Coarse-to-Fine Hamiltonian Dynamics of Hierarchical Flows in Computational Anatomy

We present here the Hamiltonian control equations for hierarchical diffeomorphic flows of particles. We define the controls to be a series of multi-scale vector fields, each with their own reproducing kernel Hilbert space norm. The hierarchical control is connected across scale through successive refinements that refine as they ascend the hierarchy with commensurately higher bandwidth Green’s kernels. Interestingly the geodesic equations do not separate, with fine scale motions determined by all of the particle information simultaneously, from coarse to fine. Additionally, the hierarchical conservation law is derived, defining the geodesics and demonstrating the constancy of the Hamiltonian. We show results on one simulated example and one example from histological images of an Alzheimer’s disease brain. We introduce the varifold action to transport the weights of micro-scale particles for mapping to sub millimeter scale cortical folds.

[1]  S. Mallat A wavelet tour of signal processing , 1998 .

[2]  Daniel Rueckert,et al.  Simultaneous Multi-scale Registration Using Large Deformation Diffeomorphic Metric Mapping , 2011, IEEE Transactions on Medical Imaging.

[3]  Stéphane Mallat,et al.  Group Invariant Scattering , 2011, ArXiv.

[4]  Stéphane Mallat,et al.  A Wavelet Tour of Signal Processing, 2nd Edition , 1999 .

[5]  R. Haddad,et al.  Multiresolution Signal Decomposition: Transforms, Subbands, and Wavelets , 1992 .

[6]  Michael I. Miller,et al.  Diffeomorphic Registration With Intensity Transformation and Missing Data: Application to 3D Digital Pathology of Alzheimer's Disease , 2018, bioRxiv.

[7]  Michael I Miller,et al.  On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model , 2018, bioRxiv.

[8]  Ingrid Daubechies,et al.  Ten Lectures on Wavelets , 1992 .

[9]  Alain Trouvé,et al.  Hamiltonian Systems and Optimal Control in Computational Anatomy: 100 Years Since D'Arcy Thompson. , 2015, Annual review of biomedical engineering.

[10]  François-Xavier Vialard,et al.  Metric Learning for Image Registration , 2019, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[11]  Edward H. Adelson,et al.  The Laplacian Pyramid as a Compact Image Code , 1983, IEEE Trans. Commun..

[12]  M. Albert,et al.  The BIOCARD Index: A Summary Measure to Predict Onset of Mild Cognitive Impairment , 2017, Alzheimer disease and associated disorders.

[13]  Michael I. Miller,et al.  3D Mapping of Serial Histology Sections with Anomalies Using a Novel Robust Deformable Registration Algorithm , 2019, MBIA/MFCA@MICCAI.

[14]  Alain Trouvé,et al.  A Sub-Riemannian Modular Framework for Diffeomorphism-Based Analysis of Shape Ensembles , 2018, SIAM J. Imaging Sci..

[15]  Xavier Pennec,et al.  A Multi-scale Kernel Bundle for LDDMM: Towards Sparse Deformation Description across Space and Scales , 2011, IPMI.