biomes: an application to European vegetation at 0 and 6 ka , 2003 .

[75]  Sylvia Richardson,et al.  Markov Chain Monte Carlo in Practice , 1997 .

[76]  Jean-Jacques Boreux,et al.  Inverse vegetation modeling by Monte Carlo sampling to reconstruct palaeoclimates under changed precipitation seasonality and CO2 conditions: application to glacial climate in Mediterranean region , 2000 .

[77]  Hannu Toivonen,et al.  A Bayesian multinomial Gaussian response model for organism-based environmental reconstruction , 2000 .

[78]  P. Friederichs,et al.  Multivariate non-normally distributed random variables in climate research - introduction to the copula approach , 2008 .

[79]  Douglas W. Nychka,et al.  The ‘hockey stick’ and the 1990s: a statistical perspective on reconstructing hemispheric temperatures , 2007 .

[80]  J. Smerdon,et al.  Comparative performance of paleoclimate field and index reconstructions derived from climate proxies and noise‐only predictors , 2012 .

[81]  Edward R. Cook,et al.  SPATIAL REGRESSION METHODS IN DENDROCLIMATOLOGY: A REVIEW AND COMPARISON OF TWO TECHNIQUES , 1994 .

[82]  Simon Brewer,et al.  A method for climate and vegetation reconstruction through the inversion of a dynamic vegetation model , 2010 .

[83]  Adrian E. Raftery,et al.  Model-Based Clustering, Discriminant Analysis, and Density Estimation , 2002 .

[84]  J. Smerdon,et al.  A Pseudoproxy Evaluation of the CCA and RegEM Methods for Reconstructing Climate Fields of the Last Millennium , 2010 .

[85]  Edward R. Cook,et al.  North American drought: Reconstructions, causes, and consequences , 2007 .