DNA barcoding for identification of fish species from freshwater in Enugu and Anambra States of Nigeria

[1]  K. Zhu,et al.  DNA Barcoding Is a Useful Tool for the Identification of the Family Scaridae in Hainan , 2022, Journal of Marine Science and Engineering.

[2]  S. McKenzie,et al.  DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists , 2018, PloS one.

[3]  A. Adeola,et al.  DNA barcoding of economically important freshwater fish species from north‐central Nigeria uncovers cryptic diversity , 2018, Ecology and evolution.

[4]  W. Jianjun,et al.  DNA barcoding for identification of fish species in the Taiwan Strait , 2018, PloS one.

[5]  Sudhir Kumar,et al.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. , 2018, Molecular biology and evolution.

[6]  E. Zaniboni-Filho,et al.  Genetic Variation of the Endangered Neotropical Catfish Steindachneridion scriptum (Siluriformes: Pimelodidae) , 2018, Front. Genet..

[7]  Jiaen Zhang,et al.  Preservation of the genetic diversity of a local common carp in the agricultural heritage rice–fish system , 2018, Proceedings of the National Academy of Sciences.

[8]  E. Abbas,et al.  Phylogeny and DNA Barcoding of the Family Sparidae Inferred from Mitochondrial DNA of the Egyptian Waters , 2017 .

[9]  Jeremy A. Miller,et al.  Comment on Falade et al . (2016) DNA-barcoding of Clarias gariepinus , Coptedon zillii and Sarotherodon melanotheron from Southwestern Nigeria , 2016 .

[10]  W. S. Lakra,et al.  DNA barcoding Indian freshwater fishes , 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

[11]  N. B. Petrov,et al.  Molecular genetic markers of intra- and interspecific divergence within starfish and sea urchins (Echinodermata) , 2016, Biochemistry (Moscow).

[12]  G. V. Villanova,et al.  First DNA Barcode Reference Library for the Identification of South American Freshwater Fish from the Lower Paraná River , 2016, PloS one.

[13]  M. Falade,et al.  DNA barcoding of Clarias gariepinus, Coptodon zillii and Sarotherodon melanotheron from Southwestern Nigeria , 2016, F1000Research.

[14]  J. Olden,et al.  Phylogenetic species delimitation for crayfishes of the genus Pacifastacus , 2016, PeerJ.

[15]  Dengqiang Wang,et al.  DNA barcoding and evaluation of genetic diversity in Cyprinidae fish in the midstream of the Yangtze River , 2016, Ecology and evolution.

[16]  Doreen Ware,et al.  The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences , 2016, PLoS biology.

[17]  G. Sabella,et al.  A COI Nonsynonymous Mutation as Diagnostic Tool for Intraspecific Discrimination in the European Anchovy Engraulis encrasicolus (Linnaeus) , 2015, PloS one.

[18]  D. Faith Phylogenetic diversity, functional trait diversity and extinction: avoiding tipping points and worst-case losses , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[19]  J. Zuanon,et al.  DNA Barcoding in Pencilfishes (Lebiasinidae: Nannostomus) Reveals Cryptic Diversity across the Brazilian Amazon , 2015, PloS one.

[20]  V. Moretti,et al.  Cytochrome Oxidase-I Sequence Based Studies of Commercially Available Pangasius Hypophthalmus in Italy , 2015 .

[21]  M. T. Bottero,et al.  Application of DNA Barcoding for Controlling of the Species from Octopus Genus , 2014, Italian journal of food safety.

[22]  G. Carvalho,et al.  A reliable DNA barcode reference library for the identification of the North European shelf fish fauna , 2014, Molecular ecology resources.

[23]  P. Sahoo,et al.  Mitochondrial Dna Variation and Population Genetic Structure of Snow Trout from Kumaun and Garhwal Himalayan Regions of India , 2014 .

[24]  R. Deb,et al.  Molecular markers and their applications in cattle genetic research: A review , 2014 .

[25]  E. Garcia-Vazquez,et al.  Applications of DNA barcoding to fish landings: authentication and diversity assessment , 2013, ZooKeys.

[26]  P. Stadler,et al.  Genetic aspects of mitochondrial genome evolution. , 2013, Molecular phylogenetics and evolution.

[27]  J. Ovenden,et al.  Contrasting Genetic Structure among Populations of Two Amphidromous Fish Species (Sicydiinae) in the Central West Pacific , 2013, PloS one.

[28]  E. Keskin,et al.  DNA barcoding commercially important fish species of Turkey , 2013, Molecular ecology resources.

[29]  R. Hanner,et al.  Can DNA barcoding accurately discriminate megadiverse Neotropical freshwater fish fauna? , 2013, BMC Genetics.

[30]  B. Kang,et al.  Phylogenetic Analysis of a Privately-owned Korean Native Chicken Population Using mtDNA D-loop Variations , 2013, Asian-Australasian journal of animal sciences.

[31]  Wenpan Dong,et al.  Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding , 2012, PloS one.

[32]  R. Hanner,et al.  Molecular Approach to the Identification of Fish in the South China Sea , 2012, PloS one.

[33]  R. Hanner,et al.  DNA Barcoding Identifies Argentine Fishes from Marine and Brackish Waters , 2011, PloS one.

[34]  R. Hanner,et al.  DNA barcoding discriminates freshwater fishes from southeastern Nigeria and provides river system-level phylogeographic resolution within some species , 2011, Mitochondrial DNA.

[35]  R. Hanner,et al.  Deep barcode divergence in Brazilian freshwater fishes: the case of the São Francisco River basin , 2011, Mitochondrial DNA.

[36]  D. Bobori,et al.  DNA barcoding analysis of fish species diversity in four north Greek lakes , 2011, Mitochondrial DNA.

[37]  R. Hanner,et al.  DNA barcodes discriminate freshwater fishes from the Paraíba do Sul River Basin, São Paulo, Brazil , 2011, Mitochondrial DNA.

[38]  L. Bernatchez,et al.  Genetic calibration of species diversity among North America's freshwater fishes , 2011, Proceedings of the National Academy of Sciences.

[39]  N. Sanders,et al.  Elevational gradients in phylogenetic structure of ant communities reveal the interplay of biotic and abiotic constraints on diversity , 2011 .

[40]  D. Steinke,et al.  Biodiversity of arctic marine fishes: taxonomy and zoogeography , 2011, Marine Biodiversity.

[41]  R. Hanner,et al.  DNA barcoding is a useful tool for the identification of marine fishes from Japan , 2011 .

[42]  P. Hebert,et al.  DNA barcoding Indian marine fishes , 2011, Molecular ecology resources.

[43]  D. Campo,et al.  Identifying Fishes through DNA Barcodes and Microarrays , 2010, PloS one.

[44]  A. Schüßler,et al.  DNA barcoding of arbuscular mycorrhizal fungi. , 2010, The New phytologist.

[45]  Linzi Wilson-Wilde,et al.  Current issues in species identification for forensic science and the validity of using the cytochrome oxidase I (COI) gene , 2010, Forensic science, medicine, and pathology.

[46]  D. Marcogliese,et al.  DNA barcodes show cryptic diversity and a potential physiological basis for host specificity among Diplostomoidea (Platyhelminthes: Digenea) parasitizing freshwater fishes in the St. Lawrence River, Canada , 2010, Molecular ecology.

[47]  Josino Costa Moreira,et al.  DNA barcoding for conservation and management of Amazonian commercial fish. , 2010 .

[48]  Andrew P. Martin,et al.  Barcoding bushmeat: molecular identification of Central African and South American harvested vertebrates , 2010, Conservation Genetics.

[49]  L. Bernatchez,et al.  DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts , 2010, Molecular ecology resources.

[50]  T. García,et al.  Novel TaqMan real-time polymerase chain reaction assay for verifying the authenticity of meat and commercial meat products from game birds , 2010, Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment.

[51]  Todd H. Oakley,et al.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. , 2010, Ecology letters.

[52]  M. Smith,et al.  Invasions, DNA barcodes, and rapid biodiversity assessment using ants of Mauritius , 2009, Frontiers in Zoology.

[53]  S. Radu,et al.  Meat species identification and Halal authentication analysis using mitochondrial DNA. , 2009, Meat science.

[54]  G. Khedkar,et al.  COI (cytochrome oxidase-I) sequence based studies of Carangid fishes from Kakinada coast, India , 2009, Molecular Biology Reports.

[55]  R. Hanner,et al.  Identification of the larval and juvenile stages of the Cubera Snapper, Lutjanus cyanopterus, using DNA barcoding , 2009, Zootaxa.

[56]  R. S. Rasmussen,et al.  DNA barcoding of commercially important salmon and trout species (Oncorhynchus and Salmo) from North America. , 2009, Journal of agricultural and food chemistry.

[57]  D. Steinke,et al.  Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade , 2009, PloS one.

[58]  Pablo Librado,et al.  DnaSP v5: a software for comprehensive analysis of DNA polymorphism data , 2009, Bioinform..

[59]  C. H. Wang,et al.  A comparison of complete mitochondrial genomes of silver carp Hypophthalmichthys molitrix and bighead carp Hypophthalmichthys nobilis: implications for their taxonomic relationship and phylogeny. , 2009, Journal of fish biology.

[60]  P. Hebert,et al.  Species identification of North American guinea worms (Nematoda: Dracunculus) with DNA barcoding , 2009, Molecular ecology resources.

[61]  P. Hebert,et al.  DNA barcode accumulation curves for understudied taxa and areas , 2009, Molecular ecology resources.

[62]  R. Hanner,et al.  Public health response to puffer fish (Tetrodotoxin) poisoning from mislabeled product. , 2009, Journal of food protection.

[63]  Chih-Han Chang,et al.  Identifying earthworms through DNA barcodes: Pitfalls and promise , 2009 .

[64]  Nicolas Galtier,et al.  The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals , 2009, BMC Evolutionary Biology.

[65]  R. Hanner,et al.  The campaign to DNA barcode all fishes, FISH-BOL. , 2009, Journal of fish biology.

[66]  P. Hebert,et al.  Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. , 2009, Journal of fish biology.

[67]  F. Teletchea Molecular identification methods of fish species: reassessment and possible applications , 2009, Reviews in Fish Biology and Fisheries.

[68]  Roland Benz,et al.  Clostridium perfringens Delta Toxin Is Sequence Related to Beta Toxin, NetB, and Staphylococcus Pore-Forming Toxins, but Shows Functional Differences , 2008, PloS one.

[69]  Bruce D. Patterson,et al.  The Status of the World's Land and Marine Mammals: Diversity, Threat, and Knowledge , 2008, Science.

[70]  R. Hanner,et al.  DNA barcoding detects market substitution in North American seafood , 2008 .

[71]  Kate E. Jones,et al.  Phylogenetic trees and the future of mammalian biodiversity , 2008, Proceedings of the National Academy of Sciences.

[72]  N. Mandrak,et al.  Identifying Canadian Freshwater Fishes through DNA Barcodes , 2008, PloS one.

[73]  G. Carvalho,et al.  DNA barcodes of fish of the Scotia Sea, Antarctica indicate priority groups for taxonomic and systematics focus , 2008, Antarctic Science.

[74]  A. Bortolus,et al.  Error Cascades in the Biological Sciences: The Unwanted Consequences of Using Bad Taxonomy in Ecology , 2008, Ambio.

[75]  T. Waite,et al.  Will hotspots conserve extra primate and carnivore evolutionary history? , 2007 .

[76]  R. Hanner,et al.  Species identification in cell culture: a two-pronged molecular approach , 2007, In Vitro Cellular & Developmental Biology - Animal.

[77]  P. Ikonomi,et al.  Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena. , 2007, International journal of systematic and evolutionary microbiology.

[78]  Oliver Berry,et al.  Faecal DNA detection of invasive species: the case of feral foxes in Tasmania , 2007 .

[79]  P. Hebert,et al.  DNA barcoding of Neotropical bats: species identification and discovery within Guyana , 2007 .

[80]  Richard Grenyer,et al.  Preserving the evolutionary potential of floras in biodiversity hotspots , 2007, Nature.

[81]  S. Ratnasingham,et al.  Biological identifications through DNA barcodes: the case of the Crustacea , 2007 .

[82]  M. E. Mort,et al.  Inferring phylogeny at low taxonomic levels: utility of rapidly evolving cpDNA and nuclear ITS loci. , 2007, American journal of botany.

[83]  A. Cywinska,et al.  Identifying Canadian mosquito species through DNA barcodes , 2006, Medical and veterinary entomology.

[84]  Susan M. Huse,et al.  Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.

[85]  D. Faith,et al.  Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges , 2006, Evolutionary bioinformatics online.

[86]  C. Meyer,et al.  DNA Barcoding: Error Rates Based on Comprehensive Sampling , 2005, PLoS biology.

[87]  D. Rand,et al.  The Population Biology of Mitochondrial DNA and Its Phylogenetic Implications , 2005 .

[88]  R. Ward,et al.  DNA barcoding Australia's fish species , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[89]  Paul D. N. Hebert,et al.  Identifying spiders through DNA barcodes , 2005 .

[90]  Michael C Whitlock,et al.  The incomplete natural history of mitochondria , 2004, Molecular ecology.

[91]  H. Huo,et al.  Larval identification of Lutjanus Bloch in Nansha coral reefs by AFLP molecular method , 2004 .

[92]  Rodrigo Lopez,et al.  Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..

[93]  Jeremy R. deWaard,et al.  Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[94]  Andy Purvis,et al.  Hotspots and the conservation of evolutionary history , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[95]  M. Nei,et al.  Molecular Evolution and Phylogenetics , 2000 .

[96]  B. Collette,et al.  Importance of assessing taxonomic adequacy in determining fishing effects on marine biodiversity , 2000 .

[97]  B. G. Baldwin,et al.  Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). , 1998, Molecular phylogenetics and evolution.

[98]  Y. Fu,et al.  Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. , 1997, Genetics.

[99]  T. Lim,et al.  RAPD analysis: an efficient method of DNA fingerprinting in fishes. , 1993, Zoological science.

[100]  F. Tajima Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.

[101]  M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[102]  J. S. Nelson,et al.  Fishes of the world. , 1978 .

[103]  D. Boonkusol,et al.  Genetic Variation of Striped Snakehead Fish (Channa striata) in River Basin of Central Thailand Inferred from mtDNA COI Gene Sequences Analysis , 2016 .

[104]  R. Hanner,et al.  Use of DNA barcode in the identification of fish species from Ribeira de Iguape Basin and coastal rivers from São Paulo State (Brazil) , 2015 .

[105]  G. Ude,et al.  The Use of DNA Barcoding in Identification of Genetic Diversity of Fish in Ugwu-Omu Nike River in Enugu. , 2015 .

[106]  W. S. Lakra,et al.  DNA barcoding detected improper labelling and supersession of crab food served by restaurants in India. , 2015, Journal of the science of food and agriculture.

[107]  R. Ward FISH-BOL, a case study for DNA barcodes. , 2012, Methods in molecular biology.

[108]  L. Cocolin,et al.  Molecular methods for the differentiation of species used in production of cod-fish can detect commercial frauds , 2005 .

[109]  J. Felsenstein Evolutionary trees from DNA sequences: A maximum likelihood approach , 2005, Journal of Molecular Evolution.

[110]  E. Douzery,et al.  High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. , 2000, The Journal of general virology.

[111]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[112]  D. Faith Conservation evaluation and phylogenetic diversity , 1992 .