Dissimilarity measures for population-based global optimization algorithms

Very hard optimization problems, i.e., problems with a large number of variables and local minima, have been effectively attacked with algorithms which mix local searches with heuristic procedures in order to widely explore the search space. A Population Based Approach based on a Monotonic Basin Hopping optimization algorithm has turned out to be very effective for this kind of problems. In the resulting algorithm, called Population Basin Hopping, a key role is played by a dissimilarity measure. The basic idea is to maintain a sufficient dissimilarity gap among the individuals in the population in order to explore a wide part of the solution space.The aim of this paper is to study and computationally compare different dissimilarity measures to be used in the field of Molecular Cluster Optimization, exploring different possibilities fitting with the problem characteristics. Several dissimilarities, mainly based on pairwise distances between cluster elements, are introduced and tested. Each dissimilarity measure is defined as a distance between cluster descriptors, which are suitable representations of cluster information which can be extracted during the optimization process.It will be shown that, although there is no single dissimilarity measure which dominates the others, from one side it is extremely beneficial to introduce dissimilarities and from another side it is possible to identify a group of dissimilarity criteria which guarantees the best performance.

[1]  R. A. Silverman,et al.  Introductory Real Analysis , 1972 .

[2]  Jorge Nocedal,et al.  On the limited memory BFGS method for large scale optimization , 1989, Math. Program..

[3]  J. Doye,et al.  Global Optimization by Basin-Hopping and the Lowest Energy Structures of Lennard-Jones Clusters Containing up to 110 Atoms , 1997, cond-mat/9803344.

[4]  Remco C. Veltkamp,et al.  Shape matching: similarity measures and algorithms , 2001, Proceedings International Conference on Shape Modeling and Applications.

[5]  Bernardetta Addis,et al.  Efficiently packing unequal disks in a circle , 2008, Oper. Res. Lett..

[6]  A. Murat Tekalp,et al.  Shape similarity matching for query-by-example , 1998, Pattern Recognit..

[7]  Peter Norvig,et al.  Artificial Intelligence: A Modern Approach , 1995 .

[8]  Bernard Chazelle,et al.  Shape distributions , 2002, TOGS.

[9]  Roger Sauter,et al.  Introduction to Probability and Statistics for Engineers and Scientists , 2005, Technometrics.

[10]  Andrea Grosso,et al.  An experimental analysis of a population based approach for global optimization , 2007, Comput. Optim. Appl..

[11]  J. IIVARINENHelsinki Efficiency of Simple Shape Descriptors , 1997 .

[12]  Remco C. Veltkamp,et al.  State of the Art in Shape Matching , 2001, Principles of Visual Information Retrieval.

[13]  Andrea Grosso,et al.  A Population-based Approach for Hard Global Optimization Problems based on Dissimilarity Measures , 2007, Math. Program..

[14]  Marco Locatelli,et al.  On the Multilevel Structure of Global Optimization Problems , 2005, Comput. Optim. Appl..

[15]  David P. Dobkin,et al.  The quickhull algorithm for convex hulls , 1996, TOMS.

[16]  Julian Lee,et al.  Unbiased global optimization of Lennard-Jones clusters for N < or =201 using the conformational space annealing method. , 2003, Physical review letters.

[17]  Bernd Hartke,et al.  Global cluster geometry optimization by a phenotype algorithm with Niches: Location of elusive minima, and low-order scaling with cluster size , 1999, J. Comput. Chem..

[18]  Michael Ian Shamos,et al.  Computational geometry: an introduction , 1985 .

[19]  Jitendra Malik,et al.  Shape matching and object recognition using shape contexts , 2010, 2010 3rd International Conference on Computer Science and Information Technology.

[20]  Fabio Schoen,et al.  Global Optimization of Morse Clusters by Potential Energy Transformations , 2004, INFORMS J. Comput..

[21]  Bernardetta Addis,et al.  New results for molecular formation under pairwise potential minimization , 2007, Comput. Optim. Appl..

[22]  Robert H. Leary,et al.  Global Optimization on Funneling Landscapes , 2000, J. Glob. Optim..