Molecular fingerprinting and assessment of genetic diversity in rose ( Rosa × hybrida )

Rose (Rosa × hybrida) is economically important floricultural crop and represents a major product for commercial floriculture market as well as oil industry. Understanding its genetic diversity is important for crop improvement programmes, while DNA fingerprinting for accurate identification of clones, cultivars and varieties. In the present investigation, genetic variability among 32 rose cultivars were analysed by using 20 RAPD and 10 ISSR markers, where a total of 306 bands were detected with a range of 6 to 18 bands per marker. ISSR markers were found to be more useful since the average polymorphic information content (PIC), resolving power of primer (RP) and marker index (MI) was better compared to that of RAPD markers. UPGMA-cluster-analysis based on genetic distance coefficients ranged 0.44 to 0.91, clearly distinguished all the genotypes, including Suryodaya and Suryakiran, which are morphologically almost identical. Thus the molecular fingerprinting data of rose cultivars generated in the present study would be helpful for the varietal identification and conservation. Moreover, results of diversity analysis suggested that the cultivated rose varieties display a high level of genetic variability despite the fact that the morphological and physiological characters were found to be less polymorphic.

[1]  T. Sharma,et al.  Assessment of clonal fidelity of micropropagated gerbera plants by ISSR markers , 2009 .

[2]  D. Byrne,et al.  Two genetic linkage maps of tetraploid roses , 2001, Theoretical and Applied Genetics.

[3]  A. Depicker,et al.  AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.) , 2000, Molecular Breeding.

[4]  W. Powell,et al.  Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato , 1997, Molecular Breeding.

[5]  H. Fukui,et al.  Identification of rose cultivars and clonal plants by random amplified polymorphic DNA , 1996 .

[6]  M. Moreno,et al.  USE OF MOLECULAR MARKERS IN TAXONOMIC STUDIES OF ROSA SP. , 1996 .

[7]  C. Teyssier,et al.  CHARACTERISATION OF A COLLECTION OF BOTANICAL ROSE TREES BY PHENOTYPIC DATA ANALYSIS , 1996 .

[8]  Michele Morgante,et al.  The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis , 1996, Molecular Breeding.

[9]  H. D. Patel Micropropagation of Rose (Rosa hybrida L.) var. red masterpiece , 1995 .

[10]  D. Labuda,et al.  Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. , 1994, Genomics.

[11]  K. Livak,et al.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. , 1990, Nucleic acids research.

[12]  W. F. Thompson,et al.  Rapid isolation of high molecular weight plant DNA. , 1980, Nucleic acids research.

[13]  H. Sonah,et al.  Genetic diversity analysis of marigold (Tagetes sp) genotypes using RAPD and ISSR markers , 2013 .

[14]  M. Khalifa,et al.  Molecular identification and genetic relationships of six strawberry varieties using ISSR markers. , 2008 .

[15]  Sudhir Kumar,et al.  Molecular characterization of fragrant rose cultivars , 2006 .

[16]  J. Cubero,et al.  Genetic Diversity in Rosa as Revealed by RAPDs , 2005 .

[17]  E. Žurawicz,et al.  Fruit plant germplasm characterisation using molecular markers generated in RAPD and ISSR-PCR. , 2002, Cellular & molecular biology letters.

[18]  M. Wilkinson,et al.  A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars , 1999, Theoretical and Applied Genetics.

[19]  J. Welsh,et al.  Fingerprinting genomes using PCR with arbitrary primers. , 1990, Nucleic acids research.

[20]  G. Nielsen The use of isozymes as probes to identify and label plant varieties and cultivars. , 1985, Isozymes.

[21]  L. Kuhns,et al.  A study of the potential use of electrophoresis in distinguishing rose cultivars , 1977 .