Agarase: Review of Major Sources, Categories, Purification Method, Enzyme Characteristics and Applications

Agarases are the enzymes which catalyze the hydrolysis of agar. They are classified into α-agarase (E.C. 3.2.1.158) and β-agarase (E.C. 3.2.1.81) according to the cleavage pattern. Several agarases have been isolated from different genera of bacteria found in seawater and marine sediments, as well as engineered microorganisms. Agarases have wide applications in food industry, cosmetics, and medical fields because they produce oligosaccharides with remarkable activities. They are also used as a tool enzyme for biological, physiological, and cytological studies. The paper reviews the category, source, purification method, major characteristics, and application fields of these native and gene cloned agarases in the past, present, and future.

[1]  C. Pan,et al.  Preparation of algal‐oligosaccharide mixtures by bacterial agarases and their antioxidative properties , 2004 .

[2]  J. Lalitha,et al.  Purification and characterization of β-agarase from agar-liquefying soil bacterium, Acinetobacter sp., AG LSL-1 , 2009 .

[3]  Y. Souche,et al.  Extracellular β-agarase LSL-1 producing neoagarobiose from a newly isolated agar-liquefying soil bacterium, Acinetobacter sp., AG LSL-1 , 2006 .

[4]  S. Ito,et al.  Purification and Characterization of a Novel α-Agarase from a Thalassomonas sp. , 2005, Current Microbiology.

[5]  D. Groleau,et al.  Enzymatic hydrolysis of agar: purification and characterization of beta-neoagarotetraose hydrolase from Pseudomonas atlantica. , 1977, Canadian journal of microbiology.

[6]  Glyn O. Phillips,et al.  Handbook of hydrocolloids. , 2009 .

[7]  Lu,et al.  Purification and characterization of agarases from a marine bacterium, Vibrio sp. PO-303. , 1998, Journal of marine biotechnology.

[8]  K. Kirimura,et al.  Neoagarobiose as a novel moisturizer with whitening effect. , 1997, Bioscience, biotechnology, and biochemistry.

[9]  Tohru Suzuki,et al.  Purification and characterization of an extracellular alpha-neoagarooligosaccharide hydrolase from Bacillus sp. MK03. , 2002, Journal of bioscience and bioengineering.

[10]  Y. Sugano,et al.  Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107 , 1993, Applied and environmental microbiology.

[11]  Y. Sugano,et al.  Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107. , 1994, Biochimica et biophysica acta.

[12]  E. Murano,et al.  Identification of a Marine AgarolyticPseudoalteromonas Isolate and Characterization of Its Extracellular Agarase , 1998, Applied and Environmental Microbiology.

[13]  Hong Lin,et al.  Purification and characterization of a novel β-agarase, AgaA34, from Agarivorans albus YKW-34 , 2008, Applied Microbiology and Biotechnology.

[14]  Huashi Guan,et al.  Characterization of a novel β-agarase from marine Alteromonas sp. SY37–12 and its degrading products , 2005, Applied Microbiology and Biotechnology.

[15]  K. Kirimura,et al.  Purification and characterization of a novel beta-agarase from an alkalophilic bacterium, Alteromonas sp. E-1. , 1999, Journal of bioscience and bioengineering.

[16]  C. Pan,et al.  Gene cloning, expression, and characterization of a beta-agarase, agaB34,from Agarivorans albus YKW-34. , 2009, Journal of microbiology and biotechnology.

[17]  M. Malmqvist Purification and characterization of two different agarose-degrading enzymes. , 1978, Biochimica et biophysica acta.

[18]  B. Henrissat,et al.  The Three-dimensional Structures of Two β-Agarases* , 2003, Journal of Biological Chemistry.

[19]  P. Bernfeld,et al.  [17] Amylases, α and β , 1955 .

[20]  Norton Nelson,et al.  A PHOTOMETRIC ADAPTATION OF THE SOMOGYI METHOD FOR THE DETERMINATION OF GLUCOSE , 1944 .

[21]  Lu,et al.  Optimization of parameters for isolation of protoplasts from Gracilaria verrucosa (Rhodophyta). , 1998, Journal of marine biotechnology.

[22]  B. Kloareg,et al.  The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours. , 2005, The Biochemical journal.

[23]  Jinhua Dong,et al.  A unique β-agarase, AgaA, from a marine bacterium, Vibrio sp. strain PO-303 , 2007, Applied Microbiology and Biotechnology.

[24]  Oscar Leon,et al.  Purification and Properties of an Extracellular Agarase from Alteromonas sp. Strain C-1 , 1992, Applied and environmental microbiology.

[25]  Chao Shi,et al.  Molecular Cloning and Characterization of a Novel β-Agarase, AgaB, from Marine Pseudoalteromonas sp. CY24* , 2006, Journal of Biological Chemistry.

[26]  B. Henrissat,et al.  Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose. , 2004, Structure.

[27]  J. Cha,et al.  Cloning, expression and characterization of a β-agarase gene from a marine bacterium, Pseudomonas sp. SK38 , 2003, Biotechnology Letters.

[28]  W. Long,et al.  beta-agarases I and II from Pseudomonas atlantica. Purifications and some properties. , 1983, European journal of biochemistry.

[29]  jae-hwa Lee,et al.  Cloning, expression, and characterization of a glycoside hydrolase family 50 β-agarase from a marine Agarivorans isolate , 2006, Biotechnology Letters.

[30]  K. Horikoshi,et al.  Hyperproduction and application of alpha-agarase to enzymatic enhancement of antioxidant activity of porphyran. , 2006, Journal of agricultural and food chemistry.

[31]  Jinhua Dong,et al.  Cloning of the Novel Gene Encoding β-Agarase C from a Marine Bacterium, Vibrio sp. Strain PO-303, and Characterization of the Gene Product , 2006, Applied and Environmental Microbiology.

[32]  P. S. Carlson The use of protoplasts for genetic research. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[33]  P. Gold Use of a novel agarose gel-digesting enzyme for easy and rapid purification of PCR-amplified DNA for sequencing. , 1992, BioTechniques.

[34]  B. Kloareg,et al.  Purification and characterization of the alpha-agarase from Alteromonas agarlyticus (Cataldi) comb. nov., strain GJ1B. , 1993, European journal of biochemistry.

[35]  T. Araki,et al.  Purification and characterization of a novel β-agarase from Vibrio sp. AP-2 , 1990 .

[36]  J. R. Turvey,et al.  An extracellular agarase from a Cytophaga species. , 1968, The Biochemical journal.

[37]  T. Wen,et al.  Algal-oligosaccharide-lysates prepared by two bacterial agarases stepwise hydrolyzed and their anti-oxidative properties , 2005, Fisheries Science.

[38]  W. Yaphe,et al.  Analysis of the enzymic hydrolysis products of agarose by13C-n.m.r. spectroscopy , 1977 .

[39]  Ziniu Yu,et al.  A Novel β-Agarase with High pH Stability from Marine Agarivorans sp. LQ48 , 2010, Marine Biotechnology.

[40]  D. Bolam,et al.  Family 6 Carbohydrate Binding Modules in β-Agarases Display Exquisite Selectivity for the Non-reducing Termini of Agarose Chains* , 2006, Journal of Biological Chemistry.

[41]  B. Henrissat,et al.  Genomic and Proteomic Analyses of the Agarolytic System Expressed by Saccharophagus degradans 2-40 , 2006, Applied and Environmental Microbiology.

[42]  Wei-Wei Zhang,et al.  Cloning, Characterization, and Molecular Application of a Beta-Agarase Gene from Vibrio sp. Strain V134 , 2007, Applied and Environmental Microbiology.

[43]  Cuiping Ma,et al.  A simple method of preparing diverse neoagaro-oligosaccharides with β-agarase , 2007 .

[44]  W. Yaphe The use of agarase from Pseudomonas atlantica in the identification of agar in marine algae (Rhodophyceae). , 1957, Canadian journal of microbiology.

[45]  S. Ito,et al.  Enzymatic properties and nucleotide and amino acid sequences of a thermostable β-agarase from a novel species of deep-sea Microbulbifer , 2004, Applied Microbiology and Biotechnology.

[46]  Y. Sugano,et al.  Purification and characterization of a new agarase from a marine bacterium, Vibrio sp. strain JT0107 , 1993, Applied and environmental microbiology.

[47]  Y. Xu,et al.  Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105 , 2009, Journal of applied microbiology.

[48]  S. Ito,et al.  Cloning, expression, and characterization of a glycoside hydrolase family 86 β-agarase from a deep-sea Microbulbifer-like isolate , 2004, Applied Microbiology and Biotechnology.

[49]  S. Ito,et al.  Enzymatic Properties and Nucleotide and Amino Acid Sequences of a Thermostable β-Agarase from the Novel Marine Isolate, JAMB-A94 , 2004, Bioscience, biotechnology, and biochemistry.

[50]  R. Armisén,et al.  Production, properties and uses of agar , 1987 .

[51]  A. Trincone,et al.  Marine glycosyl hydrolases in the hydrolysis and synthesis of oligosaccharides , 2006, Biotechnology journal.

[52]  Tohru Suzuki,et al.  Purification and characterization of an extracellular beta-agarase from Bacillus sp. MK03. , 2003, Journal of bioscience and bioengineering.

[53]  Huashi Guan,et al.  Anti-oxidation of agar oligosaccharides produced by agarase from a marine bacterium , 2004, Journal of Applied Phycology.

[54]  Jinhua Dong,et al.  Molecular Cloning, Expression, and Characterization of a β-Agarase Gene, agaD, from a Marine Bacterium, Vibrio sp. Strain PO-303 , 2007, Bioscience, biotechnology, and biochemistry.